Wall clock time and date at job start Tue Mar 31 2020 07:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46918 * 2 1 4 4 H 1.09001 * 109.48264 * 55.02300 * 3 2 1 5 5 C 1.53089 * 109.48082 * 175.05469 * 3 2 1 6 6 C 1.53182 * 109.16464 * 177.59062 * 5 3 2 7 7 H 1.09001 * 109.54220 * 183.15439 * 6 5 3 8 8 N 1.46501 * 109.61543 * 62.93216 * 6 5 3 9 9 C 1.39669 * 119.99818 * 155.39992 * 8 6 5 10 10 C 1.39003 * 120.04411 * 0.02562 * 9 8 6 11 11 C 1.38143 * 120.06567 * 179.97438 * 10 9 8 12 12 C 1.38174 * 120.14298 * 359.97438 * 11 10 9 13 13 C 1.38914 * 120.07676 * 0.02562 * 12 11 10 14 14 O 1.35748 * 120.03323 * 180.02562 * 13 12 11 15 15 C 1.34829 * 117.00742 * 174.47976 * 14 13 12 16 16 H 1.08002 * 119.99386 * 5.07445 * 15 14 13 17 17 C 1.38645 * 120.00600 * 185.07889 * 15 14 13 18 18 N 1.31555 * 120.00152 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00052 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46927 * 89.99893 * 19 17 15 21 21 H 1.48496 * 109.47451 * 210.00249 * 19 17 15 22 22 H 1.48505 * 109.47278 * 330.00488 * 19 17 15 23 23 C 1.38755 * 120.03570 * 179.72387 * 9 8 6 24 24 C 1.53180 * 109.03417 * 303.02365 * 6 5 3 25 25 C 1.53086 * 109.16520 * 56.97580 * 24 6 5 26 26 O 1.42895 * 109.42140 * 302.39331 * 25 24 6 27 27 H 1.09000 * 109.47191 * 299.99464 * 1 2 3 28 28 H 1.08998 * 109.47099 * 60.00708 * 1 2 3 29 29 H 1.09009 * 109.46577 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46986 * 239.99778 * 2 1 3 31 31 H 1.09004 * 109.46968 * 120.00192 * 2 1 3 32 32 H 1.09000 * 109.52598 * 297.50187 * 5 3 2 33 33 H 1.09003 * 109.52316 * 57.68579 * 5 3 2 34 34 H 0.97003 * 119.99882 * 335.40112 * 8 6 5 35 35 H 1.08004 * 119.96461 * 359.95278 * 10 9 8 36 36 H 1.08004 * 119.92998 * 179.97438 * 11 10 9 37 37 H 1.07998 * 119.96331 * 179.97438 * 12 11 10 38 38 H 0.97007 * 119.99945 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.07146 * 359.97438 * 23 9 8 40 40 H 1.09002 * 109.52225 * 297.06757 * 24 6 5 41 41 H 1.09003 * 109.51728 * 176.88881 * 24 6 5 42 42 H 1.08995 * 109.47996 * 182.40230 * 25 24 6 43 43 H 1.09009 * 109.48490 * 62.38388 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9816 0.8420 5 6 3.5658 1.4446 0.1244 6 6 4.0733 2.8886 0.0631 7 1 5.1629 2.8937 0.0948 8 7 3.5463 3.6439 1.2024 9 6 4.2258 4.7724 1.6665 10 6 5.4019 5.1800 1.0478 11 6 6.0741 6.2964 1.5062 12 6 5.5798 7.0117 2.5801 13 6 4.4049 6.6097 3.2028 14 8 3.9198 7.3134 4.2574 15 6 2.7189 6.9391 4.7429 16 1 2.2261 6.0629 4.3479 17 6 2.1166 7.6788 5.7490 18 7 0.9451 7.3132 6.2229 19 14 2.9692 9.1938 6.4326 20 1 2.5593 10.3877 5.6505 21 1 2.5853 9.3783 7.8552 22 1 4.4408 9.0198 6.3355 23 6 3.7242 5.4918 2.7418 24 6 3.5956 3.5310 -1.2428 25 6 2.0686 3.4483 -1.3144 26 8 1.6619 2.0816 -1.2210 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8544 0.9971 1.0755 33 1 3.9989 0.8712 -0.6952 34 1 2.7253 3.3602 1.6344 35 1 5.7908 4.6230 0.2081 36 1 6.9880 6.6109 1.0241 37 1 6.1079 7.8838 2.9363 38 1 0.5239 7.8306 6.9271 39 1 2.8078 5.1803 3.2210 40 1 4.0293 2.9998 -2.0901 41 1 3.9055 4.5757 -1.2694 42 1 1.7260 3.8657 -2.2612 43 1 1.6348 4.0138 -0.4896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070353119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:01 Heat of formation + Delta-G solvation = -56.375515 kcal Electronic energy + Delta-G solvation = -23414.396104 eV Core-core repulsion = 20038.795517 eV Total energy + Delta-G solvation = -3375.600586 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.13733 -38.98694 -37.07568 -35.07407 -34.11600 -32.37412 -31.80442 -29.99407 -29.10514 -27.84878 -25.25484 -25.07980 -23.79905 -21.82256 -21.57053 -21.18593 -19.34957 -17.85869 -17.49465 -16.58460 -16.25123 -15.86060 -15.19091 -15.03767 -14.82012 -14.30144 -14.04590 -13.87271 -13.69901 -13.60136 -13.37135 -13.11982 -12.61255 -12.44488 -12.19250 -12.06841 -11.93957 -11.79486 -11.70694 -11.31736 -11.09929 -10.97266 -10.85809 -10.75188 -10.60233 -10.32393 -10.18789 -9.62856 -9.41057 -9.33599 -8.80843 -7.47954 -6.86781 -6.38544 -4.05417 2.28549 2.45343 3.24227 3.27912 3.43051 3.63852 3.72402 4.26764 4.45239 4.61418 4.62980 4.78644 4.91608 4.94008 4.96187 5.08151 5.15812 5.17536 5.31051 5.35540 5.50502 5.60533 5.65756 5.71011 5.75733 5.79283 5.82872 5.91002 5.93246 6.02409 6.04044 6.14801 6.16944 6.31244 6.51124 6.56094 6.95263 7.16133 7.21671 7.27486 7.51817 7.81097 7.91085 8.04486 8.16987 8.97602 9.62039 10.69324 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.003980 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.271258 B = 7034.006326 C = 8180.610864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.089 3.911 4 H 0.058 0.942 5 C -0.157 4.157 6 C 0.155 3.845 7 H 0.082 0.918 8 N -0.748 5.748 9 C 0.250 3.750 10 C -0.273 4.273 11 C -0.041 4.041 12 C -0.238 4.238 13 C 0.196 3.804 14 O -0.218 6.218 15 C -0.387 4.387 16 H 0.105 0.895 17 C 0.063 3.937 18 N -0.882 5.882 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.291 4.291 24 C -0.171 4.171 25 C 0.064 3.936 26 O -0.379 6.379 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.394 0.606 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.278 0.722 39 H 0.129 0.871 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.027 -11.669 -13.860 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C 0.031 3.969 4 H 0.076 0.924 5 C -0.195 4.195 6 C 0.049 3.951 7 H 0.100 0.900 8 N -0.380 5.380 9 C 0.149 3.851 10 C -0.296 4.296 11 C -0.060 4.060 12 C -0.259 4.259 13 C 0.143 3.857 14 O -0.123 6.123 15 C -0.462 4.462 16 H 0.122 0.878 17 C -0.140 4.140 18 N -0.521 5.521 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.183 1.183 23 C -0.315 4.315 24 C -0.210 4.210 25 C -0.013 4.013 26 O -0.298 6.298 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.229 0.771 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.088 0.912 39 H 0.147 0.853 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.939 -11.597 -13.851 18.489 hybrid contribution -0.023 0.650 0.737 0.983 sum 3.916 -10.947 -13.114 17.525 Atomic orbital electron populations 1.21726 0.95201 1.01418 1.02486 1.21542 0.96825 0.94305 1.02567 1.22104 0.93246 0.94079 0.87437 0.92419 1.22487 0.96856 0.96634 1.03526 1.20779 0.98763 0.89862 0.85717 0.89998 1.44703 1.28685 1.29395 1.35173 1.17475 0.90546 0.85689 0.91414 1.20153 0.99388 1.03349 1.06689 1.20375 0.97475 0.93629 0.94493 1.20028 0.99165 1.04887 1.01776 1.18798 0.91731 0.89395 0.85745 1.83581 1.35341 1.53062 1.40288 1.20746 0.92693 1.13249 1.19560 0.87767 1.24455 0.95077 0.98636 0.95846 1.69648 1.14669 1.40087 1.27669 0.86192 0.80999 0.81959 0.77823 1.19927 1.20866 1.18332 1.20614 1.05903 1.01467 1.03496 1.22660 0.97340 1.02770 0.98229 1.22494 0.93898 0.82742 1.02141 1.87893 1.78692 1.24944 1.38281 0.92738 0.91946 0.92880 0.91227 0.90674 0.90266 0.89963 0.77142 0.87592 0.87086 0.86973 0.91156 0.85298 0.90882 0.90121 0.89182 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.81 37.16 0.36 -1.02 16 2 C -0.11 -1.04 5.64 -26.73 -0.15 -1.19 16 3 C 0.09 0.94 2.47 -26.69 -0.07 0.88 16 4 H 0.06 0.67 6.72 -51.93 -0.35 0.32 16 5 C -0.16 -1.55 5.07 -26.59 -0.13 -1.69 16 6 C 0.15 1.79 2.50 -67.74 -0.17 1.63 16 7 H 0.08 0.96 6.50 -51.93 -0.34 0.62 16 8 N -0.75 -10.79 4.58 -52.00 -0.24 -11.03 16 9 C 0.25 4.49 6.63 -83.81 -0.56 3.93 16 10 C -0.27 -4.57 8.86 -39.33 -0.35 -4.92 16 11 C -0.04 -0.70 10.03 -39.64 -0.40 -1.10 16 12 C -0.24 -4.83 9.99 -39.35 -0.39 -5.22 16 13 C 0.20 4.61 6.65 -39.14 -0.26 4.35 16 14 O -0.22 -5.84 8.58 0.06 0.00 -5.84 16 15 C -0.39 -11.00 9.94 30.88 0.31 -10.69 16 16 H 0.11 3.03 5.43 -52.49 -0.29 2.74 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -25.64 13.96 55.48 0.77 -24.86 16 19 Si 0.90 21.89 28.62 -169.99 -4.86 17.03 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.29 -6.32 9.01 -39.19 -0.35 -6.67 16 24 C -0.17 -1.88 5.74 -26.59 -0.15 -2.03 16 25 C 0.06 0.74 6.68 37.20 0.25 0.99 16 26 O -0.38 -4.54 9.94 -35.23 -0.35 -4.89 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 29 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.39 5.63 7.09 -40.82 -0.29 5.34 16 35 H 0.11 1.52 6.19 -52.48 -0.32 1.19 16 36 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.11 2.15 8.06 -52.49 -0.42 1.72 16 38 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.13 2.97 5.63 -52.49 -0.30 2.67 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.97 7.80 -51.93 -0.40 0.57 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.71 7.75 -51.92 -0.40 0.31 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -29.72 342.03 -8.14 -37.86 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.46 Total: 7.66 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -2.16 Total: -21.08 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.54 Total: -35.90 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.35 Total: -10.73 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.86 Total: 17.03 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.72 -8.14 -37.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070353119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.511 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds