Wall clock time and date at job start Tue Mar 31 2020 07:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47269 * 2 1 4 4 C 1.52995 * 109.47265 * 239.99315 * 2 1 3 5 5 O 1.45202 * 109.47124 * 119.99532 * 2 1 3 6 6 C 1.34658 * 116.99798 * 60.00125 * 5 2 1 7 7 O 1.21505 * 120.00005 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99866 * 180.02562 * 6 5 2 9 9 C 1.39954 * 119.99961 * 184.61998 * 8 6 5 10 10 C 1.38861 * 120.06968 * 144.90704 * 9 8 6 11 11 C 1.38122 * 119.92666 * 180.27430 * 10 9 8 12 12 C 1.38275 * 120.07058 * 359.49882 * 11 10 9 13 13 C 1.50704 * 119.93239 * 180.23222 * 12 11 10 14 14 C 1.53000 * 109.46797 * 270.27172 * 13 12 11 15 15 C 1.50699 * 109.46793 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00230 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99923 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00019 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99964 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47380 * 59.99879 * 19 17 15 21 21 H 1.48504 * 109.47306 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47271 * 299.99623 * 19 17 15 23 23 C 1.38279 * 120.13876 * 0.50095 * 12 11 10 24 24 C 1.38110 * 120.07361 * 359.75547 * 23 12 11 25 25 H 1.08999 * 109.46990 * 300.00675 * 1 2 3 26 26 H 1.08997 * 109.46791 * 60.00403 * 1 2 3 27 27 H 1.08997 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47480 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47186 * 299.99726 * 3 2 1 30 30 H 1.08999 * 109.47665 * 59.99738 * 3 2 1 31 31 H 1.08997 * 109.47810 * 300.00253 * 4 2 1 32 32 H 1.09005 * 109.46684 * 60.00585 * 4 2 1 33 33 H 1.09000 * 109.47405 * 179.97438 * 4 2 1 34 34 H 0.97001 * 120.00360 * 4.61615 * 8 6 5 35 35 H 1.07993 * 120.03707 * 0.02562 * 10 9 8 36 36 H 1.08000 * 119.96032 * 179.74305 * 11 10 9 37 37 H 1.08999 * 109.46393 * 30.26891 * 13 12 11 38 38 H 1.08993 * 109.46958 * 150.27016 * 13 12 11 39 39 H 1.09000 * 109.47130 * 299.99813 * 14 13 12 40 40 H 1.09001 * 109.47235 * 60.00194 * 14 13 12 41 41 H 0.96993 * 119.99885 * 180.02562 * 18 17 15 42 42 H 1.08008 * 119.96816 * 179.76985 * 23 12 11 43 43 H 1.07997 * 120.04347 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9724 1.3385 7 8 0.9508 -2.5095 0.5042 8 7 2.0671 -2.6654 2.4173 9 6 1.7727 -4.0291 2.5288 10 6 2.6850 -4.8916 3.1222 11 6 2.3938 -6.2378 3.2255 12 6 1.1911 -6.7252 2.7481 13 6 0.8745 -8.1938 2.8672 14 6 1.3798 -8.9269 1.6229 15 6 1.0637 -10.3955 1.7422 16 1 0.5531 -10.7687 2.6178 17 6 1.4264 -11.2629 0.7337 18 7 2.0477 -10.8085 -0.3327 19 14 1.0339 -13.0832 0.8813 20 1 -0.4352 -13.2649 0.9997 21 1 1.5255 -13.7951 -0.3257 22 1 1.7000 -13.6370 2.0875 23 6 0.2807 -5.8689 2.1566 24 6 0.5680 -4.5226 2.0455 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1391 33 1 3.1300 -0.7210 -1.2494 34 1 2.5699 -2.2191 3.1166 35 1 3.6227 -4.5109 3.4990 36 1 3.1047 -6.9098 3.6833 37 1 1.3639 -8.6003 3.7522 38 1 -0.2037 -8.3270 2.9546 39 1 0.8904 -8.5203 0.7378 40 1 2.4581 -8.7937 1.5355 41 1 2.3025 -11.4187 -1.0423 42 1 -0.6564 -6.2532 1.7813 43 1 -0.1433 -3.8543 1.5831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144126762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:22 Heat of formation + Delta-G solvation = -71.851345 kcal Electronic energy + Delta-G solvation = -22660.981420 eV Core-core repulsion = 19284.709752 eV Total energy + Delta-G solvation = -3376.271669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14602 -39.27719 -37.33626 -35.20718 -34.28987 -33.35996 -31.49195 -30.58858 -28.29299 -27.68364 -27.59945 -25.08189 -23.19790 -22.54156 -21.48941 -20.19491 -19.99981 -18.39801 -17.44394 -16.43737 -16.38731 -16.23729 -15.03616 -14.89587 -14.73867 -14.45260 -14.31499 -13.85538 -13.37927 -13.19384 -12.94800 -12.76216 -12.53639 -12.40083 -12.25045 -12.15711 -12.09148 -11.76485 -11.63486 -11.42764 -11.11233 -10.90449 -10.75558 -10.62345 -10.56127 -10.24402 -9.91383 -9.74124 -9.44461 -9.07382 -8.56647 -8.31437 -7.68408 -5.96527 -3.99853 1.56011 1.77910 2.00401 2.75253 3.35273 3.39702 3.41970 3.93695 4.16866 4.44906 4.48648 4.49545 4.63986 5.14004 5.19275 5.27459 5.28583 5.34950 5.38687 5.42734 5.50226 5.58518 5.61965 5.68773 5.71905 5.80292 5.85387 6.06363 6.13936 6.21511 6.29420 6.49880 6.53901 6.59508 6.70283 6.82747 7.04629 7.17292 7.30609 7.40290 7.71386 7.86051 8.03637 8.23084 8.43658 9.07205 9.63930 11.14416 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028208 B = 0.002739 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.385359 B =10219.721624 C =10697.580511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.186 4.186 5 O -0.365 6.365 6 C 0.649 3.351 7 O -0.547 6.547 8 N -0.649 5.649 9 C 0.127 3.873 10 C -0.137 4.137 11 C -0.104 4.104 12 C -0.063 4.063 13 C -0.080 4.080 14 C 0.030 3.970 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.104 4.104 24 C -0.114 4.114 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.412 0.588 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.017 0.983 41 H 0.261 0.739 42 H 0.125 0.875 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 24.535 4.207 24.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.243 4.243 5 O -0.280 6.280 6 C 0.403 3.597 7 O -0.435 6.435 8 N -0.300 5.300 9 C 0.035 3.965 10 C -0.157 4.157 11 C -0.122 4.122 12 C -0.064 4.064 13 C -0.117 4.117 14 C -0.007 4.007 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.123 4.123 24 C -0.134 4.134 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.248 0.752 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.071 0.929 42 H 0.143 0.857 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.027 24.348 3.532 24.603 hybrid contribution 0.166 -0.746 0.152 0.779 sum 0.193 23.603 3.684 23.889 Atomic orbital electron populations 1.22526 0.93876 1.05265 1.02492 1.22102 0.94453 0.91433 0.82026 1.21861 1.02277 0.92477 1.03110 1.22536 1.01655 1.03765 0.96323 1.86287 1.71501 1.23469 1.46741 1.18051 0.79189 0.80568 0.81936 1.90930 1.39646 1.69748 1.43128 1.41950 1.58543 1.08302 1.21243 1.17360 0.94911 0.80602 1.03645 1.20753 0.98025 0.93265 1.03694 1.20869 0.96970 0.93942 1.00429 1.20428 0.93543 0.97297 0.95087 1.20839 1.00859 0.88468 1.01554 1.19075 0.96536 0.93991 0.91141 1.21225 1.37870 0.92801 1.04211 0.92643 1.25031 0.95231 0.98807 0.95372 1.69966 1.40183 1.35097 1.08077 0.86658 0.78718 0.85240 0.77369 1.20232 1.21324 1.20248 1.21008 1.00055 0.92302 0.98913 1.21189 0.95423 0.96243 1.00547 0.92189 0.91029 0.89224 0.91451 0.90067 0.91503 0.89108 0.91046 0.92111 0.75239 0.86155 0.85572 0.92192 0.92182 0.96393 0.96441 0.92936 0.85717 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 8.37 37.16 0.31 -1.42 16 2 C 0.14 1.32 1.13 -90.63 -0.10 1.21 16 3 C -0.14 -0.93 8.85 37.15 0.33 -0.61 16 4 C -0.19 -1.88 8.37 37.16 0.31 -1.57 16 5 O -0.36 -4.19 9.94 -40.37 -0.40 -4.59 16 6 C 0.65 8.72 7.90 54.05 0.43 9.15 16 7 O -0.55 -8.68 9.31 -19.27 -0.18 -8.86 16 8 N -0.65 -7.91 5.34 -14.27 -0.08 -7.99 16 9 C 0.13 1.87 6.30 -83.68 -0.53 1.34 16 10 C -0.14 -1.95 9.97 -39.39 -0.39 -2.34 16 11 C -0.10 -1.69 9.69 -39.61 -0.38 -2.08 16 12 C -0.06 -1.16 5.14 -104.59 -0.54 -1.70 16 13 C -0.08 -1.66 5.28 -27.88 -0.15 -1.81 16 14 C 0.03 0.78 4.95 -27.88 -0.14 0.64 16 15 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 19 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C -0.10 -1.82 9.69 -39.61 -0.38 -2.21 16 24 C -0.11 -1.87 8.70 -39.39 -0.34 -2.21 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 1.19 5.88 -51.93 -0.31 0.88 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.41 3.66 8.93 -40.82 -0.36 3.30 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 37 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 38 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.12 2.09 8.06 -52.48 -0.42 1.67 16 43 H 0.13 2.19 6.22 -52.49 -0.33 1.86 16 LS Contribution 354.24 15.07 5.34 5.34 Total: -1.00 -32.39 354.24 -8.35 -40.74 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.76 Total: 2.41 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -1.99 Total: -17.25 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.66 Total: -34.59 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.58 Total: -13.44 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.39 -8.35 -40.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144126762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.110 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds