Wall clock time and date at job start Tue Mar 31 2020 07:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47123 * 2 1 4 4 H 1.09000 * 109.47343 * 182.22079 * 3 2 1 5 5 C 1.52996 * 109.46812 * 62.21747 * 3 2 1 6 6 C 1.53001 * 109.46984 * 65.00193 * 5 3 2 7 7 O 1.42903 * 109.47374 * 179.97438 * 6 5 3 8 8 C 1.53000 * 109.47179 * 302.22000 * 3 2 1 9 9 N 1.46504 * 109.47219 * 296.09403 * 8 3 2 10 10 C 1.34771 * 120.00023 * 182.81606 * 9 8 3 11 11 O 1.21546 * 119.99902 * 359.97438 * 10 9 8 12 12 C 1.47887 * 119.99934 * 179.97438 * 10 9 8 13 13 C 1.39916 * 120.02628 * 359.72465 * 12 10 9 14 14 C 1.38330 * 120.35991 * 179.78144 * 13 12 10 15 15 C 1.37749 * 120.40996 * 0.47775 * 14 13 12 16 16 C 1.40751 * 120.04037 * 359.77865 * 15 14 13 17 17 C 1.41440 * 120.17681 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00035 * 334.89545 * 17 16 15 19 19 C 1.39935 * 119.99666 * 154.88888 * 17 16 15 20 20 N 1.30832 * 120.00185 * 341.71176 * 19 17 16 21 21 Si 1.86802 * 119.99871 * 161.70721 * 19 17 16 22 22 H 1.48496 * 109.47046 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47265 * 120.00306 * 21 19 17 24 24 H 1.48508 * 109.46958 * 240.00173 * 21 19 17 25 25 C 1.38993 * 120.02414 * 180.02562 * 12 10 9 26 26 H 1.08999 * 109.46885 * 64.54309 * 1 2 3 27 27 H 1.09002 * 109.46487 * 184.54369 * 1 2 3 28 28 H 1.08993 * 109.46938 * 304.54070 * 1 2 3 29 29 H 1.09005 * 109.47425 * 239.99996 * 2 1 3 30 30 H 1.08997 * 109.47223 * 120.00260 * 2 1 3 31 31 H 1.08994 * 109.47348 * 305.00205 * 5 3 2 32 32 H 1.09003 * 109.47185 * 184.99683 * 5 3 2 33 33 H 1.09004 * 109.47089 * 59.99759 * 6 5 3 34 34 H 1.08994 * 109.47533 * 299.99858 * 6 5 3 35 35 H 0.96697 * 114.00682 * 180.02562 * 7 6 5 36 36 H 1.09007 * 109.46941 * 56.09249 * 8 3 2 37 37 H 1.08998 * 109.47221 * 176.09149 * 8 3 2 38 38 H 0.97003 * 119.99477 * 2.81307 * 9 8 3 39 39 H 1.08006 * 119.82003 * 0.02562 * 13 12 10 40 40 H 1.08001 * 119.79340 * 180.24143 * 14 13 12 41 41 H 1.08001 * 119.98142 * 179.76386 * 15 14 13 42 42 H 0.97003 * 119.99502 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.20594 * 359.96245 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4428 -0.0398 5 6 1.5761 2.1474 1.2762 6 6 2.2311 1.4865 2.4907 7 8 1.7983 2.1452 3.6828 8 6 1.4849 2.1798 -1.2204 9 7 2.0044 1.5612 -2.4426 10 6 1.6935 2.0821 -3.6461 11 8 0.9818 3.0648 -3.7174 12 6 2.2184 1.4581 -4.8798 13 6 3.0425 0.3303 -4.7980 14 6 3.5336 -0.2616 -5.9478 15 6 3.2253 0.2578 -7.1858 16 6 2.4021 1.3949 -7.2877 17 6 2.0842 1.9310 -8.5573 18 1 2.7454 1.7643 -9.3948 19 6 0.9128 2.6773 -8.7283 20 7 -0.0529 2.5893 -7.8500 21 14 0.7281 3.7991 -10.2105 22 1 1.9522 3.7192 -11.0473 23 1 -0.4472 3.3719 -11.0112 24 1 0.5322 5.1978 -9.7512 25 6 1.8985 1.9952 -6.1212 26 1 -0.3633 0.4417 -0.9279 27 1 -0.3632 -1.0245 0.0814 28 1 -0.3633 0.5826 0.8465 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.4922 2.0696 1.3607 32 1 1.8629 3.1982 1.2357 33 1 3.3150 1.5643 2.4062 34 1 1.9444 0.4357 2.5314 35 1 2.1751 1.7781 4.4941 36 1 0.3965 2.1197 -1.2171 37 1 1.7912 3.2252 -1.1837 38 1 2.5722 0.7768 -2.3856 39 1 3.2933 -0.0827 -3.8321 40 1 4.1658 -1.1342 -5.8741 41 1 3.6156 -0.2077 -8.0788 42 1 -0.8647 3.1069 -7.9684 43 1 1.2663 2.8681 -6.1890 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176305919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:20 Heat of formation + Delta-G solvation = -92.638193 kcal Electronic energy + Delta-G solvation = -22783.057246 eV Core-core repulsion = 19405.884192 eV Total energy + Delta-G solvation = -3377.173054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.47122 -38.18468 -37.01433 -36.30630 -33.80839 -33.26176 -30.60013 -30.26564 -29.44314 -27.69021 -25.32722 -24.52351 -23.38199 -21.86726 -20.92813 -19.64385 -19.23054 -17.89193 -17.40781 -16.33077 -16.17740 -15.47399 -15.36794 -15.03945 -14.68211 -14.23929 -14.13202 -13.84908 -13.62289 -13.20464 -12.84783 -12.59489 -12.47332 -12.39246 -12.14427 -11.90498 -11.63266 -11.58729 -11.17018 -11.08165 -10.82085 -10.80256 -10.72281 -10.59454 -10.47958 -10.12995 -10.02145 -9.68181 -9.21372 -9.00633 -8.61118 -7.62426 -7.52182 -6.80550 -4.41123 2.22026 2.80737 3.08394 3.13209 3.15074 3.58060 3.88470 3.92839 4.06676 4.54674 4.60741 4.65298 4.81154 4.94302 5.08002 5.16401 5.31465 5.43426 5.47856 5.56778 5.60099 5.67683 5.73826 5.84166 5.92400 6.01763 6.09907 6.10318 6.11411 6.26610 6.34625 6.71942 6.88760 6.99293 7.02039 7.20953 7.31305 7.38244 7.70123 7.76376 7.92426 8.10791 8.19806 8.50818 8.80520 8.83549 8.97764 10.14727 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026569 B = 0.003122 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.589625 B = 8966.275455 C = 9543.401462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.123 4.123 3 C -0.097 4.097 4 H 0.078 0.922 5 C -0.116 4.116 6 C 0.075 3.925 7 O -0.576 6.576 8 C 0.125 3.875 9 N -0.735 5.735 10 C 0.563 3.437 11 O -0.547 6.547 12 C -0.127 4.127 13 C -0.218 4.218 14 C -0.098 4.098 15 C -0.212 4.212 16 C 0.099 3.901 17 C -0.460 4.460 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.782 5.782 21 Si 0.909 3.091 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.270 1.270 25 C -0.092 4.092 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.378 0.622 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.284 0.716 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.512 -4.271 16.270 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.160 4.160 3 C -0.116 4.116 4 H 0.096 0.904 5 C -0.154 4.154 6 C -0.002 4.002 7 O -0.382 6.382 8 C 0.001 3.999 9 N -0.389 5.389 10 C 0.353 3.647 11 O -0.425 6.425 12 C -0.131 4.131 13 C -0.238 4.238 14 C -0.116 4.116 15 C -0.232 4.232 16 C 0.096 3.904 17 C -0.489 4.489 18 H 0.100 0.900 19 C -0.146 4.146 20 N -0.407 5.407 21 Si 0.733 3.267 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.195 1.195 25 C -0.112 4.112 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.225 0.775 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.234 0.766 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.399 -3.111 15.831 16.311 hybrid contribution 0.442 -0.372 -0.176 0.604 sum 2.842 -3.483 15.655 16.288 Atomic orbital electron populations 1.21907 0.95569 1.01661 1.02525 1.21609 0.96754 0.95616 1.02022 1.21336 1.00838 0.95537 0.93880 0.90354 1.21509 1.01917 1.00245 0.91703 1.22251 0.97500 0.95527 0.84948 1.86481 1.73474 1.61729 1.16477 1.21288 0.99119 0.96732 0.82807 1.45933 1.54133 1.33477 1.05395 1.18838 0.79366 0.82970 0.83505 1.90696 1.37847 1.26619 1.87330 1.19476 1.02579 0.98632 0.92369 1.20322 1.06584 1.00485 0.96429 1.20432 0.99600 0.98542 0.93033 1.21098 1.07575 0.98884 0.95645 1.17608 0.89972 0.89624 0.93148 1.19611 1.05237 1.28276 0.95806 0.90031 1.25966 0.94974 0.95742 0.97895 1.69806 1.04330 1.32563 1.33971 0.86249 0.79209 0.80159 0.81086 1.18336 1.19927 1.19538 1.21609 1.00111 1.00018 0.89501 0.91888 0.92848 0.92381 0.91523 0.91840 0.90386 0.90896 0.93729 0.93312 0.77548 0.91405 0.91794 0.76644 0.89333 0.88936 0.88626 0.90489 0.85008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.18 37.16 0.34 -1.26 16 2 C -0.12 -1.13 5.35 -26.73 -0.14 -1.28 16 3 C -0.10 -0.96 2.23 -90.62 -0.20 -1.16 16 4 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.12 -1.10 4.88 -26.73 -0.13 -1.23 16 6 C 0.08 0.60 6.80 37.16 0.25 0.86 16 7 O -0.58 -5.09 13.66 -35.23 -0.48 -5.57 16 8 C 0.12 1.72 4.78 -4.04 -0.02 1.70 16 9 N -0.74 -12.00 5.28 -61.23 -0.32 -12.32 16 10 C 0.56 12.36 7.77 -12.31 -0.10 12.26 16 11 O -0.55 -13.88 16.33 5.32 0.09 -13.80 16 12 C -0.13 -3.01 5.87 -105.04 -0.62 -3.63 16 13 C -0.22 -4.55 9.55 -38.92 -0.37 -4.92 16 14 C -0.10 -2.08 10.01 -39.73 -0.40 -2.47 16 15 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 16 C 0.10 2.63 5.56 -106.87 -0.59 2.03 16 17 C -0.46 -12.14 9.05 -37.73 -0.34 -12.48 16 18 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 19 C 0.07 1.87 5.12 -17.34 -0.09 1.78 16 20 N -0.78 -20.85 11.03 55.55 0.61 -20.24 16 21 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 22 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 C -0.09 -2.47 8.23 -38.44 -0.32 -2.79 16 26 H 0.06 0.76 6.56 -51.93 -0.34 0.42 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.54 6.16 -51.93 -0.32 0.22 16 29 H 0.07 0.65 7.11 -51.93 -0.37 0.28 16 30 H 0.06 0.49 6.46 -51.93 -0.34 0.15 16 31 H 0.08 0.78 6.15 -51.93 -0.32 0.46 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.34 6.52 -51.93 -0.34 0.00 16 35 H 0.38 1.56 9.12 45.56 0.42 1.98 16 36 H 0.07 1.00 6.28 -51.92 -0.33 0.67 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.40 5.60 5.52 -40.82 -0.23 5.38 16 39 H 0.09 1.51 6.38 -52.48 -0.33 1.18 16 40 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 42 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 43 H 0.13 3.83 5.81 -52.49 -0.30 3.53 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -31.27 346.47 -8.32 -39.59 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.31 Total: 11.29 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -3.10 Total: -18.01 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.29 Total: -32.56 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.39 Total: -19.37 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.27 -8.32 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176305919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.045 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds