Wall clock time and date at job start Tue Mar 31 2020 07:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47118 * 2 1 4 4 H 1.09007 * 109.47034 * 55.00967 * 3 2 1 5 5 C 1.53002 * 109.47509 * 295.00394 * 3 2 1 6 6 C 1.53000 * 109.47225 * 175.00274 * 3 2 1 7 7 H 1.09001 * 109.47187 * 60.00129 * 6 3 2 8 8 O 1.42899 * 109.47105 * 300.00585 * 6 3 2 9 9 C 1.52995 * 109.47398 * 180.02562 * 6 3 2 10 10 N 1.46507 * 109.47372 * 185.00112 * 9 6 3 11 11 C 1.34772 * 120.00175 * 180.02562 * 10 9 6 12 12 O 1.21553 * 119.99858 * 359.97438 * 11 10 9 13 13 C 1.47882 * 120.00187 * 179.97438 * 11 10 9 14 14 C 1.39916 * 120.02361 * 359.72473 * 13 11 10 15 15 C 1.38324 * 120.36158 * 179.78751 * 14 13 11 16 16 C 1.37763 * 120.40846 * 0.46484 * 15 14 13 17 17 C 1.40742 * 120.03954 * 359.78951 * 16 15 14 18 18 C 1.41433 * 120.18069 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99787 * 334.93582 * 18 17 16 20 20 C 1.39944 * 120.00011 * 154.93103 * 18 17 16 21 21 N 1.30822 * 120.00077 * 342.58088 * 20 18 17 22 22 Si 1.86804 * 119.99630 * 162.58262 * 20 18 17 23 23 H 1.48496 * 109.47223 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46943 * 120.00065 * 22 20 18 25 25 H 1.48496 * 109.47022 * 240.00106 * 22 20 18 26 26 C 1.38990 * 120.02555 * 179.97438 * 13 11 10 27 27 H 1.08992 * 109.47721 * 59.99200 * 1 2 3 28 28 H 1.08991 * 109.47294 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46772 * 299.99501 * 1 2 3 30 30 H 1.09005 * 109.46772 * 240.00499 * 2 1 3 31 31 H 1.08992 * 109.47325 * 120.00433 * 2 1 3 32 32 H 1.09002 * 109.46478 * 59.99903 * 5 3 2 33 33 H 1.09002 * 109.47183 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.46904 * 299.99871 * 5 3 2 35 35 H 0.96706 * 113.99857 * 299.99496 * 8 6 3 36 36 H 1.09002 * 109.47139 * 304.99998 * 9 6 3 37 37 H 1.09005 * 109.47070 * 65.00103 * 9 6 3 38 38 H 0.96999 * 119.99567 * 359.97438 * 10 9 6 39 39 H 1.08005 * 119.82034 * 359.97438 * 14 13 11 40 40 H 1.07999 * 119.79797 * 180.23433 * 15 14 13 41 41 H 1.07997 * 119.97563 * 179.76563 * 16 15 14 42 42 H 0.96995 * 119.99556 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.20703 * 359.95504 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8420 5 6 1.6352 2.1267 -1.3073 6 6 3.5648 1.4444 0.1257 7 1 3.9994 0.9054 -0.7162 8 8 3.9429 0.8053 1.3466 9 6 4.0748 2.8868 0.1263 10 7 5.5399 2.8869 0.1262 11 6 6.2137 4.0541 0.1272 12 8 5.6059 5.1067 0.1278 13 6 7.6925 4.0541 0.1277 14 6 8.3927 2.8428 0.1329 15 6 9.7759 2.8346 0.1290 16 6 10.4801 4.0187 0.1295 17 6 9.7932 5.2470 0.1296 18 6 10.5132 6.4644 0.1307 19 1 11.5171 6.4976 0.5277 20 6 9.9249 7.6257 -0.3826 21 7 8.8760 7.5392 -1.1597 22 14 10.6375 9.2996 0.0417 23 1 11.8145 9.1257 0.9302 24 1 11.0564 9.9896 -1.2048 25 1 9.6083 10.1140 0.7364 26 6 8.3879 5.2575 0.1282 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 0.5488 2.1253 -1.3967 33 1 1.9982 3.1545 -1.3070 34 1 2.0698 1.5877 -2.1491 35 1 3.5908 1.2325 2.1395 36 1 3.7114 3.4011 -0.7634 37 1 3.7115 3.4002 1.0166 38 1 6.0248 2.0468 0.1262 39 1 7.8501 1.9089 0.1370 40 1 10.3071 1.8943 0.1292 41 1 11.5600 4.0042 0.1302 42 1 8.4681 8.3442 -1.5151 43 1 7.8517 6.1950 0.1276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177887042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:51 Heat of formation + Delta-G solvation = -95.256871 kcal Electronic energy + Delta-G solvation = -22759.699685 eV Core-core repulsion = 19382.413076 eV Total energy + Delta-G solvation = -3377.286609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.53905 -38.45127 -36.92564 -35.18046 -34.01412 -33.62237 -30.96446 -30.00557 -29.41731 -27.45544 -25.53324 -25.12353 -22.76531 -21.71769 -20.88668 -20.60311 -19.40610 -17.78321 -16.99367 -16.25877 -15.84097 -15.38444 -15.11423 -14.87807 -14.64774 -14.23250 -14.00101 -13.98869 -13.51302 -13.15061 -13.06398 -12.64263 -12.48896 -12.44327 -12.00446 -11.94834 -11.74511 -11.62744 -11.37079 -11.15390 -11.06673 -10.88629 -10.72528 -10.65487 -10.48005 -10.05553 -10.00458 -9.66685 -9.21358 -8.99787 -8.64251 -7.61257 -7.50230 -6.78838 -4.40209 2.22463 2.81778 3.08556 3.13511 3.15688 3.60301 3.87801 3.93158 4.22382 4.41600 4.60156 4.65543 4.68505 4.96715 5.03641 5.21480 5.25814 5.29973 5.43086 5.57723 5.61736 5.69357 5.72822 5.79983 5.81739 5.86832 5.95854 6.11160 6.13234 6.16663 6.30421 6.73232 6.86349 7.00211 7.03340 7.22527 7.39777 7.45432 7.72012 7.77817 7.94198 8.11785 8.20896 8.52082 8.81664 8.84801 8.96721 10.16096 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027104 B = 0.003121 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.797081 B = 8970.500665 C = 9743.961214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.119 4.119 4 H 0.075 0.925 5 C -0.155 4.155 6 C 0.100 3.900 7 H 0.104 0.896 8 O -0.556 6.556 9 C 0.088 3.912 10 N -0.732 5.732 11 C 0.563 3.437 12 O -0.549 6.549 13 C -0.128 4.128 14 C -0.216 4.216 15 C -0.098 4.098 16 C -0.211 4.211 17 C 0.098 3.902 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.784 5.784 22 Si 0.910 3.090 23 H -0.260 1.260 24 H -0.274 1.274 25 H -0.271 1.271 26 C -0.092 4.092 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.375 0.625 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.402 0.598 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.284 0.716 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.913 -10.911 1.408 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.138 4.138 4 H 0.093 0.907 5 C -0.212 4.212 6 C 0.040 3.960 7 H 0.122 0.878 8 O -0.361 6.361 9 C -0.037 4.037 10 N -0.386 5.386 11 C 0.354 3.646 12 O -0.428 6.428 13 C -0.132 4.132 14 C -0.236 4.236 15 C -0.117 4.117 16 C -0.231 4.231 17 C 0.095 3.905 18 C -0.489 4.489 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.409 5.409 22 Si 0.734 3.266 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.196 1.196 26 C -0.112 4.112 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.223 0.777 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.238 0.762 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.217 -10.399 0.842 16.839 hybrid contribution 0.139 0.740 0.358 0.834 sum -13.078 -9.659 1.200 16.302 Atomic orbital electron populations 1.21829 0.95999 1.01474 1.01819 1.21491 0.95516 0.95631 1.02669 1.21800 0.95220 0.97309 0.99515 0.90679 1.21956 1.01706 1.00962 0.96577 1.22235 0.93478 0.92150 0.88116 0.87809 1.86587 1.77091 1.56873 1.15589 1.22037 0.81994 0.96831 1.02813 1.45853 1.05825 1.09462 1.77462 1.18867 0.88502 0.82691 0.74584 1.90690 1.70458 1.31454 1.50169 1.19466 0.90031 0.95315 1.08344 1.20367 0.94100 0.94732 1.14366 1.20446 0.93640 0.96653 1.00940 1.21108 0.97945 0.92424 1.11604 1.17611 0.91535 0.92533 0.88791 1.19610 1.01475 0.92303 1.35532 0.90052 1.25966 0.94306 1.01642 0.92695 1.69798 1.17986 1.31637 1.21466 0.86240 0.80026 0.81078 0.79289 1.18344 1.19935 1.19581 1.21635 0.94127 0.96217 0.99242 0.92553 0.92889 0.92875 0.92007 0.91160 0.92085 0.91818 0.92328 0.77734 0.90662 0.91779 0.76158 0.89143 0.88873 0.88605 0.90539 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.67 37.16 0.36 -0.69 16 2 C -0.12 -0.89 5.33 -26.73 -0.14 -1.04 16 3 C -0.12 -0.98 2.16 -90.62 -0.20 -1.18 16 4 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 5 C -0.15 -1.29 8.60 37.16 0.32 -0.97 16 6 C 0.10 1.01 2.58 -26.73 -0.07 0.94 16 7 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 8 O -0.56 -5.81 12.52 -35.23 -0.44 -6.26 16 9 C 0.09 1.18 5.10 -4.04 -0.02 1.16 16 10 N -0.73 -12.29 5.45 -61.23 -0.33 -12.62 16 11 C 0.56 12.50 7.77 -12.31 -0.10 12.40 16 12 O -0.55 -13.91 16.33 5.32 0.09 -13.82 16 13 C -0.13 -3.08 5.87 -105.04 -0.62 -3.70 16 14 C -0.22 -4.63 9.55 -38.92 -0.37 -5.00 16 15 C -0.10 -2.14 10.01 -39.72 -0.40 -2.53 16 16 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 17 C 0.10 2.62 5.57 -106.87 -0.59 2.02 16 18 C -0.46 -12.19 9.05 -37.73 -0.34 -12.53 16 19 H 0.08 2.05 7.90 -52.49 -0.41 1.63 16 20 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 21 N -0.78 -20.95 10.97 55.55 0.61 -20.34 16 22 Si 0.91 18.90 29.59 -169.99 -5.03 13.87 16 23 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 C -0.09 -2.49 8.23 -38.44 -0.32 -2.80 16 27 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.58 7.54 -51.93 -0.39 0.19 16 32 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 33 H 0.06 0.59 6.32 -51.93 -0.33 0.26 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.38 2.90 9.05 45.56 0.41 3.32 16 36 H 0.08 1.05 6.18 -51.93 -0.32 0.73 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.40 6.16 6.49 -40.82 -0.26 5.90 16 39 H 0.09 1.63 6.38 -52.48 -0.33 1.30 16 40 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 42 H 0.28 6.93 8.30 -40.82 -0.34 6.60 16 43 H 0.13 3.88 5.76 -52.49 -0.30 3.58 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -30.50 350.75 -8.34 -38.84 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -5.57 Total: 12.64 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -2.95 Total: -17.60 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.28 Total: -32.97 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.35 Total: -20.08 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.50 -8.34 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177887042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.418 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds