Wall clock time and date at job start Tue Mar 31 2020 07:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47396 * 2 1 4 4 H 1.08997 * 109.47130 * 179.30259 * 3 2 1 5 5 C 1.52999 * 109.47009 * 299.30336 * 3 2 1 6 6 C 1.53002 * 109.47228 * 294.40753 * 5 3 2 7 7 O 1.42903 * 109.47153 * 185.20250 * 6 5 3 8 8 C 1.52996 * 109.47048 * 59.30323 * 3 2 1 9 9 N 1.46499 * 109.47296 * 65.00008 * 8 3 2 10 10 C 1.34776 * 120.00288 * 179.97438 * 9 8 3 11 11 O 1.21549 * 119.99597 * 0.02562 * 10 9 8 12 12 C 1.47884 * 120.00165 * 180.02562 * 10 9 8 13 13 C 1.39918 * 120.02267 * 359.72505 * 12 10 9 14 14 C 1.38334 * 120.35642 * 179.78591 * 13 12 10 15 15 C 1.37752 * 120.40880 * 0.47358 * 14 13 12 16 16 C 1.40751 * 120.04212 * 359.78283 * 15 14 13 17 17 C 1.41433 * 120.17610 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99885 * 149.46917 * 17 16 15 19 19 C 1.39941 * 120.00512 * 329.46409 * 17 16 15 20 20 N 1.30826 * 120.00296 * 162.91869 * 19 17 16 21 21 Si 1.86802 * 119.99423 * 342.92524 * 19 17 16 22 22 H 1.48500 * 109.47003 * 94.98462 * 21 19 17 23 23 H 1.48502 * 109.46894 * 214.97999 * 21 19 17 24 24 H 1.48492 * 109.47420 * 334.98120 * 21 19 17 25 25 C 1.38995 * 120.02532 * 180.02562 * 12 10 9 26 26 H 1.08998 * 109.47434 * 180.43518 * 1 2 3 27 27 H 1.09007 * 109.47055 * 60.43898 * 1 2 3 28 28 H 1.08997 * 109.47317 * 300.44098 * 1 2 3 29 29 H 1.08999 * 109.46954 * 119.99956 * 2 1 3 30 30 H 1.09004 * 109.46820 * 239.99545 * 2 1 3 31 31 H 1.09001 * 109.47253 * 54.40675 * 5 3 2 32 32 H 1.09000 * 109.46984 * 174.40830 * 5 3 2 33 33 H 1.09001 * 109.46970 * 305.20017 * 6 5 3 34 34 H 1.08993 * 109.47114 * 65.20084 * 6 5 3 35 35 H 0.96705 * 113.99661 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46924 * 185.00330 * 8 3 2 37 37 H 1.09001 * 109.47159 * 304.99649 * 8 3 2 38 38 H 0.96996 * 119.99671 * 0.02562 * 9 8 3 39 39 H 1.07998 * 119.82293 * 0.02562 * 13 12 10 40 40 H 1.07995 * 119.79249 * 180.23612 * 14 13 12 41 41 H 1.08004 * 119.97709 * 179.76502 * 15 14 13 42 42 H 0.96997 * 120.00028 * 180.02562 * 20 19 17 43 43 H 1.08005 * 120.20135 * 359.95690 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4424 0.0125 5 6 1.5444 2.1586 -1.2579 6 6 2.1801 1.5180 -2.4934 7 8 1.8135 2.2615 -3.6574 8 6 1.5158 2.1687 1.2403 9 7 2.0862 1.5560 2.4426 10 6 1.7641 2.0347 3.6606 11 8 1.0000 2.9746 3.7616 12 6 2.3403 1.4165 4.8742 13 6 3.2154 0.3309 4.7588 14 6 3.7619 -0.2498 5.8892 15 6 3.4435 0.2274 7.1415 16 6 2.5608 1.3153 7.2777 17 6 2.2324 1.8079 8.5621 18 1 1.9986 2.8538 8.6958 19 6 2.2102 0.9401 9.6598 20 7 2.2407 1.4223 10.8756 21 14 2.1371 -0.9067 9.3889 22 1 3.5120 -1.4668 9.4237 23 1 1.3206 -1.5321 10.4601 24 1 1.5208 -1.1893 8.0679 25 6 2.0081 1.9095 6.1306 26 1 -0.3634 -1.0276 0.0078 27 1 -0.3633 0.5070 -0.8940 28 1 -0.3634 0.5206 0.8860 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 0.4597 2.0725 -1.3215 32 1 1.8232 3.2113 -1.2103 33 1 3.2649 1.5214 -2.3869 34 1 1.8279 0.4913 -2.5922 35 1 2.1824 1.9116 -4.4800 36 1 1.8047 3.2188 1.1957 37 1 0.4290 2.0921 1.2741 38 1 2.6962 0.8062 2.3620 39 1 3.4686 -0.0533 3.7817 40 1 4.4393 -1.0849 5.7893 41 1 3.8712 -0.2337 8.0195 42 1 2.2257 0.8208 11.6364 43 1 1.3297 2.7447 6.2246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176305910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:17 Heat of formation + Delta-G solvation = -91.405423 kcal Electronic energy + Delta-G solvation = -22658.589778 eV Core-core repulsion = 19281.470181 eV Total energy + Delta-G solvation = -3377.119597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.68166 -38.33716 -37.28538 -36.43460 -33.81888 -33.43942 -30.75313 -30.65169 -30.05115 -27.86870 -25.29129 -24.61082 -23.56557 -22.27607 -20.70604 -19.99560 -19.47643 -18.07081 -17.47101 -16.42847 -16.33477 -15.75562 -15.59032 -15.34960 -14.69416 -14.39107 -14.26007 -14.02154 -13.66323 -13.58585 -12.89090 -12.78028 -12.73229 -12.50940 -12.28584 -12.05687 -11.94312 -11.69284 -11.59853 -11.06409 -10.90872 -10.90013 -10.77470 -10.68805 -10.55167 -10.21721 -10.01721 -9.73433 -9.44262 -9.15171 -8.80616 -7.88029 -7.76583 -7.00473 -4.56445 1.90847 2.50093 3.04367 3.16561 3.24900 3.41774 3.62426 3.92333 3.95796 4.45629 4.47586 4.52441 4.71583 4.87505 4.99855 5.08209 5.19667 5.30674 5.34373 5.37088 5.43277 5.50432 5.62491 5.74348 5.78800 5.86140 5.90956 5.99116 6.00374 6.01780 6.23879 6.37539 6.64224 6.65248 6.72099 6.97077 7.20024 7.25580 7.39071 7.47929 7.73950 7.79411 8.00697 8.27552 8.51944 8.68717 8.73000 10.01792 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034637 B = 0.002946 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.184146 B = 9502.321472 C = 9777.727672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.123 4.123 3 C -0.097 4.097 4 H 0.079 0.921 5 C -0.116 4.116 6 C 0.076 3.924 7 O -0.576 6.576 8 C 0.123 3.877 9 N -0.732 5.732 10 C 0.562 3.438 11 O -0.548 6.548 12 C -0.108 4.108 13 C -0.216 4.216 14 C -0.084 4.084 15 C -0.221 4.221 16 C 0.082 3.918 17 C -0.442 4.442 18 H 0.094 0.906 19 C 0.083 3.917 20 N -0.805 5.805 21 Si 0.911 3.089 22 H -0.270 1.270 23 H -0.289 1.289 24 H -0.244 1.244 25 C -0.135 4.135 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.378 0.622 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.399 0.601 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.286 0.714 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.410 -5.658 -21.481 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.160 4.160 3 C -0.116 4.116 4 H 0.097 0.903 5 C -0.154 4.154 6 C -0.002 4.002 7 O -0.382 6.382 8 C -0.001 4.001 9 N -0.386 5.386 10 C 0.352 3.648 11 O -0.426 6.426 12 C -0.111 4.111 13 C -0.236 4.236 14 C -0.102 4.102 15 C -0.241 4.241 16 C 0.079 3.921 17 C -0.471 4.471 18 H 0.112 0.888 19 C -0.137 4.137 20 N -0.429 5.429 21 Si 0.738 3.262 22 H -0.196 1.196 23 H -0.217 1.217 24 H -0.167 1.167 25 C -0.155 4.155 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.225 0.775 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.235 0.765 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.509 -4.586 -20.663 21.172 hybrid contribution 0.714 -1.578 -0.327 1.763 sum 1.223 -6.164 -20.990 21.910 Atomic orbital electron populations 1.21913 0.95580 1.01806 1.02383 1.21603 0.96729 0.95579 1.02109 1.21345 1.00883 0.95547 0.93846 0.90291 1.21510 1.01828 1.00392 0.91654 1.22232 0.98039 0.94372 0.85529 1.86483 1.76977 1.57358 1.17347 1.21340 0.98878 0.96852 0.82995 1.45919 1.50159 1.37078 1.05453 1.18775 0.80172 0.82430 0.83378 1.90701 1.36214 1.28618 1.87101 1.19438 1.00894 0.98575 0.92232 1.20373 1.05479 1.00929 0.96790 1.20510 0.98580 0.98288 0.92817 1.21183 1.03710 1.03118 0.96078 1.17708 0.90045 0.91066 0.93315 1.19523 1.39711 0.98249 0.89589 0.88829 1.26168 0.91005 1.02163 0.94322 1.69681 1.34666 1.38951 0.99575 0.86304 0.78929 0.81396 0.79602 1.19569 1.21687 1.16681 1.21289 1.01451 1.02396 0.90395 0.92779 0.92417 0.91903 0.91508 0.91804 0.90415 0.90795 0.93686 0.93403 0.77487 0.91708 0.91106 0.76489 0.88685 0.88302 0.87883 0.90321 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.22 37.16 0.34 -1.06 16 2 C -0.12 -0.99 5.36 -26.73 -0.14 -1.14 16 3 C -0.10 -0.84 2.19 -90.62 -0.20 -1.04 16 4 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 5 C -0.12 -0.98 4.86 -26.73 -0.13 -1.11 16 6 C 0.08 0.55 6.69 37.16 0.25 0.79 16 7 O -0.58 -4.70 13.66 -35.23 -0.48 -5.19 16 8 C 0.12 1.50 4.83 -4.04 -0.02 1.48 16 9 N -0.73 -10.55 5.24 -61.24 -0.32 -10.88 16 10 C 0.56 10.99 7.77 -12.31 -0.10 10.89 16 11 O -0.55 -12.43 16.33 5.32 0.09 -12.34 16 12 C -0.11 -2.30 5.87 -105.04 -0.62 -2.92 16 13 C -0.22 -4.11 9.55 -38.92 -0.37 -4.48 16 14 C -0.08 -1.69 10.01 -39.72 -0.40 -2.08 16 15 C -0.22 -5.13 7.14 -38.81 -0.28 -5.41 16 16 C 0.08 2.06 5.09 -106.87 -0.54 1.51 16 17 C -0.44 -11.92 9.57 -37.73 -0.36 -12.28 16 18 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 19 C 0.08 2.14 5.41 -17.34 -0.09 2.05 16 20 N -0.80 -21.24 13.93 55.55 0.77 -20.47 16 21 Si 0.91 20.34 24.50 -169.99 -4.16 16.17 16 22 H -0.27 -5.76 6.71 56.52 0.38 -5.38 16 23 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.24 -5.56 6.84 56.52 0.39 -5.18 16 25 C -0.14 -3.26 9.34 -38.44 -0.36 -3.62 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.47 6.35 -51.93 -0.33 0.14 16 28 H 0.06 0.66 6.28 -51.93 -0.33 0.33 16 29 H 0.07 0.58 7.20 -51.93 -0.37 0.20 16 30 H 0.06 0.43 6.67 -51.93 -0.35 0.08 16 31 H 0.08 0.69 6.18 -51.93 -0.32 0.37 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.30 6.82 -51.93 -0.35 -0.06 16 35 H 0.38 1.34 9.12 45.56 0.42 1.75 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.92 6.15 -51.93 -0.32 0.60 16 38 H 0.40 4.88 5.67 -40.82 -0.23 4.65 16 39 H 0.10 1.44 6.38 -52.49 -0.33 1.10 16 40 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.10 2.37 4.72 -52.48 -0.25 2.12 16 42 H 0.29 6.81 8.30 -40.82 -0.34 6.48 16 43 H 0.12 2.85 7.64 -52.48 -0.40 2.45 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -30.61 341.50 -7.28 -37.89 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.30 Total: 8.08 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -3.02 Total: -18.41 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.45 Total: -31.34 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.39 Total: -17.53 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.16 Total: 16.17 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.61 -7.28 -37.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176305910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.517 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds