Wall clock time and date at job start Tue Mar 31 2020 07:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47396 * 2 1 4 4 H 1.08997 * 109.47130 * 179.30259 * 3 2 1 5 5 C 1.52999 * 109.47009 * 299.30336 * 3 2 1 6 6 C 1.53002 * 109.47228 * 294.40753 * 5 3 2 7 7 O 1.42903 * 109.47153 * 185.20250 * 6 5 3 8 8 C 1.52996 * 109.47048 * 59.30323 * 3 2 1 9 9 N 1.46499 * 109.47296 * 65.00008 * 8 3 2 10 10 C 1.34776 * 120.00288 * 179.97438 * 9 8 3 11 11 O 1.21549 * 119.99597 * 0.02562 * 10 9 8 12 12 C 1.47884 * 120.00165 * 180.02562 * 10 9 8 13 13 C 1.39918 * 120.02267 * 359.72505 * 12 10 9 14 14 C 1.38334 * 120.35642 * 179.78591 * 13 12 10 15 15 C 1.37752 * 120.40880 * 0.47358 * 14 13 12 16 16 C 1.40751 * 120.04212 * 359.78283 * 15 14 13 17 17 C 1.41433 * 120.17610 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99885 * 149.46917 * 17 16 15 19 19 C 1.39941 * 120.00512 * 329.46409 * 17 16 15 20 20 N 1.30826 * 120.00296 * 162.91869 * 19 17 16 21 21 Si 1.86802 * 119.99423 * 342.92524 * 19 17 16 22 22 H 1.48500 * 109.47003 * 94.98462 * 21 19 17 23 23 H 1.48502 * 109.46894 * 214.97999 * 21 19 17 24 24 H 1.48492 * 109.47420 * 334.98120 * 21 19 17 25 25 C 1.38995 * 120.02532 * 180.02562 * 12 10 9 26 26 H 1.08998 * 109.47434 * 180.43518 * 1 2 3 27 27 H 1.09007 * 109.47055 * 60.43898 * 1 2 3 28 28 H 1.08997 * 109.47317 * 300.44098 * 1 2 3 29 29 H 1.08999 * 109.46954 * 119.99956 * 2 1 3 30 30 H 1.09004 * 109.46820 * 239.99545 * 2 1 3 31 31 H 1.09001 * 109.47253 * 54.40675 * 5 3 2 32 32 H 1.09000 * 109.46984 * 174.40830 * 5 3 2 33 33 H 1.09001 * 109.46970 * 305.20017 * 6 5 3 34 34 H 1.08993 * 109.47114 * 65.20084 * 6 5 3 35 35 H 0.96705 * 113.99661 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46924 * 185.00330 * 8 3 2 37 37 H 1.09001 * 109.47159 * 304.99649 * 8 3 2 38 38 H 0.96996 * 119.99671 * 0.02562 * 9 8 3 39 39 H 1.07998 * 119.82293 * 0.02562 * 13 12 10 40 40 H 1.07995 * 119.79249 * 180.23612 * 14 13 12 41 41 H 1.08004 * 119.97709 * 179.76502 * 15 14 13 42 42 H 0.96997 * 120.00028 * 180.02562 * 20 19 17 43 43 H 1.08005 * 120.20135 * 359.95690 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4424 0.0125 5 6 1.5444 2.1586 -1.2579 6 6 2.1801 1.5180 -2.4934 7 8 1.8135 2.2615 -3.6574 8 6 1.5158 2.1687 1.2403 9 7 2.0862 1.5560 2.4426 10 6 1.7641 2.0347 3.6606 11 8 1.0000 2.9746 3.7616 12 6 2.3403 1.4165 4.8742 13 6 3.2154 0.3309 4.7588 14 6 3.7619 -0.2498 5.8892 15 6 3.4435 0.2274 7.1415 16 6 2.5608 1.3153 7.2777 17 6 2.2324 1.8079 8.5621 18 1 1.9986 2.8538 8.6958 19 6 2.2102 0.9401 9.6598 20 7 2.2407 1.4223 10.8756 21 14 2.1371 -0.9067 9.3889 22 1 3.5120 -1.4668 9.4237 23 1 1.3206 -1.5321 10.4601 24 1 1.5208 -1.1893 8.0679 25 6 2.0081 1.9095 6.1306 26 1 -0.3634 -1.0276 0.0078 27 1 -0.3633 0.5070 -0.8940 28 1 -0.3634 0.5206 0.8860 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 0.4597 2.0725 -1.3215 32 1 1.8232 3.2113 -1.2103 33 1 3.2649 1.5214 -2.3869 34 1 1.8279 0.4913 -2.5922 35 1 2.1824 1.9116 -4.4800 36 1 1.8047 3.2188 1.1957 37 1 0.4290 2.0921 1.2741 38 1 2.6962 0.8062 2.3620 39 1 3.4686 -0.0533 3.7817 40 1 4.4393 -1.0849 5.7893 41 1 3.8712 -0.2337 8.0195 42 1 2.2257 0.8208 11.6364 43 1 1.3297 2.7447 6.2246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176305910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:17 Heat of formation + Delta-G solvation = -113.904103 kcal Electronic energy + Delta-G solvation = -22659.565394 eV Core-core repulsion = 19281.470181 eV Total energy + Delta-G solvation = -3378.095213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.11922 -39.41711 -38.73983 -37.20406 -35.60424 -34.79070 -32.48454 -31.77781 -31.30649 -28.89539 -27.06559 -25.55283 -24.68785 -23.40878 -22.45061 -21.54087 -20.34065 -19.50356 -18.31390 -17.99259 -17.27873 -17.18621 -16.94628 -16.45098 -16.33174 -15.52780 -15.44906 -15.24716 -14.85916 -14.70338 -14.57363 -14.39599 -13.87122 -13.61817 -13.43137 -13.28897 -13.09768 -12.84798 -12.71018 -12.65145 -12.31670 -12.27515 -11.76205 -11.61146 -11.58158 -11.53716 -11.37491 -11.20581 -10.84979 -10.73823 -10.14895 -9.62671 -9.54578 -8.91003 -6.56317 0.17842 0.74068 1.25130 1.41568 1.48541 1.95656 2.12567 2.17839 2.65681 3.35244 3.44951 3.72457 3.81770 3.93954 4.08293 4.25970 4.26428 4.40170 4.44499 4.45714 4.55457 4.56653 4.64962 4.67252 4.76281 4.88132 4.88648 4.91323 4.98212 5.12122 5.16233 5.21453 5.32017 5.33384 5.42104 5.43481 5.54900 5.64863 5.71090 5.84250 6.10846 6.29712 6.58598 6.65867 6.73694 6.94662 7.24680 8.18243 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034637 B = 0.002946 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.184146 B = 9502.321472 C = 9777.727672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.121 4.121 3 C -0.083 4.083 4 H 0.097 0.903 5 C -0.116 4.116 6 C 0.077 3.923 7 O -0.600 6.600 8 C 0.120 3.880 9 N -0.705 5.705 10 C 0.559 3.441 11 O -0.589 6.589 12 C -0.113 4.113 13 C -0.179 4.179 14 C -0.082 4.082 15 C -0.224 4.224 16 C 0.065 3.935 17 C -0.490 4.490 18 H 0.048 0.952 19 C 0.043 3.957 20 N -0.852 5.852 21 Si 0.969 3.031 22 H -0.245 1.245 23 H -0.279 1.279 24 H -0.250 1.250 25 C -0.168 4.168 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.397 0.603 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.415 0.585 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.107 0.893 42 H 0.295 0.705 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.519 -9.487 -25.208 27.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.158 4.158 3 C -0.102 4.102 4 H 0.115 0.885 5 C -0.154 4.154 6 C 0.000 4.000 7 O -0.409 6.409 8 C -0.004 4.004 9 N -0.358 5.358 10 C 0.348 3.652 11 O -0.471 6.471 12 C -0.117 4.117 13 C -0.199 4.199 14 C -0.100 4.100 15 C -0.243 4.243 16 C 0.062 3.938 17 C -0.519 4.519 18 H 0.066 0.934 19 C -0.171 4.171 20 N -0.478 5.478 21 Si 0.791 3.209 22 H -0.170 1.170 23 H -0.205 1.205 24 H -0.174 1.174 25 C -0.188 4.188 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.247 0.753 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.253 0.747 39 H 0.169 0.831 40 H 0.167 0.833 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.655 -8.439 -24.444 25.995 hybrid contribution 0.081 -0.334 0.508 0.613 sum 2.737 -8.773 -23.935 25.639 Atomic orbital electron populations 1.21913 0.96511 1.01884 1.01498 1.21632 0.95856 0.94976 1.03345 1.21248 1.01709 0.95503 0.91720 0.88482 1.21481 1.01539 0.99902 0.92516 1.22236 0.98641 0.94604 0.84542 1.86430 1.77603 1.58265 1.18629 1.21514 0.98496 0.96871 0.83487 1.45698 1.49110 1.36590 1.04394 1.18625 0.79972 0.82112 0.84447 1.90692 1.38154 1.30532 1.87736 1.19715 1.01086 0.99100 0.91755 1.21016 1.01615 0.97963 0.99278 1.21062 0.98486 0.99107 0.91328 1.21406 1.02804 1.02036 0.98088 1.17779 0.90973 0.92458 0.92551 1.19459 1.43809 0.96843 0.91832 0.93396 1.26932 0.90259 1.06308 0.93620 1.69718 1.37018 1.40655 1.00414 0.85440 0.80134 0.76073 0.79221 1.16966 1.20529 1.17405 1.21207 1.02643 1.02878 0.92093 0.92182 0.91983 0.94227 0.91362 0.89405 0.91235 0.92037 0.92370 0.91929 0.75281 0.92751 0.92105 0.74652 0.83121 0.83279 0.87539 0.89468 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.22 71.98 0.66 -1.77 16 2 C -0.12 -1.44 5.36 30.59 0.16 -1.28 16 3 C -0.08 -1.15 2.19 -10.80 -0.02 -1.17 16 4 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 5 C -0.12 -1.68 4.86 30.59 0.15 -1.53 16 6 C 0.08 0.84 6.69 71.98 0.48 1.32 16 7 O -0.60 -8.26 13.66 -148.98 -2.04 -10.30 16 8 C 0.12 2.69 4.83 86.38 0.42 3.10 16 9 N -0.70 -18.21 5.24 -465.94 -2.44 -20.65 16 10 C 0.56 21.29 7.77 86.80 0.67 21.96 16 11 O -0.59 -27.46 16.33 -3.87 -0.06 -27.52 16 12 C -0.11 -4.66 5.87 -20.13 -0.12 -4.78 16 13 C -0.18 -5.90 9.55 22.70 0.22 -5.69 16 14 C -0.08 -2.88 10.01 22.18 0.22 -2.66 16 15 C -0.22 -9.95 7.14 22.77 0.16 -9.78 16 16 C 0.06 3.37 5.09 -21.32 -0.11 3.26 16 17 C -0.49 -28.47 9.57 23.47 0.22 -28.25 16 18 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 19 C 0.04 2.32 5.41 85.26 0.46 2.78 16 20 N -0.85 -47.49 13.93 21.83 0.30 -47.19 16 21 Si 0.97 41.76 24.50 68.60 1.68 43.44 16 22 H -0.25 -9.52 6.71 99.48 0.67 -8.85 16 23 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 24 H -0.25 -10.92 6.84 99.48 0.68 -10.24 16 25 C -0.17 -8.43 9.34 23.01 0.21 -8.21 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.87 6.35 -2.38 -0.02 0.86 16 28 H 0.04 0.78 6.28 -2.39 -0.02 0.76 16 29 H 0.07 0.82 7.20 -2.39 -0.02 0.80 16 30 H 0.09 0.70 6.67 -2.39 -0.02 0.69 16 31 H 0.07 1.11 6.18 -2.39 -0.01 1.10 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.50 6.82 -2.39 -0.02 0.48 16 35 H 0.40 1.72 9.12 -74.05 -0.68 1.05 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.54 6.15 -2.39 -0.01 1.53 16 38 H 0.41 7.93 5.67 -92.71 -0.53 7.40 16 39 H 0.15 3.33 6.38 -2.91 -0.02 3.31 16 40 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 41 H 0.11 4.64 4.72 -2.91 -0.01 4.63 16 42 H 0.29 14.64 8.30 -92.71 -0.77 13.87 16 43 H 0.09 4.72 7.64 -2.91 -0.02 4.70 16 Total: -1.00 -72.94 341.50 1.02 -71.91 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.22 Total: 23.00 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 3.80 Total: -32.68 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: -2.14 Total: -67.84 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -2.10 Total: -37.82 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.68 Total: 43.44 kcal Total: -72.94 1.02 -71.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176305910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.991 kcal (2) G-P(sol) polarization free energy of solvation -72.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds