Wall clock time and date at job start Tue Mar 31 2020 07:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46918 * 2 1 4 4 H 1.09001 * 109.48264 * 55.02300 * 3 2 1 5 5 C 1.53089 * 109.48082 * 175.05469 * 3 2 1 6 6 C 1.53182 * 109.16464 * 177.59062 * 5 3 2 7 7 H 1.09001 * 109.54220 * 183.15439 * 6 5 3 8 8 N 1.46501 * 109.61543 * 62.93216 * 6 5 3 9 9 C 1.39669 * 119.99818 * 155.39992 * 8 6 5 10 10 C 1.39003 * 120.04411 * 0.02562 * 9 8 6 11 11 C 1.38143 * 120.06567 * 179.97438 * 10 9 8 12 12 C 1.38174 * 120.14298 * 359.97438 * 11 10 9 13 13 C 1.38914 * 120.07676 * 0.02562 * 12 11 10 14 14 O 1.35748 * 120.03323 * 180.02562 * 13 12 11 15 15 C 1.34829 * 117.00742 * 174.47976 * 14 13 12 16 16 H 1.08002 * 119.99386 * 5.07445 * 15 14 13 17 17 C 1.38645 * 120.00600 * 185.07889 * 15 14 13 18 18 N 1.31555 * 120.00152 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00052 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46927 * 89.99893 * 19 17 15 21 21 H 1.48496 * 109.47451 * 210.00249 * 19 17 15 22 22 H 1.48505 * 109.47278 * 330.00488 * 19 17 15 23 23 C 1.38755 * 120.03570 * 179.72387 * 9 8 6 24 24 C 1.53180 * 109.03417 * 303.02365 * 6 5 3 25 25 C 1.53086 * 109.16520 * 56.97580 * 24 6 5 26 26 O 1.42895 * 109.42140 * 302.39331 * 25 24 6 27 27 H 1.09000 * 109.47191 * 299.99464 * 1 2 3 28 28 H 1.08998 * 109.47099 * 60.00708 * 1 2 3 29 29 H 1.09009 * 109.46577 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46986 * 239.99778 * 2 1 3 31 31 H 1.09004 * 109.46968 * 120.00192 * 2 1 3 32 32 H 1.09000 * 109.52598 * 297.50187 * 5 3 2 33 33 H 1.09003 * 109.52316 * 57.68579 * 5 3 2 34 34 H 0.97003 * 119.99882 * 335.40112 * 8 6 5 35 35 H 1.08004 * 119.96461 * 359.95278 * 10 9 8 36 36 H 1.08004 * 119.92998 * 179.97438 * 11 10 9 37 37 H 1.07998 * 119.96331 * 179.97438 * 12 11 10 38 38 H 0.97007 * 119.99945 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.07146 * 359.97438 * 23 9 8 40 40 H 1.09002 * 109.52225 * 297.06757 * 24 6 5 41 41 H 1.09003 * 109.51728 * 176.88881 * 24 6 5 42 42 H 1.08995 * 109.47996 * 182.40230 * 25 24 6 43 43 H 1.09009 * 109.48490 * 62.38388 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9816 0.8420 5 6 3.5658 1.4446 0.1244 6 6 4.0733 2.8886 0.0631 7 1 5.1629 2.8937 0.0948 8 7 3.5463 3.6439 1.2024 9 6 4.2258 4.7724 1.6665 10 6 5.4019 5.1800 1.0478 11 6 6.0741 6.2964 1.5062 12 6 5.5798 7.0117 2.5801 13 6 4.4049 6.6097 3.2028 14 8 3.9198 7.3134 4.2574 15 6 2.7189 6.9391 4.7429 16 1 2.2261 6.0629 4.3479 17 6 2.1166 7.6788 5.7490 18 7 0.9451 7.3132 6.2229 19 14 2.9692 9.1938 6.4326 20 1 2.5593 10.3877 5.6505 21 1 2.5853 9.3783 7.8552 22 1 4.4408 9.0198 6.3355 23 6 3.7242 5.4918 2.7418 24 6 3.5956 3.5310 -1.2428 25 6 2.0686 3.4483 -1.3144 26 8 1.6619 2.0816 -1.2210 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8544 0.9971 1.0755 33 1 3.9989 0.8712 -0.6952 34 1 2.7253 3.3602 1.6344 35 1 5.7908 4.6230 0.2081 36 1 6.9880 6.6109 1.0241 37 1 6.1079 7.8838 2.9363 38 1 0.5239 7.8306 6.9271 39 1 2.8078 5.1803 3.2210 40 1 4.0293 2.9998 -2.0901 41 1 3.9055 4.5757 -1.2694 42 1 1.7260 3.8657 -2.2612 43 1 1.6348 4.0138 -0.4896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070353119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:01 Heat of formation + Delta-G solvation = -74.060342 kcal Electronic energy + Delta-G solvation = -23415.162975 eV Core-core repulsion = 20038.795517 eV Total energy + Delta-G solvation = -3376.367458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.24942 -40.52106 -38.61722 -36.33517 -34.92281 -34.42325 -33.04587 -30.85403 -30.69045 -29.27271 -27.15305 -26.09106 -24.69988 -23.30883 -22.83414 -22.25139 -20.57240 -19.76266 -19.04390 -17.57150 -17.36765 -17.06950 -16.74129 -16.34844 -15.94875 -15.78266 -15.60951 -15.39835 -14.94354 -14.65471 -14.60584 -14.22404 -14.12208 -13.95773 -13.66767 -13.27646 -13.22148 -12.79834 -12.68221 -12.60947 -12.50933 -12.13914 -12.12425 -11.95209 -11.86063 -11.78224 -11.39460 -11.20252 -11.02332 -10.71274 -10.33212 -9.18553 -8.49440 -8.27179 -6.21945 0.73388 0.87890 1.30952 1.35812 1.52231 2.28540 2.47551 2.81301 2.82023 3.14444 3.25402 3.63379 3.75389 3.89321 4.01969 4.12805 4.19864 4.25075 4.37816 4.40402 4.46789 4.55084 4.59169 4.64952 4.73839 4.78324 4.86539 4.92728 4.99259 5.01769 5.07128 5.08148 5.09461 5.16166 5.25770 5.41413 5.44182 5.46300 5.75479 5.83977 5.90135 6.16659 6.27079 6.58513 6.75582 6.85753 7.62949 8.62375 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.003980 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.271258 B = 7034.006326 C = 8180.610864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C 0.084 3.916 4 H 0.039 0.961 5 C -0.149 4.149 6 C 0.149 3.851 7 H 0.094 0.906 8 N -0.741 5.741 9 C 0.256 3.744 10 C -0.255 4.255 11 C -0.026 4.026 12 C -0.251 4.251 13 C 0.159 3.841 14 O -0.246 6.246 15 C -0.396 4.396 16 H 0.077 0.923 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.971 3.029 20 H -0.266 1.266 21 H -0.267 1.267 22 H -0.263 1.263 23 C -0.314 4.314 24 C -0.164 4.164 25 C 0.062 3.938 26 O -0.387 6.387 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.391 0.609 35 H 0.145 0.855 36 H 0.158 0.842 37 H 0.120 0.880 38 H 0.284 0.716 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.658 -12.595 -16.250 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C 0.026 3.974 4 H 0.057 0.943 5 C -0.187 4.187 6 C 0.044 3.956 7 H 0.112 0.888 8 N -0.371 5.371 9 C 0.152 3.848 10 C -0.278 4.278 11 C -0.045 4.045 12 C -0.272 4.272 13 C 0.109 3.891 14 O -0.153 6.153 15 C -0.473 4.473 16 H 0.095 0.905 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.793 3.207 20 H -0.191 1.191 21 H -0.192 1.192 22 H -0.187 1.187 23 C -0.338 4.338 24 C -0.203 4.203 25 C -0.015 4.015 26 O -0.306 6.306 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.226 0.774 35 H 0.162 0.838 36 H 0.175 0.825 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.092 0.908 42 H 0.121 0.879 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.579 -12.573 -16.292 21.606 hybrid contribution -0.772 0.707 1.192 1.587 sum 5.807 -11.866 -15.100 20.063 Atomic orbital electron populations 1.21722 0.95645 1.02065 1.01425 1.21559 0.96444 0.93294 1.03634 1.22213 0.94011 0.94722 0.86422 0.94256 1.22448 0.95979 0.95595 1.04649 1.21076 0.99335 0.90508 0.84650 0.88801 1.44897 1.28200 1.28366 1.35603 1.17566 0.91061 0.86047 0.90140 1.20628 0.97817 1.02790 1.06521 1.20894 0.98388 0.92500 0.92681 1.20318 0.98228 1.05913 1.02759 1.19399 0.93347 0.90225 0.86112 1.83520 1.34740 1.54522 1.42534 1.20678 0.93742 1.12805 1.20050 0.90503 1.25275 0.95785 1.01661 0.96144 1.69734 1.16179 1.41816 1.28916 0.85216 0.79400 0.78232 0.77853 1.19091 1.19155 1.18726 1.20569 1.05440 1.02421 1.05342 1.22608 0.96603 1.02546 0.98511 1.22516 0.94575 0.82521 1.01867 1.87892 1.79068 1.24933 1.38744 0.93708 0.93104 0.91392 0.90270 0.89372 0.89813 0.87846 0.77418 0.83772 0.82477 0.86172 0.90662 0.88263 0.88545 0.90826 0.87934 0.95142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.81 71.98 0.71 -1.95 16 2 C -0.11 -1.81 5.64 30.59 0.17 -1.64 16 3 C 0.08 1.67 2.47 30.62 0.08 1.74 16 4 H 0.04 0.92 6.72 -2.39 -0.02 0.90 16 5 C -0.15 -2.51 5.07 30.68 0.16 -2.35 16 6 C 0.15 2.99 2.50 45.11 0.11 3.11 16 7 H 0.09 1.73 6.50 -2.39 -0.02 1.72 16 8 N -0.74 -20.68 4.58 -318.44 -1.46 -22.14 16 9 C 0.26 8.94 6.63 38.20 0.25 9.20 16 10 C -0.26 -7.58 8.86 22.43 0.20 -7.38 16 11 C -0.03 -0.80 10.03 22.23 0.22 -0.58 16 12 C -0.25 -9.93 9.99 22.42 0.22 -9.71 16 13 C 0.16 7.71 6.65 22.56 0.15 7.86 16 14 O -0.25 -13.81 8.58 -22.71 -0.19 -14.00 16 15 C -0.40 -24.02 9.94 67.92 0.68 -23.35 16 16 H 0.08 4.91 5.43 -2.91 -0.02 4.89 16 17 C 0.01 0.55 5.49 84.83 0.47 1.01 16 18 N -0.93 -56.29 13.96 21.61 0.30 -55.99 16 19 Si 0.97 46.45 28.62 68.60 1.96 48.41 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 23 C -0.31 -14.23 9.01 22.52 0.20 -14.03 16 24 C -0.16 -3.09 5.74 30.68 0.18 -2.91 16 25 C 0.06 1.35 6.68 72.01 0.48 1.83 16 26 O -0.39 -8.72 9.94 -148.98 -1.48 -10.20 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 1.00 7.82 -2.39 -0.02 0.98 16 29 H 0.07 0.97 8.14 -2.38 -0.02 0.96 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.39 11.47 7.09 -92.71 -0.66 10.81 16 35 H 0.14 3.26 6.19 -2.91 -0.02 3.24 16 36 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 38 H 0.28 15.83 8.31 -92.70 -0.77 15.06 16 39 H 0.10 5.03 5.63 -2.91 -0.02 5.01 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 1.52 7.80 -2.39 -0.02 1.50 16 42 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.03 0.80 7.75 -2.38 -0.02 0.78 16 Total: -1.00 -68.49 342.03 3.76 -64.73 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.35 Total: 28.34 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: 4.27 Total: -39.15 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -1.16 Total: -78.13 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -1.68 Total: -24.20 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.96 Total: 48.41 kcal Total: -68.49 3.76 -64.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070353119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.330 kcal (2) G-P(sol) polarization free energy of solvation -68.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds