Wall clock time and date at job start Tue Mar 31 2020 07:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47080 * 2 1 4 4 H 1.08996 * 109.47067 * 304.99744 * 3 2 1 5 5 C 1.53000 * 109.47098 * 65.00276 * 3 2 1 6 6 C 1.53002 * 109.46745 * 184.99815 * 3 2 1 7 7 N 1.46505 * 109.47046 * 175.00015 * 6 3 2 8 8 C 1.46499 * 120.00176 * 270.00123 * 7 6 3 9 9 C 1.34776 * 119.99877 * 89.99796 * 7 6 3 10 10 O 1.21587 * 120.00141 * 355.22572 * 9 7 6 11 11 C 1.47534 * 120.00127 * 175.21932 * 9 7 6 12 12 C 1.39664 * 120.19664 * 316.75063 * 11 9 7 13 13 C 1.37828 * 119.92137 * 179.97438 * 12 11 9 14 14 C 1.38578 * 120.32121 * 0.02562 * 13 12 11 15 15 C 1.38019 * 120.40005 * 0.02562 * 14 13 12 16 16 C 1.38830 * 120.07494 * 359.95770 * 15 14 13 17 17 O 1.35523 * 120.16501 * 180.02562 * 16 15 14 18 18 C 1.34818 * 116.99558 * 355.43028 * 17 16 15 19 19 H 1.07994 * 120.00137 * 4.99190 * 18 17 16 20 20 C 1.38696 * 119.99867 * 184.98990 * 18 17 16 21 21 N 1.31524 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00219 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46821 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46993 * 119.99963 * 22 20 18 25 25 H 1.48493 * 109.46842 * 240.00077 * 22 20 18 26 26 H 1.09004 * 109.47381 * 299.99939 * 1 2 3 27 27 H 1.09003 * 109.47036 * 60.00289 * 1 2 3 28 28 H 1.09001 * 109.47548 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46860 * 239.99651 * 2 1 3 30 30 H 1.08998 * 109.46998 * 120.00196 * 2 1 3 31 31 H 1.08996 * 109.47596 * 59.99792 * 5 3 2 32 32 H 1.09001 * 109.47278 * 179.97438 * 5 3 2 33 33 H 1.09001 * 109.46965 * 299.99304 * 5 3 2 34 34 H 1.08998 * 109.47100 * 55.00190 * 6 3 2 35 35 H 1.08994 * 109.47371 * 294.99882 * 6 3 2 36 36 H 1.08996 * 109.47327 * 269.24305 * 8 7 6 37 37 H 1.09011 * 109.46977 * 29.24516 * 8 7 6 38 38 H 1.08998 * 109.47328 * 149.24121 * 8 7 6 39 39 H 1.07996 * 120.04397 * 0.02562 * 12 11 9 40 40 H 1.07996 * 119.84330 * 180.28948 * 13 12 11 41 41 H 1.08000 * 119.79695 * 180.02562 * 14 13 12 42 42 H 1.08003 * 119.96376 * 179.97438 * 15 14 13 43 43 H 0.96998 * 120.00101 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4442 -0.1257 7 7 4.0433 2.8237 -0.2458 8 6 4.1786 3.4396 -1.5681 9 6 4.3590 3.5261 0.8603 10 8 4.1651 3.0469 1.9608 11 6 4.9401 4.8765 0.7358 12 6 5.9383 5.1273 -0.2083 13 6 6.4768 6.3911 -0.3201 14 6 6.0331 7.4158 0.5005 15 6 5.0480 7.1824 1.4387 16 6 4.4939 5.9158 1.5653 17 8 3.5262 5.6847 2.4855 18 6 3.2120 6.7025 3.3120 19 1 3.6658 7.6723 3.1711 20 6 2.3059 6.5041 4.3431 21 7 1.7528 5.3231 4.5144 22 14 1.8700 7.9144 5.4879 23 1 2.6215 9.1299 5.0842 24 1 0.4121 8.1849 5.4072 25 1 2.2294 7.5497 6.8817 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.0698 1.5875 2.1492 32 1 1.9990 3.1540 1.3076 33 1 0.5489 2.1252 1.3969 34 1 3.8570 0.8799 -1.0113 35 1 4.0029 0.9835 0.7596 36 1 5.1841 3.2630 -1.9500 37 1 3.4490 3.0016 -2.2493 38 1 4.0033 4.5125 -1.4888 39 1 6.2873 4.3323 -0.8505 40 1 7.2453 6.5849 -1.0537 41 1 6.4606 8.4030 0.4054 42 1 4.7078 7.9861 2.0750 43 1 1.1195 5.1842 5.2358 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110330625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:57 Heat of formation + Delta-G solvation = -42.010287 kcal Electronic energy + Delta-G solvation = -24149.031726 eV Core-core repulsion = 20774.054063 eV Total energy + Delta-G solvation = -3374.977663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.87078 -38.46010 -36.48835 -36.13568 -34.36252 -32.33108 -30.85915 -29.37957 -28.93547 -26.83402 -26.00499 -25.37376 -23.68889 -22.15754 -21.40237 -19.74546 -18.98678 -18.03328 -17.09845 -16.25068 -15.64224 -15.35998 -14.76642 -14.71107 -14.33474 -14.07520 -13.76079 -13.69037 -13.46369 -13.05932 -12.83768 -12.57952 -12.40460 -12.32528 -11.99218 -11.70380 -11.57828 -11.43785 -11.28354 -11.06799 -11.05509 -10.89161 -10.69566 -10.56969 -10.43416 -10.25113 -10.22864 -9.55093 -8.91346 -8.85177 -8.21127 -8.09610 -7.30693 -6.44662 -4.04527 1.81607 2.31761 3.11681 3.13181 3.18544 3.47450 3.68449 3.93907 4.55010 5.02741 5.05111 5.05543 5.17078 5.18488 5.29750 5.41765 5.50521 5.52254 5.65353 5.72208 5.74489 5.86414 5.90139 5.95235 5.97458 6.02307 6.10383 6.17535 6.23317 6.34638 6.39756 6.58695 6.60461 6.68163 6.78222 6.94837 7.05524 7.08879 7.22337 7.26615 7.31111 7.70223 7.91002 8.01015 8.96498 9.02612 9.66127 10.70168 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.006404 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.512067 B = 4371.411101 C = 6420.699113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.107 4.107 4 H 0.064 0.936 5 C -0.134 4.134 6 C 0.126 3.874 7 N -0.624 5.624 8 C 0.085 3.915 9 C 0.569 3.431 10 O -0.505 6.505 11 C -0.219 4.219 12 C -0.042 4.042 13 C -0.228 4.228 14 C -0.054 4.054 15 C -0.237 4.237 16 C 0.188 3.812 17 O -0.143 6.143 18 C -0.400 4.400 19 H 0.094 0.906 20 C 0.044 3.956 21 N -0.839 5.839 22 Si 0.940 3.060 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.275 1.275 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 -4.378 -11.686 12.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.127 4.127 4 H 0.082 0.918 5 C -0.191 4.191 6 C 0.003 3.997 7 N -0.360 5.360 8 C -0.059 4.059 9 C 0.359 3.641 10 O -0.379 6.379 11 C -0.224 4.224 12 C -0.061 4.061 13 C -0.247 4.247 14 C -0.073 4.073 15 C -0.257 4.257 16 C 0.130 3.870 17 O -0.043 6.043 18 C -0.476 4.476 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.471 5.471 22 Si 0.764 3.236 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.200 1.200 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.955 -4.962 -10.822 12.064 hybrid contribution -0.181 0.877 0.414 0.986 sum 1.773 -4.085 -10.408 11.321 Atomic orbital electron populations 1.21796 0.95996 1.00983 1.02127 1.21499 0.95960 0.96414 1.01483 1.21600 0.95503 0.95843 0.99711 0.91787 1.21785 0.99577 1.02216 0.95554 1.21420 0.93827 0.82540 1.01928 1.47730 1.67923 1.13869 1.06474 1.21803 1.00380 0.99621 0.84079 1.18190 0.77364 0.84962 0.83612 1.90830 1.51829 1.69691 1.25542 1.18792 1.06108 0.92885 1.04625 1.20870 0.94067 0.96470 0.94701 1.20477 1.05730 0.93663 1.04799 1.20886 0.94702 0.97968 0.93735 1.21137 1.02817 0.97482 1.04221 1.19211 0.87417 0.91653 0.88697 1.84033 1.43552 1.38928 1.37761 1.21449 1.26427 0.90362 1.09347 0.88884 1.25340 0.95936 0.97974 0.97001 1.70097 1.25769 1.21342 1.29869 0.85670 0.78642 0.79677 0.79567 1.19024 1.20104 1.20030 0.92140 0.93083 0.93247 0.92559 0.91911 0.92457 0.91378 0.93971 0.91517 0.90252 0.93283 0.92058 0.90600 0.86553 0.87291 0.87249 0.85124 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.67 37.16 0.36 -1.41 16 2 C -0.12 -1.42 5.40 -26.73 -0.14 -1.56 16 3 C -0.11 -1.60 2.59 -90.62 -0.24 -1.84 16 4 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 5 C -0.13 -2.63 7.63 37.16 0.28 -2.35 16 6 C 0.13 1.89 4.99 -4.04 -0.02 1.87 16 7 N -0.62 -10.61 2.76 -182.81 -0.50 -11.12 16 8 C 0.08 1.11 8.98 59.85 0.54 1.64 16 9 C 0.57 12.48 5.79 -12.47 -0.07 12.41 16 10 O -0.51 -13.24 13.71 -8.65 -0.12 -13.36 16 11 C -0.22 -4.76 4.91 -104.81 -0.51 -5.28 16 12 C -0.04 -0.74 7.85 -39.20 -0.31 -1.05 16 13 C -0.23 -3.74 10.03 -39.61 -0.40 -4.13 16 14 C -0.05 -0.96 10.03 -39.54 -0.40 -1.36 16 15 C -0.24 -5.09 9.16 -39.44 -0.36 -5.46 16 16 C 0.19 4.64 6.63 -38.60 -0.26 4.38 16 17 O -0.14 -4.16 8.63 -13.16 -0.11 -4.27 16 18 C -0.40 -11.24 9.49 30.90 0.29 -10.95 16 19 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 20 C 0.04 1.23 5.49 -17.51 -0.10 1.13 16 21 N -0.84 -24.93 13.67 55.48 0.76 -24.17 16 22 Si 0.94 20.58 29.55 -169.99 -5.02 15.55 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 26 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 32 H 0.07 1.63 5.96 -51.93 -0.31 1.33 16 33 H 0.04 0.77 6.57 -51.93 -0.34 0.43 16 34 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.08 1.33 7.49 -51.93 -0.39 0.94 16 36 H 0.05 0.54 6.94 -51.93 -0.36 0.18 16 37 H 0.06 0.66 8.07 -51.92 -0.42 0.24 16 38 H 0.08 1.09 6.40 -51.93 -0.33 0.76 16 39 H 0.12 1.68 6.16 -52.49 -0.32 1.36 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.13 2.78 5.63 -52.48 -0.30 2.49 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 344.40 15.07 5.19 5.19 Total: -1.00 -32.91 344.40 -7.45 -40.35 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.31 Total: 5.75 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.33 Total: -13.93 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.25 Total: -35.29 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.23 Total: -17.63 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.91 -7.45 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110330625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.656 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds