Wall clock time and date at job start Tue Mar 31 2020 07:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47068 * 2 1 4 4 C 1.52993 * 109.47196 * 239.99738 * 2 1 3 5 5 O 1.42904 * 109.46706 * 119.99527 * 2 1 3 6 6 C 1.42904 * 113.99820 * 60.00501 * 5 2 1 7 7 C 1.50701 * 109.47257 * 179.97438 * 6 5 2 8 8 O 1.21294 * 119.99538 * 4.45142 * 7 6 5 9 9 N 1.34767 * 120.00136 * 184.45894 * 7 6 5 10 10 C 1.37103 * 120.00186 * 5.01226 * 9 7 6 11 11 H 1.07996 * 119.99586 * 38.31772 * 10 9 7 12 12 C 1.38947 * 120.00170 * 218.30859 * 10 9 7 13 13 N 1.31411 * 119.99964 * 20.08639 * 12 10 9 14 14 Si 1.86800 * 119.99872 * 200.08202 * 12 10 9 15 15 H 1.48499 * 109.47177 * 60.00535 * 14 12 10 16 16 H 1.48506 * 109.47075 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47096 * 300.00284 * 14 12 10 18 18 C 1.46505 * 120.00022 * 185.02502 * 9 7 6 19 19 C 1.50707 * 109.46590 * 269.99271 * 18 9 7 20 20 C 1.38240 * 119.99843 * 89.99775 * 19 18 9 21 21 C 1.38232 * 119.99870 * 179.97438 * 20 19 18 22 22 C 1.38228 * 119.99958 * 359.97438 * 21 20 19 23 23 C 1.38237 * 120.00308 * 0.27308 * 22 21 20 24 24 C 1.38230 * 119.99788 * 359.51103 * 23 22 21 25 25 H 1.08992 * 109.47325 * 300.00117 * 1 2 3 26 26 H 1.09001 * 109.47085 * 60.00287 * 1 2 3 27 27 H 1.08996 * 109.47404 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47248 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46933 * 299.99806 * 3 2 1 30 30 H 1.09009 * 109.47121 * 59.99616 * 3 2 1 31 31 H 1.08994 * 109.47582 * 300.00043 * 4 2 1 32 32 H 1.08998 * 109.47435 * 60.00405 * 4 2 1 33 33 H 1.09003 * 109.47194 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.47234 * 59.99704 * 6 5 2 35 35 H 1.08997 * 109.47043 * 299.99926 * 6 5 2 36 36 H 0.97003 * 119.99477 * 174.97159 * 13 12 10 37 37 H 1.08995 * 109.47386 * 149.99706 * 18 9 7 38 38 H 1.08995 * 109.47397 * 29.98970 * 18 9 7 39 39 H 1.08007 * 119.99832 * 359.97438 * 20 19 18 40 40 H 1.08000 * 119.99512 * 179.97438 * 21 20 19 41 41 H 1.08003 * 120.00213 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.99862 * 179.72680 * 23 22 21 43 43 H 1.07998 * 120.00489 * 180.27991 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0063 -0.6736 1.1669 6 6 1.5846 -2.0355 1.2646 7 6 2.1418 -2.6447 2.5253 8 8 2.7642 -1.9573 3.3073 9 7 1.9488 -3.9532 2.7839 10 6 1.3358 -4.7526 1.8539 11 1 1.5422 -4.6142 0.8029 12 6 0.4491 -5.7408 2.2636 13 7 -0.1075 -5.6726 3.4521 14 14 0.0482 -7.1663 1.1249 15 1 1.2930 -7.9109 0.8066 16 1 -0.9167 -8.0768 1.7923 17 1 -0.5509 -6.6444 -0.1296 18 6 2.3938 -4.5214 4.0588 19 6 3.8105 -5.0164 3.9209 20 6 4.8683 -4.1693 4.1938 21 6 6.1678 -4.6236 4.0678 22 6 6.4094 -5.9250 3.6694 23 6 5.3517 -6.7705 3.3915 24 6 4.0522 -6.3177 3.5218 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6768 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 1.9491 -2.5916 0.4009 35 1 0.4958 -2.0777 1.2907 36 1 -0.7809 -6.3213 3.7102 37 1 1.7437 -5.3522 4.3330 38 1 2.3504 -3.7553 4.8329 39 1 4.6794 -3.1526 4.5055 40 1 6.9942 -3.9616 4.2806 41 1 7.4247 -6.2798 3.5705 42 1 5.5407 -7.7859 3.0759 43 1 3.2258 -6.9795 3.3091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158509839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:49 Heat of formation + Delta-G solvation = -58.391138 kcal Electronic energy + Delta-G solvation = -23968.218388 eV Core-core repulsion = 20592.530397 eV Total energy + Delta-G solvation = -3375.687990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.21960 -38.55001 -37.53376 -34.82687 -32.95512 -31.89447 -30.84010 -30.23593 -27.91344 -27.20503 -26.76328 -25.52217 -24.05198 -21.87012 -20.75028 -19.61881 -19.14572 -17.18928 -16.55022 -16.02716 -15.51110 -15.09884 -14.67278 -14.65268 -14.47635 -14.20717 -13.96953 -13.72175 -13.06995 -12.97131 -12.77000 -12.42696 -12.14251 -12.05269 -11.98919 -11.65728 -11.58108 -11.54180 -11.40847 -11.29857 -10.97218 -10.89687 -10.73034 -10.52997 -10.34412 -10.22398 -10.12194 -9.21680 -9.01363 -8.48629 -8.28406 -8.01381 -7.56026 -6.46409 -4.16688 1.97852 2.04555 3.05123 3.14672 3.16614 3.81573 3.88683 4.09682 4.43180 4.88132 4.99625 5.05953 5.16492 5.30444 5.46092 5.51831 5.61712 5.66631 5.68724 5.84138 5.86902 5.91201 5.98202 6.02832 6.07902 6.11178 6.16891 6.18996 6.23225 6.31271 6.47320 6.49276 6.52731 6.65790 6.79475 7.07642 7.09521 7.15980 7.36125 7.49179 7.66666 7.75452 7.86668 8.29483 9.00382 9.45160 9.88636 10.55854 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011857 B = 0.006186 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.831747 B = 4525.526751 C = 6042.621807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 C -0.134 4.134 4 C -0.179 4.179 5 O -0.357 6.357 6 C 0.061 3.939 7 C 0.479 3.521 8 O -0.584 6.584 9 N -0.433 5.433 10 C -0.342 4.342 11 H 0.086 0.914 12 C 0.049 3.951 13 N -0.858 5.858 14 Si 0.910 3.090 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.149 3.851 19 C -0.078 4.078 20 C -0.102 4.102 21 C -0.133 4.133 22 C -0.135 4.135 23 C -0.133 4.133 24 C -0.097 4.097 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.273 0.727 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.385 2.759 -5.333 6.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.064 3.936 3 C -0.191 4.191 4 C -0.236 4.236 5 O -0.276 6.276 6 C -0.018 4.018 7 C 0.267 3.733 8 O -0.468 6.468 9 N -0.153 5.153 10 C -0.470 4.470 11 H 0.104 0.896 12 C -0.158 4.158 13 N -0.494 5.494 14 Si 0.736 3.264 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.197 1.197 18 C 0.026 3.974 19 C -0.079 4.079 20 C -0.120 4.120 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.115 4.115 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.131 0.869 38 H 0.082 0.918 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.684 3.043 -4.649 6.666 hybrid contribution -0.515 -1.072 -0.963 1.530 sum 3.168 1.971 -5.612 6.739 Atomic orbital electron populations 1.22436 0.96070 1.02888 1.02246 1.21454 0.93028 0.93128 0.86003 1.21711 1.01831 0.93646 1.01923 1.22436 1.02089 1.01377 0.97717 1.88054 1.74056 1.23711 1.41801 1.22066 0.99590 0.82432 0.97678 1.20084 0.83224 0.82308 0.87681 1.90524 1.44579 1.61407 1.50242 1.43248 1.51056 1.05037 1.15928 1.19342 1.23915 1.14405 0.89352 0.89624 1.25364 0.94715 0.99217 0.96491 1.69822 1.23696 1.35633 1.20248 0.86266 0.78582 0.81280 0.80264 1.19543 1.20742 1.19672 1.20418 0.89634 1.00256 0.87105 1.20625 0.97050 0.93389 0.96877 1.21305 0.92064 0.99812 0.98862 1.21050 0.96703 0.95784 1.01545 1.20960 0.98221 0.94404 1.01731 1.21036 0.93049 0.99290 1.01773 1.21102 0.96330 0.95929 0.98178 0.91796 0.92043 0.91761 0.91980 0.91637 0.91907 0.91868 0.91990 0.91901 0.91600 0.90745 0.91664 0.86852 0.91819 0.85659 0.87007 0.87173 0.86994 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 8.25 37.16 0.31 -2.16 16 2 C 0.10 1.59 1.14 -90.62 -0.10 1.48 16 3 C -0.13 -1.73 8.84 37.16 0.33 -1.41 16 4 C -0.18 -2.43 8.25 37.15 0.31 -2.12 16 5 O -0.36 -7.30 9.52 -55.10 -0.52 -7.82 16 6 C 0.06 1.30 4.50 36.01 0.16 1.46 16 7 C 0.48 11.97 7.69 -10.99 -0.08 11.88 16 8 O -0.58 -15.85 15.34 -14.33 -0.22 -16.07 16 9 N -0.43 -10.75 2.50 -116.09 -0.29 -11.04 16 10 C -0.34 -8.36 8.57 -14.93 -0.13 -8.49 16 11 H 0.09 2.02 7.00 -52.49 -0.37 1.65 16 12 C 0.05 1.17 4.98 -17.47 -0.09 1.09 16 13 N -0.86 -21.59 11.43 55.50 0.63 -20.96 16 14 Si 0.91 18.63 29.60 -169.99 -5.03 13.60 16 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 16 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 18 C 0.15 3.55 5.09 -5.19 -0.03 3.52 16 19 C -0.08 -1.69 5.46 -104.62 -0.57 -2.26 16 20 C -0.10 -2.08 9.57 -39.58 -0.38 -2.46 16 21 C -0.13 -2.33 10.05 -39.59 -0.40 -2.73 16 22 C -0.13 -2.20 10.05 -39.59 -0.40 -2.60 16 23 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 24 C -0.10 -1.93 9.70 -39.59 -0.38 -2.31 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.93 6.54 -51.93 -0.34 0.59 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.06 0.89 6.54 -51.93 -0.34 0.55 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.32 5.61 -51.93 -0.29 1.03 16 35 H 0.07 1.54 6.42 -51.93 -0.33 1.21 16 36 H 0.27 6.51 8.32 -40.82 -0.34 6.17 16 37 H 0.11 2.81 5.47 -51.93 -0.28 2.53 16 38 H 0.06 1.56 7.44 -51.93 -0.39 1.18 16 39 H 0.13 2.69 7.38 -52.48 -0.39 2.30 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 351.84 15.07 5.30 5.30 Total: -1.00 -28.69 351.84 -8.50 -37.18 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.52 Total: 9.60 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -1.85 Total: -9.80 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.34 Total: -32.00 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.74 Total: -23.89 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.69 -8.50 -37.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158509839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.208 kcal (2) G-P(sol) polarization free energy of solvation -28.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds