Wall clock time and date at job start Tue Mar 31 2020 07:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47118 * 2 1 4 4 H 1.09007 * 109.47034 * 55.00967 * 3 2 1 5 5 C 1.53002 * 109.47509 * 295.00394 * 3 2 1 6 6 C 1.53000 * 109.47225 * 175.00274 * 3 2 1 7 7 H 1.09001 * 109.47187 * 60.00129 * 6 3 2 8 8 O 1.42899 * 109.47105 * 300.00585 * 6 3 2 9 9 C 1.52995 * 109.47398 * 180.02562 * 6 3 2 10 10 N 1.46507 * 109.47372 * 185.00112 * 9 6 3 11 11 C 1.34772 * 120.00175 * 180.02562 * 10 9 6 12 12 O 1.21553 * 119.99858 * 359.97438 * 11 10 9 13 13 C 1.47882 * 120.00187 * 179.97438 * 11 10 9 14 14 C 1.39916 * 120.02361 * 359.72473 * 13 11 10 15 15 C 1.38324 * 120.36158 * 179.78751 * 14 13 11 16 16 C 1.37763 * 120.40846 * 0.46484 * 15 14 13 17 17 C 1.40742 * 120.03954 * 359.78951 * 16 15 14 18 18 C 1.41433 * 120.18069 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99787 * 334.93582 * 18 17 16 20 20 C 1.39944 * 120.00011 * 154.93103 * 18 17 16 21 21 N 1.30822 * 120.00077 * 342.58088 * 20 18 17 22 22 Si 1.86804 * 119.99630 * 162.58262 * 20 18 17 23 23 H 1.48496 * 109.47223 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46943 * 120.00065 * 22 20 18 25 25 H 1.48496 * 109.47022 * 240.00106 * 22 20 18 26 26 C 1.38990 * 120.02555 * 179.97438 * 13 11 10 27 27 H 1.08992 * 109.47721 * 59.99200 * 1 2 3 28 28 H 1.08991 * 109.47294 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46772 * 299.99501 * 1 2 3 30 30 H 1.09005 * 109.46772 * 240.00499 * 2 1 3 31 31 H 1.08992 * 109.47325 * 120.00433 * 2 1 3 32 32 H 1.09002 * 109.46478 * 59.99903 * 5 3 2 33 33 H 1.09002 * 109.47183 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.46904 * 299.99871 * 5 3 2 35 35 H 0.96706 * 113.99857 * 299.99496 * 8 6 3 36 36 H 1.09002 * 109.47139 * 304.99998 * 9 6 3 37 37 H 1.09005 * 109.47070 * 65.00103 * 9 6 3 38 38 H 0.96999 * 119.99567 * 359.97438 * 10 9 6 39 39 H 1.08005 * 119.82034 * 359.97438 * 14 13 11 40 40 H 1.07999 * 119.79797 * 180.23433 * 15 14 13 41 41 H 1.07997 * 119.97563 * 179.76563 * 16 15 14 42 42 H 0.96995 * 119.99556 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.20703 * 359.95504 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8420 5 6 1.6352 2.1267 -1.3073 6 6 3.5648 1.4444 0.1257 7 1 3.9994 0.9054 -0.7162 8 8 3.9429 0.8053 1.3466 9 6 4.0748 2.8868 0.1263 10 7 5.5399 2.8869 0.1262 11 6 6.2137 4.0541 0.1272 12 8 5.6059 5.1067 0.1278 13 6 7.6925 4.0541 0.1277 14 6 8.3927 2.8428 0.1329 15 6 9.7759 2.8346 0.1290 16 6 10.4801 4.0187 0.1295 17 6 9.7932 5.2470 0.1296 18 6 10.5132 6.4644 0.1307 19 1 11.5171 6.4976 0.5277 20 6 9.9249 7.6257 -0.3826 21 7 8.8760 7.5392 -1.1597 22 14 10.6375 9.2996 0.0417 23 1 11.8145 9.1257 0.9302 24 1 11.0564 9.9896 -1.2048 25 1 9.6083 10.1140 0.7364 26 6 8.3879 5.2575 0.1282 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 0.5488 2.1253 -1.3967 33 1 1.9982 3.1545 -1.3070 34 1 2.0698 1.5877 -2.1491 35 1 3.5908 1.2325 2.1395 36 1 3.7114 3.4011 -0.7634 37 1 3.7115 3.4002 1.0166 38 1 6.0248 2.0468 0.1262 39 1 7.8501 1.9089 0.1370 40 1 10.3071 1.8943 0.1292 41 1 11.5600 4.0042 0.1302 42 1 8.4681 8.3442 -1.5151 43 1 7.8517 6.1950 0.1276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177887042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:50 Heat of formation + Delta-G solvation = -115.740651 kcal Electronic energy + Delta-G solvation = -22760.587928 eV Core-core repulsion = 19382.413076 eV Total energy + Delta-G solvation = -3378.174852 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.02529 -39.59871 -38.69718 -35.97280 -35.66281 -35.24054 -32.33021 -31.35188 -31.17721 -28.51264 -27.17872 -26.17969 -24.18022 -22.98292 -22.62535 -21.52304 -20.89368 -19.53905 -18.23144 -17.58352 -17.17284 -16.92239 -16.51806 -16.25202 -15.98038 -15.48657 -15.31467 -15.09042 -14.86839 -14.58545 -14.31630 -14.21487 -13.91358 -13.50886 -13.32237 -12.98449 -12.81550 -12.77545 -12.58046 -12.54352 -12.43212 -12.19723 -12.11300 -11.90508 -11.51348 -11.49709 -11.35242 -11.09092 -11.03711 -10.63360 -10.15247 -9.47416 -9.39195 -8.67046 -6.38839 0.36876 0.99564 1.36140 1.46099 1.52557 2.08767 2.18969 2.21506 2.78029 3.41676 3.57296 3.69129 3.82360 3.95778 4.05959 4.18964 4.26235 4.41579 4.52074 4.58008 4.60518 4.65905 4.70701 4.81641 4.89604 4.94125 5.08482 5.09795 5.16306 5.18219 5.18839 5.27079 5.30716 5.42587 5.48831 5.51635 5.56427 5.85866 5.92018 6.04559 6.27756 6.49953 6.66512 6.76797 6.87434 6.93812 7.29409 8.30158 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027104 B = 0.003121 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.797081 B = 8970.500665 C = 9743.961214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.112 4.112 4 H 0.081 0.919 5 C -0.156 4.156 6 C 0.114 3.886 7 H 0.107 0.893 8 O -0.564 6.564 9 C 0.084 3.916 10 N -0.708 5.708 11 C 0.558 3.442 12 O -0.591 6.591 13 C -0.140 4.140 14 C -0.197 4.197 15 C -0.096 4.096 16 C -0.216 4.216 17 C 0.066 3.934 18 C -0.497 4.497 19 H 0.084 0.916 20 C 0.028 3.972 21 N -0.826 5.826 22 Si 0.984 3.016 23 H -0.251 1.251 24 H -0.264 1.264 25 H -0.270 1.270 26 C -0.131 4.131 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.388 0.612 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.413 0.587 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.286 0.714 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.246 -13.230 1.766 18.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.131 4.131 4 H 0.099 0.901 5 C -0.213 4.213 6 C 0.054 3.946 7 H 0.125 0.875 8 O -0.371 6.371 9 C -0.040 4.040 10 N -0.361 5.361 11 C 0.348 3.652 12 O -0.473 6.473 13 C -0.143 4.143 14 C -0.217 4.217 15 C -0.114 4.114 16 C -0.236 4.236 17 C 0.064 3.936 18 C -0.526 4.526 19 H 0.102 0.898 20 C -0.187 4.187 21 N -0.452 5.452 22 Si 0.804 3.196 23 H -0.174 1.174 24 H -0.188 1.188 25 H -0.195 1.195 26 C -0.151 4.151 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.237 0.763 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.251 0.749 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.560 -12.785 1.210 18.676 hybrid contribution 0.172 1.235 0.264 1.275 sum -13.388 -11.550 1.474 17.743 Atomic orbital electron populations 1.21820 0.95220 1.01938 1.02046 1.21447 0.96149 0.94803 1.02488 1.21740 0.93667 0.97998 0.99718 0.90089 1.21962 1.02481 1.00124 0.96701 1.22114 0.94593 0.89517 0.88331 0.87541 1.86563 1.77438 1.57001 1.16139 1.22309 0.79605 0.99476 1.02564 1.45675 1.07340 1.08061 1.75021 1.18750 0.88094 0.83562 0.74769 1.90666 1.70965 1.33271 1.52370 1.19786 0.91425 0.95451 1.07621 1.20843 0.94477 0.95235 1.11105 1.20931 0.93884 0.97588 0.98996 1.21418 0.98892 0.92483 1.10805 1.17967 0.91816 0.94011 0.89828 1.19882 1.02030 0.93477 1.37203 0.89771 1.26875 0.94456 1.05392 0.91933 1.69895 1.19691 1.32682 1.22911 0.85139 0.79256 0.75892 0.79324 1.17419 1.18830 1.19542 1.21444 0.94596 0.96227 1.02868 0.92331 0.92355 0.92662 0.92069 0.91447 0.90968 0.93157 0.92135 0.76308 0.91163 0.91926 0.74929 0.84858 0.84357 0.87261 0.90321 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.67 71.98 0.70 -1.03 16 2 C -0.11 -1.45 5.33 30.59 0.16 -1.29 16 3 C -0.11 -1.61 2.16 -10.79 -0.02 -1.63 16 4 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 5 C -0.16 -2.33 8.60 71.98 0.62 -1.71 16 6 C 0.11 2.05 2.58 30.59 0.08 2.13 16 7 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 8 O -0.56 -10.22 12.52 -148.98 -1.87 -12.09 16 9 C 0.08 2.15 5.10 86.38 0.44 2.59 16 10 N -0.71 -22.74 5.45 -465.92 -2.54 -25.28 16 11 C 0.56 24.97 7.77 86.80 0.67 25.64 16 12 O -0.59 -31.06 16.33 -3.88 -0.06 -31.13 16 13 C -0.14 -6.74 5.87 -20.14 -0.12 -6.86 16 14 C -0.20 -7.93 9.55 22.70 0.22 -7.72 16 15 C -0.10 -3.88 10.01 22.18 0.22 -3.66 16 16 C -0.22 -10.24 9.78 22.77 0.22 -10.02 16 17 C 0.07 3.64 5.57 -21.32 -0.12 3.52 16 18 C -0.50 -27.35 9.05 23.47 0.21 -27.14 16 19 H 0.08 4.37 7.90 -2.91 -0.02 4.35 16 20 C 0.03 1.49 5.14 85.26 0.44 1.93 16 21 N -0.83 -46.59 10.97 21.83 0.24 -46.35 16 22 Si 0.98 40.01 29.59 68.60 2.03 42.04 16 23 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 24 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 C -0.13 -7.39 8.23 23.01 0.19 -7.20 16 27 H 0.06 0.64 6.56 -2.39 -0.02 0.62 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.07 0.94 7.54 -2.39 -0.02 0.92 16 32 H 0.07 0.92 6.56 -2.39 -0.02 0.91 16 33 H 0.05 0.89 6.32 -2.39 -0.02 0.88 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.39 4.98 9.05 -74.05 -0.67 4.31 16 36 H 0.07 1.93 6.18 -2.39 -0.01 1.92 16 37 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.41 11.40 6.49 -92.71 -0.60 10.80 16 39 H 0.13 4.18 6.38 -2.91 -0.02 4.16 16 40 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 41 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.29 14.82 8.30 -92.71 -0.77 14.05 16 43 H 0.10 6.19 5.76 -2.91 -0.02 6.17 16 Total: -1.00 -69.72 350.75 1.47 -68.25 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: -0.24 Total: 36.99 kcal Atomic # 6 Polarization: -36.34 SS G_CDS: 3.91 Total: -32.43 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -2.30 Total: -71.63 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -1.93 Total: -43.21 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -69.72 1.47 -68.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177887042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.492 kcal (2) G-P(sol) polarization free energy of solvation -69.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds