Wall clock time and date at job start Tue Mar 31 2020 07:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 120.00348 * 2 1 4 4 H 1.08006 * 120.00219 * 154.60743 * 3 2 1 5 5 C 1.38815 * 120.00095 * 334.60857 * 3 2 1 6 6 N 1.31622 * 119.99508 * 3.91403 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 183.91118 * 5 3 2 8 8 H 1.48505 * 109.46927 * 60.00157 * 7 5 3 9 9 H 1.48497 * 109.47163 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47291 * 300.00203 * 7 5 3 11 11 C 1.46501 * 119.99761 * 180.02562 * 2 1 3 12 12 C 1.50699 * 109.47517 * 89.99450 * 11 2 1 13 13 C 1.38357 * 119.84985 * 269.72932 * 12 11 2 14 14 C 1.37952 * 120.14970 * 179.72060 * 13 12 11 15 15 C 1.39627 * 119.84492 * 0.57398 * 14 13 12 16 16 C 1.47730 * 120.14705 * 179.68145 * 15 14 13 17 17 O 1.21469 * 119.99561 * 180.02562 * 16 15 14 18 18 O 1.34710 * 120.00039 * 0.02562 * 16 15 14 19 19 C 1.45195 * 116.99938 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47546 * 59.99270 * 19 18 16 21 21 C 1.53005 * 109.47220 * 179.97438 * 19 18 16 22 22 C 1.53005 * 109.46822 * 299.99401 * 19 18 16 23 23 C 1.39626 * 119.69944 * 359.69770 * 15 14 13 24 24 C 1.37940 * 119.85130 * 0.02562 * 23 15 14 25 25 H 1.08992 * 109.47077 * 84.45946 * 1 2 3 26 26 H 1.09001 * 109.47154 * 204.46610 * 1 2 3 27 27 H 1.09005 * 109.46425 * 324.46198 * 1 2 3 28 28 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 29 29 H 1.09003 * 109.46799 * 210.00106 * 11 2 1 30 30 H 1.09000 * 109.47139 * 329.99512 * 11 2 1 31 31 H 1.07998 * 119.92838 * 359.97438 * 13 12 11 32 32 H 1.08007 * 120.07458 * 180.26987 * 14 13 12 33 33 H 1.09000 * 109.46796 * 60.00200 * 20 19 18 34 34 H 1.09002 * 109.47202 * 179.97438 * 20 19 18 35 35 H 1.08997 * 109.47188 * 300.00529 * 20 19 18 36 36 H 1.09000 * 109.47341 * 59.99692 * 21 19 18 37 37 H 1.09000 * 109.46941 * 179.97438 * 21 19 18 38 38 H 1.09000 * 109.46902 * 299.99664 * 21 19 18 39 39 H 1.09004 * 109.46818 * 60.00433 * 22 19 18 40 40 H 1.09004 * 109.46738 * 179.97438 * 22 19 18 41 41 H 1.08991 * 109.47504 * 300.00239 * 22 19 18 42 42 H 1.08004 * 120.07049 * 179.97438 * 23 15 14 43 43 H 1.08000 * 119.92415 * 179.97438 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1516 1.2310 0.4011 5 6 1.5564 2.3300 -0.5155 6 7 0.3088 2.2930 -0.9334 7 14 2.5283 3.9220 -0.6160 8 1 3.7228 3.7193 -1.4748 9 1 1.6744 4.9873 -1.2000 10 1 2.9608 4.3248 0.7463 11 6 2.1975 -1.2688 -0.0006 12 6 2.4485 -1.7033 -1.4215 13 6 1.5267 -2.5065 -2.0691 14 6 1.7475 -2.9032 -3.3718 15 6 2.9103 -2.5022 -4.0327 16 6 3.1569 -2.9289 -5.4253 17 8 4.1696 -2.5788 -5.9975 18 8 2.2587 -3.7063 -6.0606 19 6 2.5668 -4.0876 -7.4273 20 6 3.8807 -4.8711 -7.4544 21 6 1.4399 -4.9633 -7.9789 22 6 2.7047 -2.8306 -8.2887 23 6 3.8390 -1.6963 -3.3712 24 6 3.6029 -1.3022 -2.0705 25 1 -0.3633 0.0992 -1.0228 26 1 -0.3633 -0.9354 0.4256 27 1 -0.3632 0.8363 0.5974 28 1 -0.1057 3.0925 -1.2939 29 1 3.1499 -1.1386 0.5134 30 1 1.6084 -2.0286 0.5130 31 1 0.6302 -2.8202 -1.5551 32 1 1.0250 -3.5266 -3.8776 33 1 3.7824 -5.7666 -6.8407 34 1 4.1117 -5.1578 -8.4803 35 1 4.6837 -4.2476 -7.0613 36 1 0.5036 -4.4055 -7.9596 37 1 1.6710 -5.2492 -9.0050 38 1 1.3420 -5.8587 -7.3652 39 1 3.5078 -2.2072 -7.8956 40 1 2.9365 -3.1169 -9.3146 41 1 1.7688 -2.2724 -8.2695 42 1 4.7406 -1.3829 -3.8765 43 1 4.3207 -0.6792 -1.5576 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158171453.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:42 Heat of formation + Delta-G solvation = -56.465570 kcal Electronic energy + Delta-G solvation = -23282.604795 eV Core-core repulsion = 19907.000304 eV Total energy + Delta-G solvation = -3375.604491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.89190 -40.08430 -38.01868 -37.22521 -35.11548 -33.83098 -31.98927 -31.86637 -28.39348 -28.30166 -28.19724 -27.75774 -24.91236 -23.69397 -22.89984 -21.85841 -20.62819 -18.89478 -18.64277 -17.70474 -17.03666 -17.00441 -16.38028 -16.14508 -15.81220 -15.46774 -15.32354 -14.95903 -14.82892 -14.55046 -14.36376 -13.96679 -13.57060 -13.36322 -13.14466 -13.05046 -12.95012 -12.87406 -12.79875 -12.60183 -12.57924 -12.46927 -12.20594 -12.16146 -12.03929 -11.94236 -11.70531 -11.41395 -11.06158 -10.60936 -9.88155 -9.75965 -8.79089 -7.85307 -5.31927 -0.23475 0.50397 1.45194 1.48123 1.53054 1.56079 1.64093 2.49090 2.86091 3.33315 3.60281 3.74875 3.78498 3.87682 3.91654 3.94692 4.06098 4.15827 4.39648 4.52298 4.57219 4.59052 4.74471 4.74781 4.79458 4.83518 4.86694 4.88460 4.95050 5.02853 5.10542 5.14703 5.24733 5.28462 5.32623 5.38563 5.44228 5.53558 5.64553 5.77940 5.80894 5.99490 6.33862 6.77398 7.16083 7.85177 8.28760 9.17389 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021044 B = 0.003704 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.217370 B = 7556.839348 C = 7942.118228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.608 5.608 3 C -0.261 4.261 4 H 0.076 0.924 5 C -0.045 4.045 6 N -0.934 5.934 7 Si 0.960 3.040 8 H -0.280 1.280 9 H -0.297 1.297 10 H -0.273 1.273 11 C 0.174 3.826 12 C -0.055 4.055 13 C -0.132 4.132 14 C -0.059 4.059 15 C -0.163 4.163 16 C 0.519 3.481 17 O -0.528 6.528 18 O -0.350 6.350 19 C 0.104 3.896 20 C -0.179 4.179 21 C -0.135 4.135 22 C -0.183 4.183 23 C -0.064 4.064 24 C -0.127 4.127 25 H -0.002 1.002 26 H 0.030 0.970 27 H 0.026 0.974 28 H 0.247 0.753 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.132 0.868 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.967 -16.142 -10.733 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.330 5.330 3 C -0.391 4.391 4 H 0.093 0.907 5 C -0.240 4.240 6 N -0.580 5.580 7 Si 0.789 3.211 8 H -0.206 1.206 9 H -0.223 1.223 10 H -0.199 1.199 11 C 0.048 3.952 12 C -0.058 4.058 13 C -0.151 4.151 14 C -0.077 4.077 15 C -0.164 4.164 16 C 0.366 3.634 17 O -0.419 6.419 18 O -0.267 6.267 19 C 0.068 3.932 20 C -0.236 4.236 21 C -0.192 4.192 22 C -0.240 4.240 23 C -0.082 4.082 24 C -0.146 4.146 25 H 0.016 0.984 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.078 0.922 42 H 0.149 0.851 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.115 -15.913 -10.951 19.567 hybrid contribution 0.450 1.472 -0.318 1.572 sum 3.565 -14.441 -11.269 18.661 Atomic orbital electron populations 1.20637 0.82233 0.96135 0.97501 1.44218 1.02279 1.01145 1.85351 1.19516 0.99688 0.87075 1.32833 0.90676 1.25863 0.97340 1.01848 0.98974 1.70253 1.12526 1.28374 1.46867 0.85447 0.78005 0.79579 0.78117 1.20565 1.22302 1.19871 1.20218 0.97248 0.87547 0.90148 1.21489 0.92570 0.91437 1.00332 1.21201 0.99812 0.99084 0.94963 1.21533 0.95132 0.96961 0.94107 1.19169 0.99318 1.06303 0.91647 1.21141 0.80546 0.74939 0.86796 1.90695 1.28716 1.54861 1.67674 1.86590 1.47797 1.62346 1.29989 1.22575 0.97759 0.95631 0.77213 1.22457 0.96463 1.00200 1.04490 1.21876 0.96263 0.98887 1.02156 1.22486 1.02677 0.97516 1.01291 1.21240 0.98312 0.94475 0.94168 1.21063 0.98573 1.00391 0.94582 0.98382 0.95157 0.95552 0.94379 0.91799 0.90500 0.84183 0.83144 0.91523 0.88716 0.92338 0.91469 0.87915 0.90900 0.92452 0.88583 0.92208 0.85057 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.64 8.99 127.77 1.15 9.79 16 2 N -0.61 -29.25 2.91 -731.29 -2.13 -31.38 16 3 C -0.26 -13.88 9.67 84.03 0.81 -13.07 16 4 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 5 C -0.04 -2.48 5.38 84.86 0.46 -2.03 16 6 N -0.93 -54.68 10.13 21.65 0.22 -54.46 16 7 Si 0.96 44.81 29.56 68.60 2.03 46.84 16 8 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 9 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 C 0.17 6.57 5.83 85.63 0.50 7.06 16 12 C -0.05 -1.99 5.47 -19.80 -0.11 -2.10 16 13 C -0.13 -4.29 9.68 22.23 0.22 -4.08 16 14 C -0.06 -1.82 9.62 22.54 0.22 -1.60 16 15 C -0.16 -5.44 5.87 -20.10 -0.12 -5.56 16 16 C 0.52 16.65 7.21 70.33 0.51 17.16 16 17 O -0.53 -18.35 11.89 19.93 0.24 -18.11 16 18 O -0.35 -9.60 9.14 -56.20 -0.51 -10.11 16 19 C 0.10 2.20 1.13 -10.79 -0.01 2.19 16 20 C -0.18 -3.54 8.37 71.98 0.60 -2.94 16 21 C -0.14 -1.93 8.85 71.98 0.64 -1.29 16 22 C -0.18 -3.96 8.37 71.98 0.60 -3.36 16 23 C -0.06 -2.22 9.60 22.53 0.22 -2.00 16 24 C -0.13 -4.63 9.68 22.23 0.22 -4.42 16 25 H 0.00 -0.12 7.43 -2.39 -0.02 -0.14 16 26 H 0.03 1.20 7.83 -2.39 -0.02 1.19 16 27 H 0.03 1.39 7.04 -2.38 -0.02 1.37 16 28 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 29 H 0.06 2.30 7.98 -2.39 -0.02 2.28 16 30 H 0.08 2.48 7.80 -2.39 -0.02 2.47 16 31 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 32 H 0.15 3.85 7.61 -2.91 -0.02 3.83 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.49 5.88 -2.39 -0.01 1.47 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 1.58 5.88 -2.38 -0.01 1.57 16 40 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.13 4.36 7.65 -2.91 -0.02 4.34 16 43 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -64.88 353.01 6.71 -58.17 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.98 Total: 15.30 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 5.89 Total: -6.24 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -1.91 Total: -85.85 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.28 Total: -28.23 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.88 6.71 -58.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158171453.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.701 kcal (2) G-P(sol) polarization free energy of solvation -64.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds