Wall clock time and date at job start Tue Mar 31 2020 07:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 120.00348 * 2 1 4 4 H 1.08006 * 120.00219 * 154.60743 * 3 2 1 5 5 C 1.38815 * 120.00095 * 334.60857 * 3 2 1 6 6 N 1.31622 * 119.99508 * 3.91403 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 183.91118 * 5 3 2 8 8 H 1.48505 * 109.46927 * 60.00157 * 7 5 3 9 9 H 1.48497 * 109.47163 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47291 * 300.00203 * 7 5 3 11 11 C 1.46501 * 119.99761 * 180.02562 * 2 1 3 12 12 C 1.50699 * 109.47517 * 89.99450 * 11 2 1 13 13 C 1.38357 * 119.84985 * 269.72932 * 12 11 2 14 14 C 1.37952 * 120.14970 * 179.72060 * 13 12 11 15 15 C 1.39627 * 119.84492 * 0.57398 * 14 13 12 16 16 C 1.47730 * 120.14705 * 179.68145 * 15 14 13 17 17 O 1.21469 * 119.99561 * 180.02562 * 16 15 14 18 18 O 1.34710 * 120.00039 * 0.02562 * 16 15 14 19 19 C 1.45195 * 116.99938 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47546 * 59.99270 * 19 18 16 21 21 C 1.53005 * 109.47220 * 179.97438 * 19 18 16 22 22 C 1.53005 * 109.46822 * 299.99401 * 19 18 16 23 23 C 1.39626 * 119.69944 * 359.69770 * 15 14 13 24 24 C 1.37940 * 119.85130 * 0.02562 * 23 15 14 25 25 H 1.08992 * 109.47077 * 84.45946 * 1 2 3 26 26 H 1.09001 * 109.47154 * 204.46610 * 1 2 3 27 27 H 1.09005 * 109.46425 * 324.46198 * 1 2 3 28 28 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 29 29 H 1.09003 * 109.46799 * 210.00106 * 11 2 1 30 30 H 1.09000 * 109.47139 * 329.99512 * 11 2 1 31 31 H 1.07998 * 119.92838 * 359.97438 * 13 12 11 32 32 H 1.08007 * 120.07458 * 180.26987 * 14 13 12 33 33 H 1.09000 * 109.46796 * 60.00200 * 20 19 18 34 34 H 1.09002 * 109.47202 * 179.97438 * 20 19 18 35 35 H 1.08997 * 109.47188 * 300.00529 * 20 19 18 36 36 H 1.09000 * 109.47341 * 59.99692 * 21 19 18 37 37 H 1.09000 * 109.46941 * 179.97438 * 21 19 18 38 38 H 1.09000 * 109.46902 * 299.99664 * 21 19 18 39 39 H 1.09004 * 109.46818 * 60.00433 * 22 19 18 40 40 H 1.09004 * 109.46738 * 179.97438 * 22 19 18 41 41 H 1.08991 * 109.47504 * 300.00239 * 22 19 18 42 42 H 1.08004 * 120.07049 * 179.97438 * 23 15 14 43 43 H 1.08000 * 119.92415 * 179.97438 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1516 1.2310 0.4011 5 6 1.5564 2.3300 -0.5155 6 7 0.3088 2.2930 -0.9334 7 14 2.5283 3.9220 -0.6160 8 1 3.7228 3.7193 -1.4748 9 1 1.6744 4.9873 -1.2000 10 1 2.9608 4.3248 0.7463 11 6 2.1975 -1.2688 -0.0006 12 6 2.4485 -1.7033 -1.4215 13 6 1.5267 -2.5065 -2.0691 14 6 1.7475 -2.9032 -3.3718 15 6 2.9103 -2.5022 -4.0327 16 6 3.1569 -2.9289 -5.4253 17 8 4.1696 -2.5788 -5.9975 18 8 2.2587 -3.7063 -6.0606 19 6 2.5668 -4.0876 -7.4273 20 6 3.8807 -4.8711 -7.4544 21 6 1.4399 -4.9633 -7.9789 22 6 2.7047 -2.8306 -8.2887 23 6 3.8390 -1.6963 -3.3712 24 6 3.6029 -1.3022 -2.0705 25 1 -0.3633 0.0992 -1.0228 26 1 -0.3633 -0.9354 0.4256 27 1 -0.3632 0.8363 0.5974 28 1 -0.1057 3.0925 -1.2939 29 1 3.1499 -1.1386 0.5134 30 1 1.6084 -2.0286 0.5130 31 1 0.6302 -2.8202 -1.5551 32 1 1.0250 -3.5266 -3.8776 33 1 3.7824 -5.7666 -6.8407 34 1 4.1117 -5.1578 -8.4803 35 1 4.6837 -4.2476 -7.0613 36 1 0.5036 -4.4055 -7.9596 37 1 1.6710 -5.2492 -9.0050 38 1 1.3420 -5.8587 -7.3652 39 1 3.5078 -2.2072 -7.8956 40 1 2.9365 -3.1169 -9.3146 41 1 1.7688 -2.2724 -8.2695 42 1 4.7406 -1.3829 -3.8765 43 1 4.3207 -0.6792 -1.5576 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158171453.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:43 Heat of formation + Delta-G solvation = -42.502079 kcal Electronic energy + Delta-G solvation = -23281.999293 eV Core-core repulsion = 19907.000304 eV Total energy + Delta-G solvation = -3374.998989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.69406 -38.71279 -36.79302 -35.48474 -34.08615 -32.11007 -30.53184 -30.25625 -27.54810 -27.50575 -26.56089 -25.86575 -23.46650 -22.26246 -21.38338 -20.42098 -19.46221 -17.53959 -16.79315 -16.61141 -15.84267 -15.38248 -14.95416 -14.65413 -14.46637 -14.37427 -13.67736 -13.63649 -13.43877 -13.15150 -12.97340 -12.60375 -12.42929 -12.26103 -12.01909 -12.01253 -11.97093 -11.47711 -11.31444 -11.30618 -10.97769 -10.88394 -10.73057 -10.59698 -10.40555 -10.25964 -10.11702 -9.97299 -9.84982 -8.60294 -8.49392 -8.31484 -6.86167 -5.84224 -3.27572 1.13341 1.89324 2.76023 2.88641 3.34873 3.40405 3.40812 4.23865 4.45236 4.58480 4.64094 4.76295 4.82802 5.25155 5.32033 5.33309 5.38705 5.38878 5.53722 5.56141 5.61870 5.65670 5.68884 5.71196 5.83311 5.89508 5.93458 6.13277 6.18173 6.18491 6.30118 6.49783 6.54687 6.56838 6.71531 6.72957 6.88185 7.22323 7.38836 7.41237 7.68480 7.77584 8.01862 8.31354 9.14475 9.74061 10.23637 11.19452 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021044 B = 0.003704 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.217370 B = 7556.839348 C = 7942.118228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.589 5.589 3 C -0.257 4.257 4 H 0.071 0.929 5 C 0.010 3.990 6 N -0.901 5.901 7 Si 0.904 3.096 8 H -0.281 1.281 9 H -0.289 1.289 10 H -0.282 1.282 11 C 0.173 3.827 12 C -0.040 4.040 13 C -0.132 4.132 14 C -0.064 4.064 15 C -0.158 4.158 16 C 0.518 3.482 17 O -0.514 6.514 18 O -0.348 6.348 19 C 0.117 3.883 20 C -0.182 4.182 21 C -0.140 4.140 22 C -0.184 4.184 23 C -0.054 4.054 24 C -0.118 4.118 25 H 0.026 0.974 26 H -0.006 1.006 27 H 0.056 0.944 28 H 0.255 0.745 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.127 0.873 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.813 -14.142 -9.641 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.310 5.310 3 C -0.387 4.387 4 H 0.089 0.911 5 C -0.189 4.189 6 N -0.544 5.544 7 Si 0.733 3.267 8 H -0.207 1.207 9 H -0.215 1.215 10 H -0.208 1.208 11 C 0.046 3.954 12 C -0.045 4.045 13 C -0.151 4.151 14 C -0.082 4.082 15 C -0.160 4.160 16 C 0.365 3.635 17 O -0.405 6.405 18 O -0.266 6.266 19 C 0.080 3.920 20 C -0.239 4.239 21 C -0.197 4.197 22 C -0.241 4.241 23 C -0.073 4.073 24 C -0.137 4.137 25 H 0.045 0.955 26 H 0.013 0.987 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.145 0.855 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.929 -13.864 -9.854 17.259 hybrid contribution 0.428 1.067 -0.570 1.283 sum 3.356 -12.797 -10.425 16.843 Atomic orbital electron populations 1.20943 0.81813 0.95672 0.99572 1.44134 1.02200 1.00201 1.84433 1.19214 0.99799 0.85857 1.33809 0.91077 1.25225 0.96523 0.99020 0.98183 1.70077 1.11248 1.28342 1.44750 0.86343 0.79485 0.82844 0.77999 1.20717 1.21484 1.20805 1.20128 0.96987 0.88886 0.89366 1.21528 0.91753 0.90108 1.01077 1.20949 0.99763 0.99790 0.94598 1.21277 0.95196 0.97379 0.94387 1.18897 0.99216 1.06924 0.90989 1.21256 0.80464 0.74781 0.87000 1.90688 1.28072 1.54353 1.67388 1.86607 1.48459 1.63143 1.28353 1.22126 0.96011 0.95072 0.78743 1.22488 0.97835 1.00736 1.02883 1.21841 0.97611 0.99457 1.00793 1.22498 1.03911 0.97839 0.99846 1.21139 0.97764 0.94167 0.94223 1.20952 0.98290 1.00308 0.94160 0.95529 0.98709 0.92532 0.93426 0.92470 0.93023 0.86049 0.85589 0.92075 0.91289 0.89700 0.91426 0.90528 0.91503 0.89675 0.91284 0.91939 0.85538 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 8.99 59.85 0.54 4.49 16 2 N -0.59 -14.30 2.91 -182.50 -0.53 -14.84 16 3 C -0.26 -6.83 9.67 -15.06 -0.15 -6.97 16 4 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 5 C 0.01 0.27 5.38 -17.43 -0.09 0.17 16 6 N -0.90 -25.68 10.13 55.49 0.56 -25.12 16 7 Si 0.90 21.48 29.56 -169.99 -5.02 16.45 16 8 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.17 3.40 5.83 -5.19 -0.03 3.37 16 12 C -0.04 -0.75 5.47 -104.53 -0.57 -1.33 16 13 C -0.13 -2.28 9.68 -39.64 -0.38 -2.66 16 14 C -0.06 -1.05 9.62 -39.17 -0.38 -1.42 16 15 C -0.16 -2.73 5.87 -104.98 -0.62 -3.35 16 16 C 0.52 8.55 7.21 34.61 0.25 8.80 16 17 O -0.51 -9.01 11.89 -19.24 -0.23 -9.23 16 18 O -0.35 -5.07 9.14 -40.52 -0.37 -5.44 16 19 C 0.12 1.37 1.13 -90.62 -0.10 1.27 16 20 C -0.18 -1.99 8.37 37.16 0.31 -1.68 16 21 C -0.14 -1.23 8.85 37.16 0.33 -0.90 16 22 C -0.18 -2.15 8.37 37.16 0.31 -1.83 16 23 C -0.05 -0.96 9.60 -39.17 -0.38 -1.34 16 24 C -0.12 -2.18 9.68 -39.64 -0.38 -2.56 16 25 H 0.03 0.69 7.43 -51.93 -0.39 0.31 16 26 H -0.01 -0.12 7.83 -51.93 -0.41 -0.52 16 27 H 0.06 1.47 7.04 -51.93 -0.37 1.11 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.06 1.07 7.98 -51.93 -0.41 0.65 16 30 H 0.05 0.90 7.80 -51.93 -0.40 0.50 16 31 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 32 H 0.13 1.79 7.61 -52.48 -0.40 1.39 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.12 5.88 -51.93 -0.31 0.81 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.19 5.88 -51.93 -0.31 0.89 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.13 2.10 7.65 -52.48 -0.40 1.70 16 43 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -29.77 353.01 -8.35 -38.13 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.74 Total: 0.69 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.34 Total: -5.96 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.03 Total: -39.96 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.60 Total: -14.68 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.77 -8.35 -38.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158171453.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.373 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds