Wall clock time and date at job start Tue Mar 31 2020 07:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47123 * 2 1 4 4 H 1.09000 * 109.47343 * 182.22079 * 3 2 1 5 5 C 1.52996 * 109.46812 * 62.21747 * 3 2 1 6 6 C 1.53001 * 109.46984 * 65.00193 * 5 3 2 7 7 O 1.42903 * 109.47374 * 179.97438 * 6 5 3 8 8 C 1.53000 * 109.47179 * 302.22000 * 3 2 1 9 9 N 1.46504 * 109.47219 * 296.09403 * 8 3 2 10 10 C 1.34771 * 120.00023 * 182.81606 * 9 8 3 11 11 O 1.21546 * 119.99902 * 359.97438 * 10 9 8 12 12 C 1.47887 * 119.99934 * 179.97438 * 10 9 8 13 13 C 1.39916 * 120.02628 * 359.72465 * 12 10 9 14 14 C 1.38330 * 120.35991 * 179.78144 * 13 12 10 15 15 C 1.37749 * 120.40996 * 0.47775 * 14 13 12 16 16 C 1.40751 * 120.04037 * 359.77865 * 15 14 13 17 17 C 1.41440 * 120.17681 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00035 * 334.89545 * 17 16 15 19 19 C 1.39935 * 119.99666 * 154.88888 * 17 16 15 20 20 N 1.30832 * 120.00185 * 341.71176 * 19 17 16 21 21 Si 1.86802 * 119.99871 * 161.70721 * 19 17 16 22 22 H 1.48496 * 109.47046 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47265 * 120.00306 * 21 19 17 24 24 H 1.48508 * 109.46958 * 240.00173 * 21 19 17 25 25 C 1.38993 * 120.02414 * 180.02562 * 12 10 9 26 26 H 1.08999 * 109.46885 * 64.54309 * 1 2 3 27 27 H 1.09002 * 109.46487 * 184.54369 * 1 2 3 28 28 H 1.08993 * 109.46938 * 304.54070 * 1 2 3 29 29 H 1.09005 * 109.47425 * 239.99996 * 2 1 3 30 30 H 1.08997 * 109.47223 * 120.00260 * 2 1 3 31 31 H 1.08994 * 109.47348 * 305.00205 * 5 3 2 32 32 H 1.09003 * 109.47185 * 184.99683 * 5 3 2 33 33 H 1.09004 * 109.47089 * 59.99759 * 6 5 3 34 34 H 1.08994 * 109.47533 * 299.99858 * 6 5 3 35 35 H 0.96697 * 114.00682 * 180.02562 * 7 6 5 36 36 H 1.09007 * 109.46941 * 56.09249 * 8 3 2 37 37 H 1.08998 * 109.47221 * 176.09149 * 8 3 2 38 38 H 0.97003 * 119.99477 * 2.81307 * 9 8 3 39 39 H 1.08006 * 119.82003 * 0.02562 * 13 12 10 40 40 H 1.08001 * 119.79340 * 180.24143 * 14 13 12 41 41 H 1.08001 * 119.98142 * 179.76386 * 15 14 13 42 42 H 0.97003 * 119.99502 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.20594 * 359.96245 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4428 -0.0398 5 6 1.5761 2.1474 1.2762 6 6 2.2311 1.4865 2.4907 7 8 1.7983 2.1452 3.6828 8 6 1.4849 2.1798 -1.2204 9 7 2.0044 1.5612 -2.4426 10 6 1.6935 2.0821 -3.6461 11 8 0.9818 3.0648 -3.7174 12 6 2.2184 1.4581 -4.8798 13 6 3.0425 0.3303 -4.7980 14 6 3.5336 -0.2616 -5.9478 15 6 3.2253 0.2578 -7.1858 16 6 2.4021 1.3949 -7.2877 17 6 2.0842 1.9310 -8.5573 18 1 2.7454 1.7643 -9.3948 19 6 0.9128 2.6773 -8.7283 20 7 -0.0529 2.5893 -7.8500 21 14 0.7281 3.7991 -10.2105 22 1 1.9522 3.7192 -11.0473 23 1 -0.4472 3.3719 -11.0112 24 1 0.5322 5.1978 -9.7512 25 6 1.8985 1.9952 -6.1212 26 1 -0.3633 0.4417 -0.9279 27 1 -0.3632 -1.0245 0.0814 28 1 -0.3633 0.5826 0.8465 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.4922 2.0696 1.3607 32 1 1.8629 3.1982 1.2357 33 1 3.3150 1.5643 2.4062 34 1 1.9444 0.4357 2.5314 35 1 2.1751 1.7781 4.4941 36 1 0.3965 2.1197 -1.2171 37 1 1.7912 3.2252 -1.1837 38 1 2.5722 0.7768 -2.3856 39 1 3.2933 -0.0827 -3.8321 40 1 4.1658 -1.1342 -5.8741 41 1 3.6156 -0.2077 -8.0788 42 1 -0.8647 3.1069 -7.9684 43 1 1.2663 2.8681 -6.1890 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176305919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:19 Heat of formation + Delta-G solvation = -114.367200 kcal Electronic energy + Delta-G solvation = -22783.999486 eV Core-core repulsion = 19405.884192 eV Total energy + Delta-G solvation = -3378.115295 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.02335 -39.30177 -38.61017 -37.19736 -35.63885 -34.70660 -32.05385 -31.33598 -31.27955 -28.82397 -27.16723 -25.51993 -24.50623 -23.22557 -22.74194 -21.22752 -20.22392 -19.46060 -18.31343 -17.82030 -17.20063 -17.04427 -16.72067 -16.43535 -16.29959 -15.54966 -15.27569 -15.06945 -14.85425 -14.75768 -14.36966 -14.24533 -13.60716 -13.57177 -13.38657 -13.07908 -12.95557 -12.80000 -12.70484 -12.53501 -12.30559 -12.18365 -11.90444 -11.63479 -11.56418 -11.49954 -11.37990 -11.08191 -10.79779 -10.72740 -10.12106 -9.46393 -9.38467 -8.67787 -6.38367 0.38182 1.00151 1.35721 1.46037 1.52070 2.10274 2.18744 2.24088 2.78379 3.34752 3.69499 3.72310 3.80723 4.05019 4.08252 4.24342 4.40035 4.43871 4.46066 4.54316 4.58730 4.63033 4.63933 4.74775 4.86006 4.89516 4.99292 5.08964 5.11046 5.19019 5.19555 5.30555 5.31149 5.31672 5.46684 5.51636 5.54512 5.86720 5.92537 6.04922 6.28773 6.51690 6.69547 6.87732 6.94535 6.94717 7.32169 8.29717 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026569 B = 0.003122 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.589625 B = 8966.275455 C = 9543.401462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.121 4.121 3 C -0.082 4.082 4 H 0.096 0.904 5 C -0.116 4.116 6 C 0.078 3.922 7 O -0.600 6.600 8 C 0.121 3.879 9 N -0.708 5.708 10 C 0.558 3.442 11 O -0.593 6.593 12 C -0.139 4.139 13 C -0.195 4.195 14 C -0.095 4.095 15 C -0.217 4.217 16 C 0.067 3.933 17 C -0.498 4.498 18 H 0.084 0.916 19 C 0.029 3.971 20 N -0.826 5.826 21 Si 0.982 3.018 22 H -0.250 1.250 23 H -0.264 1.264 24 H -0.271 1.271 25 C -0.132 4.132 26 H 0.034 0.966 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.413 0.587 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.109 0.891 42 H 0.286 0.714 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.503 -6.419 18.095 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.158 4.158 3 C -0.101 4.101 4 H 0.115 0.885 5 C -0.154 4.154 6 C 0.000 4.000 7 O -0.409 6.409 8 C -0.002 4.002 9 N -0.361 5.361 10 C 0.348 3.652 11 O -0.475 6.475 12 C -0.142 4.142 13 C -0.215 4.215 14 C -0.113 4.113 15 C -0.236 4.236 16 C 0.065 3.935 17 C -0.527 4.527 18 H 0.102 0.898 19 C -0.186 4.186 20 N -0.451 5.451 21 Si 0.802 3.198 22 H -0.174 1.174 23 H -0.188 1.188 24 H -0.196 1.196 25 C -0.153 4.153 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.247 0.753 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.251 0.749 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.432 -5.314 17.709 19.013 hybrid contribution -0.101 0.175 -0.532 0.569 sum 4.332 -5.139 17.177 18.445 Atomic orbital electron populations 1.21903 0.96547 1.02021 1.01265 1.21640 0.95831 0.94986 1.03324 1.21237 1.01595 0.95499 0.91779 0.88538 1.21474 1.01595 0.99848 0.92486 1.22233 0.97996 0.95825 0.83923 1.86426 1.74153 1.62576 1.17696 1.21473 0.98710 0.96770 0.83274 1.45697 1.52838 1.33096 1.04448 1.18770 0.79127 0.82610 0.84732 1.90672 1.40012 1.28722 1.88056 1.19786 1.02815 0.99526 0.92067 1.20851 1.03600 0.98235 0.98817 1.20939 0.99158 0.99425 0.91773 1.21420 1.06557 0.97984 0.97685 1.17954 0.91291 0.91030 0.93266 1.19877 1.06180 1.30461 0.96197 0.89773 1.26862 0.94222 0.96693 1.00827 1.69905 1.05007 1.33962 1.36265 0.85164 0.79630 0.77581 0.77392 1.17357 1.18828 1.19642 1.21408 1.02091 1.00352 0.91413 0.94651 0.91958 0.91923 0.91559 0.89114 0.91299 0.92027 0.92371 0.91767 0.75257 0.92577 0.92958 0.74865 0.84433 0.84181 0.87324 0.90365 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.18 71.98 0.66 -2.28 16 2 C -0.12 -1.82 5.35 30.60 0.16 -1.65 16 3 C -0.08 -1.41 2.23 -10.79 -0.02 -1.44 16 4 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 5 C -0.12 -1.97 4.88 30.59 0.15 -1.82 16 6 C 0.08 0.99 6.80 71.98 0.49 1.48 16 7 O -0.60 -9.15 13.66 -148.98 -2.04 -11.18 16 8 C 0.12 3.26 4.78 86.38 0.41 3.67 16 9 N -0.71 -22.10 5.28 -465.93 -2.46 -24.55 16 10 C 0.56 24.83 7.77 86.80 0.67 25.50 16 11 O -0.59 -31.65 16.33 -3.86 -0.06 -31.71 16 12 C -0.14 -6.59 5.87 -20.13 -0.12 -6.71 16 13 C -0.20 -7.54 9.55 22.70 0.22 -7.33 16 14 C -0.10 -3.71 10.01 22.18 0.22 -3.48 16 15 C -0.22 -10.10 9.78 22.77 0.22 -9.88 16 16 C 0.07 3.66 5.56 -21.32 -0.12 3.54 16 17 C -0.50 -27.39 9.05 23.47 0.21 -27.18 16 18 H 0.08 4.37 7.91 -2.91 -0.02 4.35 16 19 C 0.03 1.53 5.12 85.25 0.44 1.96 16 20 N -0.83 -46.82 11.03 21.82 0.24 -46.58 16 21 Si 0.98 40.22 29.60 68.60 2.03 42.25 16 22 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 23 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 C -0.13 -7.43 8.23 23.01 0.19 -7.24 16 26 H 0.03 0.84 6.56 -2.39 -0.02 0.82 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.08 6.16 -2.39 -0.01 1.07 16 29 H 0.07 1.03 7.11 -2.38 -0.02 1.01 16 30 H 0.09 0.95 6.46 -2.39 -0.02 0.93 16 31 H 0.07 1.30 6.15 -2.39 -0.01 1.28 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.63 6.52 -2.39 -0.02 0.61 16 35 H 0.40 2.23 9.12 -74.06 -0.68 1.55 16 36 H 0.06 1.68 6.28 -2.38 -0.01 1.66 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.41 10.17 5.52 -92.71 -0.51 9.66 16 39 H 0.14 3.91 6.38 -2.91 -0.02 3.90 16 40 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 41 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 42 H 0.29 14.92 8.30 -92.71 -0.77 14.15 16 43 H 0.10 5.98 5.81 -2.91 -0.02 5.97 16 Total: -1.00 -73.47 346.47 1.36 -72.12 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -0.15 Total: 32.52 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 3.79 Total: -32.86 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -2.22 Total: -71.13 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -2.10 Total: -42.90 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -73.47 1.36 -72.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176305919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.252 kcal (2) G-P(sol) polarization free energy of solvation -73.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds