Wall clock time and date at job start Tue Mar 31 2020 07:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47269 * 2 1 4 4 C 1.52995 * 109.47265 * 239.99315 * 2 1 3 5 5 O 1.45202 * 109.47124 * 119.99532 * 2 1 3 6 6 C 1.34658 * 116.99798 * 60.00125 * 5 2 1 7 7 O 1.21505 * 120.00005 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99866 * 180.02562 * 6 5 2 9 9 C 1.39954 * 119.99961 * 184.61998 * 8 6 5 10 10 C 1.38861 * 120.06968 * 144.90704 * 9 8 6 11 11 C 1.38122 * 119.92666 * 180.27430 * 10 9 8 12 12 C 1.38275 * 120.07058 * 359.49882 * 11 10 9 13 13 C 1.50704 * 119.93239 * 180.23222 * 12 11 10 14 14 C 1.53000 * 109.46797 * 270.27172 * 13 12 11 15 15 C 1.50699 * 109.46793 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00230 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99923 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00019 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99964 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47380 * 59.99879 * 19 17 15 21 21 H 1.48504 * 109.47306 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47271 * 299.99623 * 19 17 15 23 23 C 1.38279 * 120.13876 * 0.50095 * 12 11 10 24 24 C 1.38110 * 120.07361 * 359.75547 * 23 12 11 25 25 H 1.08999 * 109.46990 * 300.00675 * 1 2 3 26 26 H 1.08997 * 109.46791 * 60.00403 * 1 2 3 27 27 H 1.08997 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47480 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47186 * 299.99726 * 3 2 1 30 30 H 1.08999 * 109.47665 * 59.99738 * 3 2 1 31 31 H 1.08997 * 109.47810 * 300.00253 * 4 2 1 32 32 H 1.09005 * 109.46684 * 60.00585 * 4 2 1 33 33 H 1.09000 * 109.47405 * 179.97438 * 4 2 1 34 34 H 0.97001 * 120.00360 * 4.61615 * 8 6 5 35 35 H 1.07993 * 120.03707 * 0.02562 * 10 9 8 36 36 H 1.08000 * 119.96032 * 179.74305 * 11 10 9 37 37 H 1.08999 * 109.46393 * 30.26891 * 13 12 11 38 38 H 1.08993 * 109.46958 * 150.27016 * 13 12 11 39 39 H 1.09000 * 109.47130 * 299.99813 * 14 13 12 40 40 H 1.09001 * 109.47235 * 60.00194 * 14 13 12 41 41 H 0.96993 * 119.99885 * 180.02562 * 18 17 15 42 42 H 1.08008 * 119.96816 * 179.76985 * 23 12 11 43 43 H 1.07997 * 120.04347 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9724 1.3385 7 8 0.9508 -2.5095 0.5042 8 7 2.0671 -2.6654 2.4173 9 6 1.7727 -4.0291 2.5288 10 6 2.6850 -4.8916 3.1222 11 6 2.3938 -6.2378 3.2255 12 6 1.1911 -6.7252 2.7481 13 6 0.8745 -8.1938 2.8672 14 6 1.3798 -8.9269 1.6229 15 6 1.0637 -10.3955 1.7422 16 1 0.5531 -10.7687 2.6178 17 6 1.4264 -11.2629 0.7337 18 7 2.0477 -10.8085 -0.3327 19 14 1.0339 -13.0832 0.8813 20 1 -0.4352 -13.2649 0.9997 21 1 1.5255 -13.7951 -0.3257 22 1 1.7000 -13.6370 2.0875 23 6 0.2807 -5.8689 2.1566 24 6 0.5680 -4.5226 2.0455 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1391 33 1 3.1300 -0.7210 -1.2494 34 1 2.5699 -2.2191 3.1166 35 1 3.6227 -4.5109 3.4990 36 1 3.1047 -6.9098 3.6833 37 1 1.3639 -8.6003 3.7522 38 1 -0.2037 -8.3270 2.9546 39 1 0.8904 -8.5203 0.7378 40 1 2.4581 -8.7937 1.5355 41 1 2.3025 -11.4187 -1.0423 42 1 -0.6564 -6.2532 1.7813 43 1 -0.1433 -3.8543 1.5831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144126762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:22 Heat of formation + Delta-G solvation = -90.678484 kcal Electronic energy + Delta-G solvation = -22661.797826 eV Core-core repulsion = 19284.709752 eV Total energy + Delta-G solvation = -3377.088075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.16639 -40.45064 -38.40801 -36.49373 -35.53906 -34.86938 -33.25038 -31.86368 -29.94566 -28.37610 -28.29325 -26.85472 -24.54682 -23.81112 -22.99850 -21.55648 -21.12046 -19.37949 -18.59319 -18.50454 -17.39057 -17.24137 -16.52972 -16.28437 -16.14269 -15.67519 -15.30977 -14.89805 -14.59588 -14.54055 -14.41332 -14.15545 -13.90398 -13.47003 -13.32830 -13.17101 -12.94402 -12.88193 -12.83790 -12.75762 -12.53319 -12.45856 -12.22123 -12.17738 -11.71789 -11.63097 -11.42883 -11.27746 -11.06529 -10.96546 -10.54450 -9.83519 -8.99510 -8.18219 -6.30792 0.29283 0.49823 1.02238 1.40719 1.44308 1.52127 1.67500 2.41940 2.86996 3.03421 3.14200 3.73129 3.78349 3.93185 3.95073 4.06986 4.17220 4.37818 4.48370 4.54260 4.58444 4.61256 4.76077 4.76346 4.78449 4.84612 4.88476 4.89984 5.07766 5.15365 5.15987 5.27998 5.30286 5.30998 5.37532 5.41890 5.51017 5.58472 5.61017 5.85804 5.92679 6.09165 6.24269 6.29473 6.86602 7.22822 7.38622 8.93073 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028208 B = 0.002739 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.385359 B =10219.721624 C =10697.580511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.126 3.874 3 C -0.134 4.134 4 C -0.184 4.184 5 O -0.360 6.360 6 C 0.646 3.354 7 O -0.574 6.574 8 N -0.638 5.638 9 C 0.135 3.865 10 C -0.126 4.126 11 C -0.108 4.108 12 C -0.089 4.089 13 C -0.065 4.065 14 C 0.036 3.964 15 C -0.544 4.544 16 H 0.065 0.935 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.264 1.264 23 C -0.115 4.115 24 C -0.124 4.124 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.430 0.570 35 H 0.160 0.840 36 H 0.138 0.862 37 H 0.070 0.930 38 H 0.061 0.939 39 H -0.016 1.016 40 H -0.009 1.009 41 H 0.263 0.737 42 H 0.120 0.880 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.934 25.882 5.293 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.090 3.910 3 C -0.191 4.191 4 C -0.241 4.241 5 O -0.274 6.274 6 C 0.400 3.600 7 O -0.464 6.464 8 N -0.291 5.291 9 C 0.042 3.958 10 C -0.146 4.146 11 C -0.126 4.126 12 C -0.090 4.090 13 C -0.102 4.102 14 C -0.001 4.001 15 C -0.581 4.581 16 H 0.083 0.917 17 C -0.200 4.200 18 N -0.576 5.576 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.188 1.188 23 C -0.134 4.134 24 C -0.144 4.144 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.269 0.731 35 H 0.177 0.823 36 H 0.156 0.844 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.003 0.997 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.138 0.862 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.683 25.734 4.652 26.160 hybrid contribution -0.023 -1.024 -0.238 1.051 sum 0.660 24.710 4.414 25.110 Atomic orbital electron populations 1.22489 0.93851 1.03655 1.03870 1.22473 0.94701 0.92796 0.81062 1.21886 1.02529 0.90124 1.04559 1.22505 1.01721 1.02104 0.97746 1.86314 1.71286 1.22205 1.47638 1.18224 0.78808 0.81164 0.81777 1.90940 1.40782 1.70479 1.44153 1.41814 1.58346 1.07347 1.21579 1.17443 0.94195 0.81874 1.02286 1.21052 0.99043 0.92110 1.02358 1.21075 0.96212 0.95282 1.00045 1.20271 0.95192 0.95944 0.97573 1.20557 1.00763 0.89858 0.99041 1.18919 0.94586 0.94045 0.92541 1.21703 1.37784 0.94041 1.04616 0.91702 1.26034 0.94877 1.04255 0.94860 1.70119 1.41403 1.37017 1.09024 0.85472 0.78975 0.78683 0.77747 1.19136 1.21015 1.18846 1.21031 1.00114 0.92974 0.99290 1.21201 0.96414 0.95664 1.01130 0.91459 0.89023 0.92239 0.91072 0.87921 0.90754 0.92490 0.88960 0.91906 0.73069 0.82253 0.84421 0.91171 0.92001 0.99749 0.99037 0.92820 0.86156 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 8.37 71.98 0.60 -2.62 16 2 C 0.13 2.23 1.13 -10.80 -0.01 2.22 16 3 C -0.13 -1.41 8.85 71.98 0.64 -0.77 16 4 C -0.18 -3.57 8.37 71.98 0.60 -2.97 16 5 O -0.36 -7.75 9.94 -55.67 -0.55 -8.30 16 6 C 0.65 16.93 7.90 129.79 1.03 17.95 16 7 O -0.57 -18.58 9.31 19.82 0.18 -18.39 16 8 N -0.64 -14.51 5.34 -429.45 -2.29 -16.80 16 9 C 0.13 3.82 6.30 38.14 0.24 4.06 16 10 C -0.13 -3.31 9.97 22.39 0.22 -3.09 16 11 C -0.11 -3.43 9.69 22.25 0.22 -3.21 16 12 C -0.09 -3.34 5.14 -19.84 -0.10 -3.44 16 13 C -0.06 -2.76 5.28 29.85 0.16 -2.60 16 14 C 0.04 1.98 4.95 29.85 0.15 2.13 16 15 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 16 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 17 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 18 N -0.94 -58.63 13.29 21.45 0.28 -58.35 16 19 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 23 C -0.12 -4.19 9.69 22.25 0.22 -3.97 16 24 C -0.12 -4.11 8.70 22.39 0.19 -3.92 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.45 5.88 -2.39 -0.01 1.44 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 1.53 5.88 -2.39 -0.01 1.51 16 32 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.43 6.52 8.93 -92.71 -0.83 5.69 16 35 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 36 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 37 H 0.07 2.78 8.09 -2.39 -0.02 2.77 16 38 H 0.06 2.55 8.08 -2.39 -0.02 2.53 16 39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 43 H 0.13 4.40 6.22 -2.91 -0.02 4.38 16 Total: -1.00 -72.15 354.24 4.66 -67.49 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.17 Total: 18.62 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 4.84 Total: -31.19 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -2.01 Total: -75.15 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.37 Total: -26.70 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -72.15 4.66 -67.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144126762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.188 kcal (2) G-P(sol) polarization free energy of solvation -72.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds