Wall clock time and date at job start Tue Mar 31 2020 07:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47068 * 2 1 4 4 C 1.52993 * 109.47196 * 239.99738 * 2 1 3 5 5 O 1.42904 * 109.46706 * 119.99527 * 2 1 3 6 6 C 1.42904 * 113.99820 * 60.00501 * 5 2 1 7 7 C 1.50701 * 109.47257 * 179.97438 * 6 5 2 8 8 O 1.21294 * 119.99538 * 4.45142 * 7 6 5 9 9 N 1.34767 * 120.00136 * 184.45894 * 7 6 5 10 10 C 1.37103 * 120.00186 * 5.01226 * 9 7 6 11 11 H 1.07996 * 119.99586 * 38.31772 * 10 9 7 12 12 C 1.38947 * 120.00170 * 218.30859 * 10 9 7 13 13 N 1.31411 * 119.99964 * 20.08639 * 12 10 9 14 14 Si 1.86800 * 119.99872 * 200.08202 * 12 10 9 15 15 H 1.48499 * 109.47177 * 60.00535 * 14 12 10 16 16 H 1.48506 * 109.47075 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47096 * 300.00284 * 14 12 10 18 18 C 1.46505 * 120.00022 * 185.02502 * 9 7 6 19 19 C 1.50707 * 109.46590 * 269.99271 * 18 9 7 20 20 C 1.38240 * 119.99843 * 89.99775 * 19 18 9 21 21 C 1.38232 * 119.99870 * 179.97438 * 20 19 18 22 22 C 1.38228 * 119.99958 * 359.97438 * 21 20 19 23 23 C 1.38237 * 120.00308 * 0.27308 * 22 21 20 24 24 C 1.38230 * 119.99788 * 359.51103 * 23 22 21 25 25 H 1.08992 * 109.47325 * 300.00117 * 1 2 3 26 26 H 1.09001 * 109.47085 * 60.00287 * 1 2 3 27 27 H 1.08996 * 109.47404 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47248 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46933 * 299.99806 * 3 2 1 30 30 H 1.09009 * 109.47121 * 59.99616 * 3 2 1 31 31 H 1.08994 * 109.47582 * 300.00043 * 4 2 1 32 32 H 1.08998 * 109.47435 * 60.00405 * 4 2 1 33 33 H 1.09003 * 109.47194 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.47234 * 59.99704 * 6 5 2 35 35 H 1.08997 * 109.47043 * 299.99926 * 6 5 2 36 36 H 0.97003 * 119.99477 * 174.97159 * 13 12 10 37 37 H 1.08995 * 109.47386 * 149.99706 * 18 9 7 38 38 H 1.08995 * 109.47397 * 29.98970 * 18 9 7 39 39 H 1.08007 * 119.99832 * 359.97438 * 20 19 18 40 40 H 1.08000 * 119.99512 * 179.97438 * 21 20 19 41 41 H 1.08003 * 120.00213 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.99862 * 179.72680 * 23 22 21 43 43 H 1.07998 * 120.00489 * 180.27991 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0063 -0.6736 1.1669 6 6 1.5846 -2.0355 1.2646 7 6 2.1418 -2.6447 2.5253 8 8 2.7642 -1.9573 3.3073 9 7 1.9488 -3.9532 2.7839 10 6 1.3358 -4.7526 1.8539 11 1 1.5422 -4.6142 0.8029 12 6 0.4491 -5.7408 2.2636 13 7 -0.1075 -5.6726 3.4521 14 14 0.0482 -7.1663 1.1249 15 1 1.2930 -7.9109 0.8066 16 1 -0.9167 -8.0768 1.7923 17 1 -0.5509 -6.6444 -0.1296 18 6 2.3938 -4.5214 4.0588 19 6 3.8105 -5.0164 3.9209 20 6 4.8683 -4.1693 4.1938 21 6 6.1678 -4.6236 4.0678 22 6 6.4094 -5.9250 3.6694 23 6 5.3517 -6.7705 3.3915 24 6 4.0522 -6.3177 3.5218 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6768 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 1.9491 -2.5916 0.4009 35 1 0.4958 -2.0777 1.2907 36 1 -0.7809 -6.3213 3.7102 37 1 1.7437 -5.3522 4.3330 38 1 2.3504 -3.7553 4.8329 39 1 4.6794 -3.1526 4.5055 40 1 6.9942 -3.9616 4.2806 41 1 7.4247 -6.2798 3.5705 42 1 5.5407 -7.7859 3.0759 43 1 3.2258 -6.9795 3.3091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158509839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:49 Heat of formation + Delta-G solvation = -72.282605 kcal Electronic energy + Delta-G solvation = -23968.820767 eV Core-core repulsion = 20592.530397 eV Total energy + Delta-G solvation = -3376.290370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93492 -39.98797 -39.14778 -36.72798 -34.31260 -33.72058 -32.52150 -31.70068 -29.39617 -28.29172 -28.06353 -27.33701 -25.80291 -23.34484 -22.29050 -21.12739 -20.80827 -18.97056 -18.15171 -17.49047 -17.16882 -16.71346 -16.41186 -16.29281 -15.98853 -15.73857 -15.35812 -15.24450 -14.54970 -14.32210 -14.21458 -14.02948 -13.66745 -13.52574 -13.22219 -13.12793 -13.02545 -12.82272 -12.75487 -12.65695 -12.63570 -12.51910 -12.16908 -12.13032 -11.91001 -11.75165 -11.47987 -11.07255 -10.47875 -10.36648 -9.75271 -9.57163 -9.49288 -8.33086 -6.10812 0.49746 0.56981 1.41107 1.48242 1.56152 1.96408 2.22276 2.45392 2.93343 3.04951 3.48559 3.93528 3.94224 4.03961 4.12065 4.13775 4.22231 4.25139 4.35801 4.38384 4.47829 4.59946 4.66524 4.70240 4.73528 4.82235 4.85848 4.87348 4.94125 4.94449 5.13687 5.14718 5.21408 5.27252 5.37435 5.38649 5.45115 5.63873 5.65311 5.87691 5.98658 6.20718 6.30043 6.42894 7.09603 7.53031 7.97406 8.70210 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011857 B = 0.006186 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.831747 B = 4525.526751 C = 6042.621807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.087 3.913 3 C -0.131 4.131 4 C -0.174 4.174 5 O -0.387 6.387 6 C 0.079 3.921 7 C 0.456 3.544 8 O -0.618 6.618 9 N -0.436 5.436 10 C -0.359 4.359 11 H 0.093 0.907 12 C 0.015 3.985 13 N -0.889 5.889 14 Si 0.976 3.024 15 H -0.265 1.265 16 H -0.282 1.282 17 H -0.261 1.261 18 C 0.154 3.846 19 C -0.102 4.102 20 C -0.123 4.123 21 C -0.129 4.129 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.112 4.112 25 H 0.053 0.947 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.276 0.724 37 H 0.100 0.900 38 H 0.037 0.963 39 H 0.101 0.899 40 H 0.140 0.860 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.630 1.641 -7.758 9.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.049 3.951 3 C -0.188 4.188 4 C -0.232 4.232 5 O -0.307 6.307 6 C 0.000 4.000 7 C 0.246 3.754 8 O -0.505 6.505 9 N -0.155 5.155 10 C -0.486 4.486 11 H 0.111 0.889 12 C -0.189 4.189 13 N -0.525 5.525 14 Si 0.799 3.201 15 H -0.189 1.189 16 H -0.207 1.207 17 H -0.186 1.186 18 C 0.031 3.969 19 C -0.103 4.103 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.131 4.131 25 H 0.072 0.928 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.056 0.944 39 H 0.119 0.881 40 H 0.158 0.842 41 H 0.173 0.827 42 H 0.165 0.835 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.926 1.927 -7.084 8.841 hybrid contribution -0.866 -0.686 -0.167 1.118 sum 4.060 1.241 -7.252 8.403 Atomic orbital electron populations 1.22411 0.94937 1.02479 1.03428 1.21934 0.94154 0.94033 0.85026 1.21753 1.01514 0.92235 1.03282 1.22402 1.01700 1.01003 0.98048 1.88022 1.74814 1.23146 1.44723 1.21775 0.99049 0.83282 0.95847 1.20862 0.83273 0.82360 0.88921 1.90480 1.46221 1.62113 1.51699 1.43485 1.50676 1.05310 1.16047 1.19630 1.24504 1.14842 0.89621 0.88920 1.26149 0.94100 1.00886 0.97799 1.69934 1.24163 1.36445 1.21973 0.85256 0.78416 0.77914 0.78549 1.18940 1.20679 1.18556 1.20245 0.91518 0.98711 0.86414 1.20426 0.95698 0.94748 0.99403 1.21210 0.93593 0.98806 1.00564 1.21377 0.95854 0.97117 1.00337 1.21444 1.00122 0.93232 0.99138 1.21422 0.91745 1.01022 1.00158 1.21106 0.97794 0.94966 0.99183 0.92777 0.88676 0.92943 0.92548 0.88049 0.92739 0.92821 0.88699 0.92509 0.90586 0.90767 0.91449 0.88233 0.94446 0.88115 0.84176 0.82691 0.83489 0.87212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.64 8.25 71.98 0.59 -4.05 16 2 C 0.09 2.60 1.14 -10.80 -0.01 2.59 16 3 C -0.13 -3.21 8.84 71.98 0.64 -2.57 16 4 C -0.17 -4.44 8.25 71.98 0.59 -3.84 16 5 O -0.39 -16.24 9.52 -129.98 -1.24 -17.48 16 6 C 0.08 3.49 4.50 71.24 0.32 3.81 16 7 C 0.46 24.06 7.69 87.66 0.67 24.73 16 8 O -0.62 -35.82 15.34 15.92 0.24 -35.57 16 9 N -0.44 -22.75 2.50 -639.60 -1.60 -24.35 16 10 C -0.36 -17.92 8.57 84.04 0.72 -17.20 16 11 H 0.09 4.41 7.00 -2.91 -0.02 4.39 16 12 C 0.01 0.72 4.98 84.93 0.42 1.15 16 13 N -0.89 -46.02 11.43 21.66 0.25 -45.77 16 14 Si 0.98 37.78 29.60 68.60 2.03 39.81 16 15 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 16 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 17 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 18 C 0.15 7.86 5.09 85.63 0.44 8.30 16 19 C -0.10 -4.56 5.46 -19.86 -0.11 -4.67 16 20 C -0.12 -5.19 9.57 22.27 0.21 -4.98 16 21 C -0.13 -4.30 10.05 22.27 0.22 -4.08 16 22 C -0.12 -3.51 10.05 22.27 0.22 -3.28 16 23 C -0.13 -3.96 10.05 22.27 0.22 -3.74 16 24 C -0.11 -4.44 9.70 22.27 0.22 -4.23 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 26 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.05 1.50 6.54 -2.39 -0.02 1.48 16 28 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.05 1.45 6.54 -2.39 -0.02 1.44 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 3.11 5.61 -2.39 -0.01 3.10 16 35 H 0.07 3.20 6.42 -2.39 -0.02 3.19 16 36 H 0.28 13.42 8.32 -92.71 -0.77 12.65 16 37 H 0.10 5.28 5.47 -2.39 -0.01 5.26 16 38 H 0.04 2.02 7.44 -2.39 -0.02 2.00 16 39 H 0.10 4.67 7.38 -2.91 -0.02 4.64 16 40 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 41 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 42 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 43 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -65.64 351.84 6.05 -59.59 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: 0.99 Total: 35.86 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 5.38 Total: -12.07 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -1.35 Total: -70.13 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -0.99 Total: -53.05 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -65.64 6.05 -59.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158509839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.697 kcal (2) G-P(sol) polarization free energy of solvation -65.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds