Wall clock time and date at job start Tue Mar 31 2020 07:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46860 * 2 1 4 4 H 1.08997 * 109.48072 * 305.02082 * 3 2 1 5 5 C 1.53091 * 109.47492 * 184.99775 * 3 2 1 6 6 C 1.53184 * 109.16092 * 182.39799 * 5 3 2 7 7 H 1.08997 * 109.54562 * 176.94190 * 6 5 3 8 8 N 1.46505 * 109.54186 * 297.11453 * 6 5 3 9 9 C 1.39782 * 119.99808 * 204.82349 * 8 6 5 10 10 C 1.38950 * 120.00223 * 180.02562 * 9 8 6 11 11 C 1.38012 * 119.99258 * 179.97438 * 10 9 8 12 12 C 1.38902 * 120.00333 * 0.02562 * 11 10 9 13 13 O 1.35805 * 119.99209 * 180.02562 * 12 11 10 14 14 C 1.34808 * 116.99718 * 5.54225 * 13 12 11 15 15 H 1.07996 * 120.00371 * 354.93917 * 14 13 12 16 16 C 1.38629 * 119.99795 * 174.94243 * 14 13 12 17 17 N 1.31584 * 119.99826 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00045 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47407 * 270.00384 * 18 16 14 20 20 H 1.48501 * 109.46822 * 30.00172 * 18 16 14 21 21 H 1.48498 * 109.46868 * 150.00054 * 18 16 14 22 22 C 1.38898 * 120.01554 * 0.26954 * 12 11 10 23 23 C 1.38015 * 120.00172 * 359.45756 * 22 12 11 24 24 C 1.53176 * 109.10697 * 57.02440 * 6 5 3 25 25 C 1.53274 * 109.06618 * 303.05819 * 24 6 5 26 26 O 1.42904 * 109.48858 * 65.05322 * 3 2 1 27 27 H 1.09003 * 109.47167 * 60.00222 * 1 2 3 28 28 H 1.08997 * 109.47157 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46893 * 300.00273 * 1 2 3 30 30 H 1.09000 * 109.47165 * 240.00204 * 2 1 3 31 31 H 1.08994 * 109.46935 * 119.99872 * 2 1 3 32 32 H 1.08999 * 109.52192 * 62.49717 * 5 3 2 33 33 H 1.08995 * 109.58058 * 302.33621 * 5 3 2 34 34 H 0.96996 * 119.99920 * 24.81915 * 8 6 5 35 35 H 1.08000 * 120.00648 * 0.02562 * 10 9 8 36 36 H 1.07997 * 119.99955 * 180.02562 * 11 10 9 37 37 H 0.96998 * 119.99837 * 180.02562 * 17 16 14 38 38 H 1.07995 * 119.99744 * 179.70488 * 22 12 11 39 39 H 1.07994 * 120.00212 * 180.29378 * 23 22 12 40 40 H 1.08994 * 109.51914 * 62.88555 * 24 6 5 41 41 H 1.09003 * 109.52020 * 183.07153 * 24 6 5 42 42 H 1.08997 * 109.46132 * 297.56173 * 25 24 6 43 43 H 1.09005 * 109.46947 * 177.55720 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6051 1.9819 -0.8415 5 6 3.5657 1.4446 -0.1257 6 6 4.0733 2.8886 -0.0647 7 1 5.1627 2.8939 -0.0991 8 7 3.5435 3.6428 -1.2035 9 6 4.2243 4.7697 -1.6730 10 6 3.7216 5.4855 -2.7527 11 6 4.3937 6.5984 -3.2158 12 6 5.5728 7.0026 -2.6029 13 8 6.2337 8.0981 -3.0585 14 6 5.6347 8.8135 -4.0315 15 1 4.7125 8.4622 -4.4702 16 6 6.2026 10.0000 -4.4689 17 7 7.3265 10.4277 -3.9347 18 14 5.3731 10.9910 -5.8177 19 1 5.8816 10.5489 -7.1410 20 1 3.9046 10.7790 -5.7558 21 1 5.6735 12.4330 -5.6285 22 6 6.0788 6.2838 -1.5275 23 6 5.4041 5.1741 -1.0605 24 6 3.5986 3.5322 1.2417 25 6 2.0699 3.4482 1.3146 26 8 1.6632 2.0815 1.2215 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8534 0.9973 -1.0772 33 1 4.0004 0.8708 0.6927 34 1 2.7203 3.3602 -1.6316 35 1 2.8045 5.1714 -3.2289 36 1 4.0028 7.1550 -4.0547 37 1 7.7237 11.2581 -4.2406 38 1 6.9981 6.5956 -1.0543 39 1 5.7950 4.6179 -0.2213 40 1 4.0331 3.0008 2.0883 41 1 3.9098 4.5765 1.2673 42 1 1.6355 4.0137 0.4903 43 1 1.7279 3.8655 2.2618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070346058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:53 Heat of formation + Delta-G solvation = -73.830671 kcal Electronic energy + Delta-G solvation = -23049.768953 eV Core-core repulsion = 19673.411454 eV Total energy + Delta-G solvation = -3376.357499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.15236 -40.38686 -38.53209 -36.13042 -34.87014 -34.18119 -32.58531 -31.68416 -30.75733 -28.58203 -27.13403 -25.96497 -24.70539 -23.57840 -22.65494 -22.23407 -20.64148 -19.56441 -18.80420 -17.93712 -17.35787 -16.95586 -16.74912 -16.20322 -15.77146 -15.65428 -15.35849 -15.30265 -14.89177 -14.56607 -14.45436 -14.11998 -14.03039 -13.77020 -13.53119 -13.34300 -13.15675 -12.78926 -12.74154 -12.63384 -12.48397 -12.20057 -12.08192 -12.07983 -11.81114 -11.71296 -11.15814 -11.08235 -10.92523 -10.39553 -10.12026 -9.77172 -8.39484 -7.94411 -6.03075 0.58593 0.93423 1.36477 1.46211 1.53824 2.22450 2.60025 2.86954 2.91313 3.25192 3.66366 3.69808 3.82096 3.94152 4.05739 4.12972 4.18534 4.19561 4.28865 4.45015 4.50975 4.55598 4.61083 4.64807 4.74775 4.84923 4.89886 4.96326 4.97352 5.07810 5.13332 5.13958 5.15113 5.18082 5.28564 5.30578 5.46659 5.49465 5.55411 5.78774 5.98442 6.11476 6.33361 6.60848 6.98602 7.06558 7.93529 8.85095 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033846 B = 0.002906 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.072590 B = 9631.442866 C =10002.970383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.087 3.913 4 H 0.054 0.946 5 C -0.148 4.148 6 C 0.151 3.849 7 H 0.079 0.921 8 N -0.739 5.739 9 C 0.156 3.844 10 C -0.146 4.146 11 C -0.193 4.193 12 C 0.062 3.938 13 O -0.243 6.243 14 C -0.405 4.405 15 H 0.098 0.902 16 C -0.029 4.029 17 N -0.927 5.927 18 Si 1.016 2.984 19 H -0.264 1.264 20 H -0.254 1.254 21 H -0.273 1.273 22 C -0.156 4.156 23 C -0.143 4.143 24 C -0.169 4.169 25 C 0.066 3.934 26 O -0.390 6.390 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.398 0.602 35 H 0.137 0.863 36 H 0.118 0.882 37 H 0.270 0.730 38 H 0.112 0.888 39 H 0.142 0.858 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.645 -20.703 8.240 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C 0.030 3.970 4 H 0.072 0.928 5 C -0.186 4.186 6 C 0.046 3.954 7 H 0.097 0.903 8 N -0.374 5.374 9 C 0.056 3.944 10 C -0.168 4.168 11 C -0.213 4.213 12 C 0.013 3.987 13 O -0.151 6.151 14 C -0.482 4.482 15 H 0.115 0.885 16 C -0.225 4.225 17 N -0.567 5.567 18 Si 0.836 3.164 19 H -0.189 1.189 20 H -0.178 1.178 21 H -0.198 1.198 22 C -0.175 4.175 23 C -0.165 4.165 24 C -0.208 4.208 25 C -0.010 4.010 26 O -0.309 6.309 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.234 0.766 35 H 0.154 0.846 36 H 0.135 0.865 37 H 0.078 0.922 38 H 0.130 0.870 39 H 0.160 0.840 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.295 -20.626 8.584 25.501 hybrid contribution -0.057 1.085 -0.934 1.433 sum -12.353 -19.541 7.649 24.350 Atomic orbital electron populations 1.21711 0.95386 1.01966 1.01659 1.21573 0.96617 0.93519 1.03434 1.22216 0.93520 0.94634 0.86662 0.92820 1.22433 0.96445 0.95291 1.04467 1.20912 0.98705 0.90775 0.85039 0.90264 1.44441 1.28317 1.28641 1.35996 1.17472 0.92856 0.89710 0.94385 1.20476 1.01455 0.96361 0.98544 1.21039 0.97145 1.00098 1.03003 1.19740 0.93452 0.89934 0.95580 1.83936 1.44563 1.34962 1.51629 1.21743 1.08774 1.03923 1.13763 0.88480 1.26527 0.97035 0.97324 1.01604 1.70205 1.19895 1.22773 1.43814 0.84616 0.78556 0.76802 0.76414 1.18938 1.17753 1.19774 1.20240 1.01985 0.98013 0.97302 1.20439 0.95784 0.97718 1.02543 1.22660 0.97346 1.02109 0.98685 1.22500 0.93833 0.82576 1.02107 1.87905 1.78883 1.25028 1.39104 0.92913 0.91772 0.93279 0.89173 0.91076 0.89441 0.88920 0.76597 0.84569 0.86472 0.92159 0.87006 0.84018 0.89596 0.91485 0.93810 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.81 71.98 0.71 -1.20 16 2 C -0.11 -1.39 5.64 30.60 0.17 -1.22 16 3 C 0.09 1.31 2.47 30.63 0.08 1.39 16 4 H 0.05 0.83 6.71 -2.39 -0.02 0.81 16 5 C -0.15 -2.09 5.08 30.69 0.16 -1.94 16 6 C 0.15 2.77 2.50 45.11 0.11 2.88 16 7 H 0.08 1.52 6.48 -2.39 -0.02 1.51 16 8 N -0.74 -16.34 4.57 -318.22 -1.46 -17.80 16 9 C 0.16 4.82 6.64 38.21 0.25 5.07 16 10 C -0.15 -5.04 9.89 22.39 0.22 -4.82 16 11 C -0.19 -8.53 9.16 22.38 0.20 -8.32 16 12 C 0.06 3.17 6.65 22.59 0.15 3.32 16 13 O -0.24 -15.00 9.76 -23.13 -0.23 -15.23 16 14 C -0.41 -24.21 9.48 67.91 0.64 -23.56 16 15 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 16 C -0.03 -1.68 5.49 84.82 0.47 -1.21 16 17 N -0.93 -58.43 13.67 21.61 0.30 -58.14 16 18 Si 1.02 44.01 29.55 68.60 2.03 46.03 16 19 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 C -0.16 -6.72 9.98 22.37 0.22 -6.50 16 23 C -0.14 -4.81 8.88 22.39 0.20 -4.61 16 24 C -0.17 -3.08 5.78 30.74 0.18 -2.91 16 25 C 0.07 1.23 6.68 72.07 0.48 1.71 16 26 O -0.39 -7.39 9.95 -148.98 -1.48 -8.87 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.75 7.82 -2.39 -0.02 0.73 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.40 7.71 7.08 -92.71 -0.66 7.05 16 35 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 36 H 0.12 5.28 5.63 -2.91 -0.02 5.27 16 37 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 38 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 39 H 0.14 3.88 6.21 -2.91 -0.02 3.86 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.43 7.84 -2.39 -0.02 1.41 16 42 H 0.04 0.88 7.75 -2.39 -0.02 0.86 16 43 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -71.63 343.24 3.76 -67.87 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.35 Total: 28.04 kcal Atomic # 6 Polarization: -46.16 SS G_CDS: 4.24 Total: -41.91 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -1.16 Total: -75.94 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -1.71 Total: -24.10 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.63 3.76 -67.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070346058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.956 kcal (2) G-P(sol) polarization free energy of solvation -71.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds