Wall clock time and date at job start Tue Mar 31 2020 07:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47080 * 2 1 4 4 H 1.08996 * 109.47067 * 304.99744 * 3 2 1 5 5 C 1.53000 * 109.47098 * 65.00276 * 3 2 1 6 6 C 1.53002 * 109.46745 * 184.99815 * 3 2 1 7 7 N 1.46505 * 109.47046 * 175.00015 * 6 3 2 8 8 C 1.46499 * 120.00176 * 270.00123 * 7 6 3 9 9 C 1.34776 * 119.99877 * 89.99796 * 7 6 3 10 10 O 1.21587 * 120.00141 * 355.22572 * 9 7 6 11 11 C 1.47534 * 120.00127 * 175.21932 * 9 7 6 12 12 C 1.39664 * 120.19664 * 316.75063 * 11 9 7 13 13 C 1.37828 * 119.92137 * 179.97438 * 12 11 9 14 14 C 1.38578 * 120.32121 * 0.02562 * 13 12 11 15 15 C 1.38019 * 120.40005 * 0.02562 * 14 13 12 16 16 C 1.38830 * 120.07494 * 359.95770 * 15 14 13 17 17 O 1.35523 * 120.16501 * 180.02562 * 16 15 14 18 18 C 1.34818 * 116.99558 * 355.43028 * 17 16 15 19 19 H 1.07994 * 120.00137 * 4.99190 * 18 17 16 20 20 C 1.38696 * 119.99867 * 184.98990 * 18 17 16 21 21 N 1.31524 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00219 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46821 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46993 * 119.99963 * 22 20 18 25 25 H 1.48493 * 109.46842 * 240.00077 * 22 20 18 26 26 H 1.09004 * 109.47381 * 299.99939 * 1 2 3 27 27 H 1.09003 * 109.47036 * 60.00289 * 1 2 3 28 28 H 1.09001 * 109.47548 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46860 * 239.99651 * 2 1 3 30 30 H 1.08998 * 109.46998 * 120.00196 * 2 1 3 31 31 H 1.08996 * 109.47596 * 59.99792 * 5 3 2 32 32 H 1.09001 * 109.47278 * 179.97438 * 5 3 2 33 33 H 1.09001 * 109.46965 * 299.99304 * 5 3 2 34 34 H 1.08998 * 109.47100 * 55.00190 * 6 3 2 35 35 H 1.08994 * 109.47371 * 294.99882 * 6 3 2 36 36 H 1.08996 * 109.47327 * 269.24305 * 8 7 6 37 37 H 1.09011 * 109.46977 * 29.24516 * 8 7 6 38 38 H 1.08998 * 109.47328 * 149.24121 * 8 7 6 39 39 H 1.07996 * 120.04397 * 0.02562 * 12 11 9 40 40 H 1.07996 * 119.84330 * 180.28948 * 13 12 11 41 41 H 1.08000 * 119.79695 * 180.02562 * 14 13 12 42 42 H 1.08003 * 119.96376 * 179.97438 * 15 14 13 43 43 H 0.96998 * 120.00101 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4442 -0.1257 7 7 4.0433 2.8237 -0.2458 8 6 4.1786 3.4396 -1.5681 9 6 4.3590 3.5261 0.8603 10 8 4.1651 3.0469 1.9608 11 6 4.9401 4.8765 0.7358 12 6 5.9383 5.1273 -0.2083 13 6 6.4768 6.3911 -0.3201 14 6 6.0331 7.4158 0.5005 15 6 5.0480 7.1824 1.4387 16 6 4.4939 5.9158 1.5653 17 8 3.5262 5.6847 2.4855 18 6 3.2120 6.7025 3.3120 19 1 3.6658 7.6723 3.1711 20 6 2.3059 6.5041 4.3431 21 7 1.7528 5.3231 4.5144 22 14 1.8700 7.9144 5.4879 23 1 2.6215 9.1299 5.0842 24 1 0.4121 8.1849 5.4072 25 1 2.2294 7.5497 6.8817 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.0698 1.5875 2.1492 32 1 1.9990 3.1540 1.3076 33 1 0.5489 2.1252 1.3969 34 1 3.8570 0.8799 -1.0113 35 1 4.0029 0.9835 0.7596 36 1 5.1841 3.2630 -1.9500 37 1 3.4490 3.0016 -2.2493 38 1 4.0033 4.5125 -1.4888 39 1 6.2873 4.3323 -0.8505 40 1 7.2453 6.5849 -1.0537 41 1 6.4606 8.4030 0.4054 42 1 4.7078 7.9861 2.0750 43 1 1.1195 5.1842 5.2358 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110330625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:56 Heat of formation + Delta-G solvation = -62.893912 kcal Electronic energy + Delta-G solvation = -24149.937308 eV Core-core repulsion = 20774.054063 eV Total energy + Delta-G solvation = -3375.883245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47049 -40.10806 -38.11577 -37.61528 -35.75503 -34.32546 -32.30354 -30.66690 -30.55566 -28.20047 -27.48142 -27.24311 -25.00149 -23.60170 -22.98525 -21.05241 -20.45900 -19.88000 -18.76380 -17.86419 -17.16797 -16.82060 -16.38593 -16.10178 -15.81898 -15.58062 -15.45755 -15.26216 -14.85695 -14.43476 -14.27948 -14.13543 -13.83656 -13.60330 -13.56627 -13.22505 -13.00374 -12.84538 -12.76420 -12.60051 -12.50889 -12.24077 -12.13541 -12.10545 -11.90912 -11.57838 -11.42235 -11.38934 -10.84668 -10.58049 -9.76857 -9.47768 -9.02702 -8.45868 -6.16101 0.24323 0.72638 1.30660 1.40877 1.50036 1.93508 2.14209 2.25469 2.84699 3.17213 3.46065 3.75867 3.87752 3.97410 4.04841 4.11036 4.26946 4.37431 4.40214 4.54353 4.55532 4.60812 4.64629 4.69730 4.77336 4.79922 4.87858 4.96150 5.00362 5.04801 5.08719 5.14207 5.16340 5.19245 5.30765 5.48505 5.52138 5.54646 5.59991 5.71074 5.79754 5.96176 6.18249 6.51561 6.94818 7.43409 7.78191 8.75053 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.006404 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.512067 B = 4371.411101 C = 6420.699113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.097 4.097 4 H 0.076 0.924 5 C -0.121 4.121 6 C 0.122 3.878 7 N -0.616 5.616 8 C 0.076 3.924 9 C 0.558 3.442 10 O -0.567 6.567 11 C -0.234 4.234 12 C -0.034 4.034 13 C -0.196 4.196 14 C -0.046 4.046 15 C -0.255 4.255 16 C 0.145 3.855 17 O -0.205 6.205 18 C -0.421 4.421 19 H 0.105 0.895 20 C -0.022 4.022 21 N -0.907 5.907 22 Si 1.019 2.981 23 H -0.246 1.246 24 H -0.268 1.268 25 H -0.271 1.271 26 H 0.035 0.965 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.026 0.974 32 H 0.016 0.984 33 H 0.043 0.957 34 H 0.119 0.881 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.121 0.879 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 -3.925 -15.985 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.117 4.117 4 H 0.094 0.906 5 C -0.178 4.178 6 C 0.000 4.000 7 N -0.349 5.349 8 C -0.066 4.066 9 C 0.348 3.652 10 O -0.446 6.446 11 C -0.239 4.239 12 C -0.052 4.052 13 C -0.214 4.214 14 C -0.064 4.064 15 C -0.275 4.275 16 C 0.092 3.908 17 O -0.109 6.109 18 C -0.497 4.497 19 H 0.122 0.878 20 C -0.221 4.221 21 N -0.543 5.543 22 Si 0.838 3.162 23 H -0.169 1.169 24 H -0.193 1.193 25 H -0.196 1.196 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.137 0.863 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.174 0.826 40 H 0.181 0.819 41 H 0.170 0.830 42 H 0.139 0.861 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.327 -4.496 -15.234 16.462 hybrid contribution -0.627 0.712 1.387 1.681 sum 3.699 -3.784 -13.846 14.823 Atomic orbital electron populations 1.21800 0.95593 1.02121 1.01423 1.21468 0.96275 0.94152 1.02776 1.21553 0.95911 0.97508 0.96702 0.90564 1.21617 0.99138 0.99245 0.97806 1.21632 0.93363 0.81803 1.03189 1.47798 1.66054 1.14314 1.06768 1.22121 1.03545 0.98727 0.82181 1.18490 0.77224 0.85390 0.84046 1.90798 1.54517 1.71066 1.28234 1.19239 1.07146 0.92317 1.05167 1.21343 0.91959 0.98434 0.93507 1.21162 1.04500 0.92186 1.03577 1.21392 0.92684 1.00525 0.91840 1.21275 1.04329 0.96074 1.05772 1.19971 0.87956 0.94036 0.88870 1.84035 1.46736 1.39905 1.40200 1.21956 1.26861 0.90975 1.09937 0.87790 1.26679 0.95656 1.01041 0.98678 1.70292 1.28048 1.24412 1.31545 0.84532 0.78668 0.76283 0.76681 1.16942 1.19272 1.19637 0.94565 0.92091 0.91200 0.88937 0.92835 0.95431 0.96515 0.93845 0.86257 0.92809 0.89705 0.88925 0.92177 0.82564 0.81905 0.83010 0.86118 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.67 71.98 0.70 -2.67 16 2 C -0.11 -2.49 5.40 30.59 0.17 -2.32 16 3 C -0.10 -2.90 2.59 -10.79 -0.03 -2.92 16 4 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 5 C -0.12 -5.20 7.63 71.98 0.55 -4.65 16 6 C 0.12 3.52 4.99 86.38 0.43 3.95 16 7 N -0.62 -20.44 2.76 -850.54 -2.35 -22.79 16 8 C 0.08 1.70 8.98 127.77 1.15 2.85 16 9 C 0.56 25.62 5.79 86.70 0.50 26.12 16 10 O -0.57 -32.56 13.71 9.34 0.13 -32.44 16 11 C -0.23 -10.31 4.91 -19.99 -0.10 -10.41 16 12 C -0.03 -1.07 7.85 22.52 0.18 -0.89 16 13 C -0.20 -5.33 10.03 22.25 0.22 -5.11 16 14 C -0.05 -1.47 10.03 22.30 0.22 -1.24 16 15 C -0.26 -11.07 9.16 22.36 0.20 -10.86 16 16 C 0.15 7.55 6.63 22.91 0.15 7.71 16 17 O -0.20 -13.05 8.63 -6.81 -0.06 -13.10 16 18 C -0.42 -25.64 9.49 67.93 0.64 -25.00 16 19 H 0.10 5.73 5.20 -2.91 -0.02 5.72 16 20 C -0.02 -1.30 5.49 84.85 0.47 -0.83 16 21 N -0.91 -59.26 13.67 21.62 0.30 -58.96 16 22 Si 1.02 44.83 29.55 68.60 2.03 46.86 16 23 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 26 H 0.04 0.96 6.57 -2.38 -0.02 0.94 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.03 1.29 7.93 -2.39 -0.02 1.27 16 32 H 0.02 0.85 5.96 -2.39 -0.01 0.84 16 33 H 0.04 1.77 6.57 -2.39 -0.02 1.75 16 34 H 0.12 2.24 8.07 -2.39 -0.02 2.22 16 35 H 0.05 1.85 7.49 -2.39 -0.02 1.83 16 36 H 0.08 1.34 6.94 -2.39 -0.02 1.33 16 37 H 0.09 1.54 8.07 -2.38 -0.02 1.53 16 38 H 0.06 1.56 6.40 -2.39 -0.02 1.55 16 39 H 0.16 3.61 6.16 -2.91 -0.02 3.59 16 40 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 41 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 42 H 0.12 5.34 5.63 -2.91 -0.02 5.32 16 43 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 Total: -1.00 -86.71 344.40 6.50 -80.21 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 1.00 Total: 26.51 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 5.46 Total: -26.28 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -2.05 Total: -81.75 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: 0.07 Total: -45.54 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -86.71 6.50 -80.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110330625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.313 kcal (2) G-P(sol) polarization free energy of solvation -86.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds