Wall clock time and date at job start Tue Mar 31 2020 07:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47221 * 2 1 4 4 H 1.09000 * 109.47611 * 53.74439 * 3 2 1 5 5 C 1.50704 * 109.47305 * 173.74940 * 3 2 1 6 6 C 1.38238 * 120.00293 * 70.32781 * 5 3 2 7 7 C 1.38238 * 119.99782 * 179.79149 * 6 5 3 8 8 C 1.38232 * 119.99979 * 0.44163 * 7 6 5 9 9 C 1.38239 * 120.00209 * 359.80690 * 8 7 6 10 10 C 1.38234 * 119.99759 * 359.97438 * 9 8 7 11 11 N 1.46903 * 109.46921 * 293.74399 * 3 2 1 12 12 C 1.46904 * 111.00207 * 207.77079 * 11 3 2 13 13 C 1.50704 * 109.47241 * 287.30633 * 12 11 3 14 14 H 1.08002 * 119.99854 * 4.79170 * 13 12 11 15 15 C 1.37868 * 120.00201 * 184.78477 * 13 12 11 16 16 N 1.31518 * 120.00206 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00281 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47211 * 90.00174 * 17 15 13 19 19 H 1.48498 * 109.47319 * 210.00697 * 17 15 13 20 20 H 1.48500 * 109.47046 * 330.00537 * 17 15 13 21 21 C 1.46893 * 111.00265 * 331.72328 * 11 3 2 22 22 C 1.50701 * 109.47408 * 165.43675 * 21 11 3 23 23 O 1.20823 * 119.99684 * 357.07532 * 22 21 11 24 24 O 1.34230 * 120.00501 * 177.07351 * 22 21 11 25 25 C 1.45190 * 117.00548 * 180.02562 * 24 22 21 26 26 H 1.09000 * 109.47295 * 64.08480 * 1 2 3 27 27 H 1.09001 * 109.47555 * 184.08617 * 1 2 3 28 28 H 1.09000 * 109.47129 * 304.08469 * 1 2 3 29 29 H 1.08999 * 109.47367 * 239.99854 * 2 1 3 30 30 H 1.09002 * 109.47447 * 120.00100 * 2 1 3 31 31 H 1.07997 * 119.99859 * 359.97438 * 6 5 3 32 32 H 1.08002 * 119.99704 * 180.27069 * 7 6 5 33 33 H 1.08004 * 119.99591 * 179.83737 * 8 7 6 34 34 H 1.07997 * 119.99638 * 180.02562 * 9 8 7 35 35 H 1.07998 * 119.99925 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.46955 * 47.30362 * 12 11 3 37 37 H 1.08998 * 109.47018 * 167.30607 * 12 11 3 38 38 H 0.96999 * 120.00135 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.47643 * 285.43872 * 21 11 3 40 40 H 1.09009 * 109.47059 * 45.44302 * 21 11 3 41 41 H 1.09002 * 109.47340 * 180.02562 * 25 24 22 42 42 H 1.09004 * 109.47053 * 299.99963 * 25 24 22 43 43 H 1.08995 * 109.47136 * 59.99616 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5881 1.9876 0.8287 5 6 3.5390 1.4453 0.1547 6 6 4.3416 1.0029 -0.8803 7 6 5.7168 1.0096 -0.7399 8 6 6.2891 1.4500 0.4388 9 6 5.4863 1.8876 1.4757 10 6 4.1113 1.8851 1.3336 11 7 1.6774 2.0900 -1.2678 12 6 2.6338 3.1514 -1.6093 13 6 2.4211 4.3319 -0.6969 14 1 1.7060 4.2687 0.1100 15 6 3.1393 5.4924 -0.8922 16 7 4.0098 5.5695 -1.8750 17 14 2.8751 6.9559 0.2383 18 1 3.8081 6.8664 1.3901 19 1 3.1319 8.2124 -0.5104 20 1 1.4752 6.9522 0.7337 21 6 1.5757 1.1043 -2.3522 22 6 0.8678 1.7239 -3.5295 23 8 0.4403 2.8513 -3.4524 24 8 0.7122 1.0233 -4.6638 25 6 0.0212 1.6834 -5.7569 26 1 -0.3634 0.4491 -0.9243 27 1 -0.3634 -1.0250 0.0732 28 1 -0.3633 0.5759 0.8511 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8943 0.6549 -1.7996 32 1 6.3440 0.6681 -1.5501 33 1 7.3634 1.4528 0.5494 34 1 5.9335 2.2320 2.3964 35 1 3.4841 2.2266 2.1439 36 1 3.6504 2.7772 -1.4881 37 1 2.4808 3.4594 -2.6436 38 1 4.5154 6.3858 -2.0122 39 1 2.5753 0.7908 -2.6532 40 1 1.0125 0.2382 -2.0044 41 1 -0.0366 1.0083 -6.6107 42 1 -0.9859 1.9540 -5.4394 43 1 0.5667 2.5832 -6.0410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090559729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:40 Heat of formation + Delta-G solvation = -48.727672 kcal Electronic energy + Delta-G solvation = -24668.517298 eV Core-core repulsion = 21293.248347 eV Total energy + Delta-G solvation = -3375.268951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.76106 -40.74316 -38.37039 -37.22517 -35.04644 -33.42055 -32.22956 -31.61187 -30.19609 -28.66662 -27.69382 -25.85625 -23.75647 -23.56644 -22.82726 -21.98305 -20.36447 -18.84019 -18.59850 -17.71196 -17.62244 -17.29365 -16.50677 -16.29767 -16.13009 -15.74142 -15.64177 -14.83984 -14.61173 -14.36208 -14.26041 -14.14963 -13.93799 -13.41733 -13.28030 -13.01811 -12.94216 -12.91841 -12.64908 -12.59873 -12.44784 -12.17984 -11.98093 -11.77771 -11.73854 -11.60385 -11.48748 -11.18711 -11.13561 -10.52747 -9.66809 -9.30652 -8.91350 -8.11257 -6.14757 0.61127 0.66511 1.31805 1.35976 1.38131 1.48257 1.75323 2.42457 3.00845 3.21503 3.36134 3.81363 3.87713 4.04566 4.12903 4.18884 4.24512 4.29583 4.30522 4.33997 4.35705 4.49929 4.58609 4.69344 4.74448 4.82371 4.90266 4.92958 5.13851 5.22519 5.26139 5.31355 5.35902 5.39904 5.43046 5.54482 5.67039 5.71761 5.73164 5.84321 6.15497 6.28036 6.41739 6.57432 6.93783 6.97147 7.49734 8.99537 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010571 B = 0.007741 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.149875 B = 3616.346002 C = 4928.498355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.134 3.866 4 H 0.075 0.925 5 C -0.088 4.088 6 C -0.126 4.126 7 C -0.134 4.134 8 C -0.134 4.134 9 C -0.130 4.130 10 C -0.119 4.119 11 N -0.519 5.519 12 C 0.196 3.804 13 C -0.491 4.491 14 H 0.050 0.950 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.951 3.049 18 H -0.271 1.271 19 H -0.287 1.287 20 H -0.271 1.271 21 C 0.041 3.959 22 C 0.451 3.549 23 O -0.518 6.518 24 O -0.366 6.366 25 C 0.030 3.970 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.121 0.879 36 H 0.015 0.985 37 H -0.010 1.010 38 H 0.257 0.743 39 H 0.077 0.923 40 H 0.156 0.844 41 H 0.140 0.860 42 H 0.060 0.940 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 -15.413 1.013 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.026 3.974 4 H 0.093 0.907 5 C -0.090 4.090 6 C -0.144 4.144 7 C -0.152 4.152 8 C -0.152 4.152 9 C -0.148 4.148 10 C -0.138 4.138 11 N -0.244 5.244 12 C 0.071 3.929 13 C -0.530 4.530 14 H 0.069 0.931 15 C -0.194 4.194 16 N -0.575 5.575 17 Si 0.777 3.223 18 H -0.196 1.196 19 H -0.213 1.213 20 H -0.195 1.195 21 C -0.087 4.087 22 C 0.293 3.707 23 O -0.404 6.404 24 O -0.283 6.283 25 C -0.063 4.063 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.135 0.865 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.139 0.861 36 H 0.032 0.968 37 H 0.008 0.992 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.173 0.827 41 H 0.158 0.842 42 H 0.079 0.921 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.374 -14.719 0.975 14.941 hybrid contribution 0.706 1.476 -0.080 1.638 sum -1.668 -13.243 0.895 13.378 Atomic orbital electron populations 1.21803 0.94313 1.02305 1.01971 1.21917 0.97096 0.93357 1.03693 1.20821 0.88993 0.95450 0.92125 0.90707 1.20448 0.97070 0.97201 0.94274 1.21133 0.94508 1.00631 0.98119 1.21286 0.94777 1.00782 0.98315 1.21315 1.00506 0.99761 0.93649 1.21328 0.93643 0.99890 0.99904 1.21119 0.95582 0.99343 0.97761 1.62084 1.51207 1.09939 1.01132 1.19797 0.89793 0.88726 0.94599 1.21236 1.20321 0.98094 1.13366 0.93137 1.25673 0.95446 1.01204 0.97029 1.70076 1.26933 1.28164 1.32346 0.85648 0.78562 0.78980 0.79064 1.19612 1.21339 1.19539 1.22300 1.00428 0.97188 0.88771 1.24271 0.77463 0.84580 0.84354 1.90719 1.46496 1.20553 1.82670 1.86451 1.71729 1.46885 1.23205 1.23470 0.96137 0.99144 0.87531 0.93393 0.90353 0.92882 0.90238 0.89713 0.86507 0.84905 0.84400 0.84712 0.86144 0.96801 0.99166 0.93378 0.90586 0.82665 0.84206 0.92109 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.29 71.98 0.67 -2.70 16 2 C -0.12 -3.07 4.72 30.59 0.14 -2.93 16 3 C 0.13 4.71 2.20 44.17 0.10 4.80 16 4 H 0.07 2.86 7.89 -2.39 -0.02 2.84 16 5 C -0.09 -3.23 3.33 -19.86 -0.07 -3.29 16 6 C -0.13 -4.45 6.81 22.27 0.15 -4.30 16 7 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 8 C -0.13 -4.20 10.05 22.27 0.22 -3.97 16 9 C -0.13 -4.21 10.05 22.27 0.22 -3.99 16 10 C -0.12 -4.26 9.67 22.27 0.22 -4.04 16 11 N -0.52 -21.81 4.04 -884.46 -3.58 -25.38 16 12 C 0.20 10.43 3.70 85.56 0.32 10.74 16 13 C -0.49 -28.69 8.76 25.60 0.22 -28.46 16 14 H 0.05 2.95 7.77 -2.91 -0.02 2.92 16 15 C 0.00 0.20 5.46 84.65 0.46 0.66 16 16 N -0.93 -58.41 13.29 21.44 0.28 -58.12 16 17 Si 0.95 46.86 29.54 68.60 2.03 48.89 16 18 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 20 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 21 C 0.04 1.41 3.72 85.56 0.32 1.73 16 22 C 0.45 17.48 7.45 71.24 0.53 18.01 16 23 O -0.52 -25.17 14.79 21.97 0.32 -24.85 16 24 O -0.37 -11.45 10.56 -51.42 -0.54 -12.00 16 25 C 0.03 0.76 10.56 113.37 1.20 1.96 16 26 H 0.05 1.25 6.32 -2.39 -0.02 1.24 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.78 5.95 -2.39 -0.01 1.77 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.12 3.90 4.94 -2.91 -0.01 3.88 16 32 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 35 H 0.12 4.02 7.97 -2.91 -0.02 3.99 16 36 H 0.01 0.79 4.26 -2.39 -0.01 0.78 16 37 H -0.01 -0.60 6.35 -2.39 -0.02 -0.62 16 38 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 39 H 0.08 2.49 5.31 -2.39 -0.01 2.48 16 40 H 0.16 4.15 3.81 -2.38 -0.01 4.14 16 41 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.06 1.51 8.13 -2.38 -0.02 1.49 16 43 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 Total: -1.00 -75.43 341.24 4.46 -70.97 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 1.01 Total: 20.41 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 4.93 Total: -19.93 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -3.29 Total: -83.51 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.22 Total: -36.84 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -75.43 4.46 -70.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090559729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.244 kcal (2) G-P(sol) polarization free energy of solvation -75.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds