Wall clock time and date at job start Tue Mar 31 2020 07:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46912 * 2 1 4 4 H 1.09001 * 109.47013 * 54.99701 * 3 2 1 5 5 C 1.53000 * 109.47109 * 295.00340 * 3 2 1 6 6 C 1.53001 * 109.47405 * 174.99952 * 3 2 1 7 7 H 1.08996 * 109.47401 * 305.00166 * 6 3 2 8 8 O 1.42902 * 109.46639 * 64.99862 * 6 3 2 9 9 C 1.53001 * 109.47310 * 184.99746 * 6 3 2 10 10 N 1.46498 * 109.47170 * 179.97438 * 9 6 3 11 11 C 1.34767 * 119.99949 * 180.02562 * 10 9 6 12 12 O 1.21547 * 120.00218 * 0.02562 * 11 10 9 13 13 C 1.47891 * 119.99842 * 180.02562 * 11 10 9 14 14 C 1.39918 * 120.02691 * 359.72382 * 13 11 10 15 15 C 1.38322 * 120.35874 * 180.25818 * 14 13 11 16 16 C 1.37758 * 120.41597 * 0.03783 * 15 14 13 17 17 C 1.40751 * 120.03614 * 359.96275 * 16 15 14 18 18 C 1.41435 * 120.17866 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99545 * 334.92938 * 18 17 16 20 20 C 1.39935 * 120.00365 * 154.92772 * 18 17 16 21 21 N 1.30825 * 119.99735 * 342.58131 * 20 18 17 22 22 Si 1.86796 * 120.00048 * 162.58545 * 20 18 17 23 23 H 1.48506 * 109.47332 * 90.00016 * 22 20 18 24 24 H 1.48506 * 109.47024 * 209.99844 * 22 20 18 25 25 H 1.48497 * 109.47242 * 329.99643 * 22 20 18 26 26 C 1.39002 * 120.02325 * 179.97438 * 13 11 10 27 27 H 1.08998 * 109.47203 * 300.00118 * 1 2 3 28 28 H 1.08997 * 109.46869 * 60.00144 * 1 2 3 29 29 H 1.08997 * 109.46560 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47468 * 240.00618 * 2 1 3 31 31 H 1.09002 * 109.47451 * 119.99461 * 2 1 3 32 32 H 1.08994 * 109.47692 * 59.99342 * 5 3 2 33 33 H 1.09001 * 109.47401 * 180.02562 * 5 3 2 34 34 H 1.09008 * 109.47026 * 299.99407 * 5 3 2 35 35 H 0.96697 * 114.00115 * 60.00684 * 8 6 3 36 36 H 1.09000 * 109.46871 * 60.00160 * 9 6 3 37 37 H 1.08996 * 109.47232 * 300.00524 * 9 6 3 38 38 H 0.96996 * 119.99901 * 0.02562 * 10 9 6 39 39 H 1.07999 * 119.81904 * 0.27376 * 14 13 11 40 40 H 1.08004 * 119.79534 * 180.02562 * 15 14 13 41 41 H 1.07992 * 119.98059 * 179.97438 * 16 15 14 42 42 H 0.96995 * 120.00017 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.19934 * 359.70720 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4445 0.1257 7 1 3.8571 0.8802 1.0113 8 8 4.1391 0.8404 -1.0350 9 6 4.0644 2.8852 0.2511 10 7 5.5244 2.8870 0.3721 11 6 6.1888 4.0530 0.4956 12 8 5.5768 5.1030 0.5070 13 6 7.6627 4.0548 0.6172 14 6 8.3674 2.8460 0.6098 15 6 9.7455 2.8395 0.7285 16 6 10.4402 4.0222 0.8559 17 6 9.7485 5.2480 0.8654 18 6 10.4588 6.4641 0.9955 19 1 11.4249 6.4762 1.4783 20 6 9.9099 7.6517 0.4989 21 7 8.9317 7.6074 -0.3687 22 14 10.5740 9.2999 1.0746 23 1 11.6791 9.7283 0.1799 24 1 9.4873 10.3115 1.0381 25 1 11.0833 9.1706 2.4635 26 6 8.3486 5.2571 0.7440 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 0.5489 2.1252 -1.3970 33 1 1.9988 3.1541 -1.3076 34 1 2.0698 1.5876 -2.1492 35 1 3.9205 1.2913 -1.8620 36 1 3.6262 3.3459 1.1364 37 1 3.7721 3.4495 -0.6345 38 1 6.0128 2.0490 0.3633 39 1 7.8324 1.9131 0.5108 40 1 10.2803 1.9011 0.7213 41 1 11.5160 4.0088 0.9485 42 1 8.5510 8.4305 -0.7127 43 1 7.8089 6.1925 0.7495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177887072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:56 Heat of formation + Delta-G solvation = -94.675904 kcal Electronic energy + Delta-G solvation = -22798.061289 eV Core-core repulsion = 19420.799873 eV Total energy + Delta-G solvation = -3377.261416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.59596 -38.53700 -36.93029 -34.97404 -33.97277 -33.60775 -30.79514 -29.95917 -29.41504 -27.91384 -25.64362 -25.12701 -22.75437 -21.66315 -20.87894 -20.30218 -19.36833 -17.78099 -17.03050 -16.23739 -15.95040 -15.48010 -15.17712 -14.88540 -14.65948 -14.31721 -14.03843 -13.97359 -13.49930 -13.15828 -12.82017 -12.62902 -12.47135 -12.36634 -12.25510 -11.94061 -11.71006 -11.61317 -11.30518 -11.13625 -11.05340 -10.91222 -10.74456 -10.68863 -10.48161 -10.05355 -10.01732 -9.66971 -9.20032 -8.99656 -8.64291 -7.60932 -7.49880 -6.78556 -4.39932 2.22896 2.82708 3.08367 3.11392 3.17377 3.59689 3.88018 3.93438 4.28847 4.44732 4.57690 4.62764 4.65877 4.95203 5.01426 5.18379 5.23051 5.29375 5.44558 5.59768 5.62083 5.66642 5.71856 5.77785 5.80845 5.83514 5.94654 6.10872 6.11995 6.15429 6.31026 6.73531 6.86741 7.00317 7.03716 7.22772 7.40015 7.46532 7.72372 7.78138 7.94505 8.12308 8.21279 8.52097 8.81781 8.85061 8.97144 10.16359 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027609 B = 0.003115 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.913531 B = 8986.450375 C = 9743.476115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.121 4.121 4 H 0.081 0.919 5 C -0.160 4.160 6 C 0.100 3.900 7 H 0.104 0.896 8 O -0.556 6.556 9 C 0.088 3.912 10 N -0.731 5.731 11 C 0.563 3.437 12 O -0.549 6.549 13 C -0.128 4.128 14 C -0.216 4.216 15 C -0.098 4.098 16 C -0.211 4.211 17 C 0.098 3.902 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.785 5.785 22 Si 0.909 3.091 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.260 1.260 26 C -0.092 4.092 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.375 0.625 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.403 0.597 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.284 0.716 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.922 -10.992 -0.665 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.140 4.140 4 H 0.099 0.901 5 C -0.217 4.217 6 C 0.041 3.959 7 H 0.122 0.878 8 O -0.362 6.362 9 C -0.037 4.037 10 N -0.386 5.386 11 C 0.353 3.647 12 O -0.428 6.428 13 C -0.132 4.132 14 C -0.236 4.236 15 C -0.117 4.117 16 C -0.231 4.231 17 C 0.096 3.904 18 C -0.489 4.489 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.409 5.409 22 Si 0.734 3.266 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.184 1.184 26 C -0.112 4.112 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.223 0.777 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.239 0.761 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.295 -10.482 -0.374 16.934 hybrid contribution 0.195 0.750 -0.254 0.815 sum -13.100 -9.733 -0.628 16.332 Atomic orbital electron populations 1.21838 0.96002 1.01482 1.01839 1.21485 0.95494 0.95615 1.02575 1.21781 0.95393 0.97310 0.99522 0.90070 1.21982 1.02077 1.00763 0.96855 1.22223 0.91624 0.92557 0.89542 0.87808 1.86568 1.75859 1.56992 1.16777 1.21991 0.82207 0.96879 1.02573 1.45836 1.06333 1.09738 1.76677 1.18868 0.88440 0.82650 0.74696 1.90688 1.69937 1.31586 1.50576 1.19472 0.90145 0.95329 1.08206 1.20369 0.94267 0.94788 1.14143 1.20444 0.93712 0.96653 1.00868 1.21108 0.97879 0.92639 1.11477 1.17602 0.91406 0.92543 0.88895 1.19568 1.04589 0.91259 1.33531 0.90108 1.25961 0.94117 1.01627 0.92887 1.69789 1.20273 1.30801 1.20036 0.86291 0.79271 0.80657 0.80427 1.19449 1.19977 1.18394 1.21633 0.94039 0.96152 0.99410 0.92848 0.92540 0.92890 0.91338 0.92008 0.91872 0.91930 0.92325 0.77689 0.91188 0.91415 0.76070 0.89119 0.88877 0.88611 0.90487 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.67 37.16 0.36 -0.68 16 2 C -0.11 -0.88 5.25 -26.73 -0.14 -1.02 16 3 C -0.12 -0.99 2.22 -90.62 -0.20 -1.19 16 4 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.16 -1.24 8.28 37.16 0.31 -0.93 16 6 C 0.10 1.01 2.80 -26.73 -0.07 0.94 16 7 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 8 O -0.56 -5.98 12.61 -35.23 -0.44 -6.43 16 9 C 0.09 1.18 5.09 -4.04 -0.02 1.16 16 10 N -0.73 -12.28 5.40 -61.24 -0.33 -12.61 16 11 C 0.56 12.50 7.77 -12.31 -0.10 12.40 16 12 O -0.55 -13.92 16.33 5.32 0.09 -13.83 16 13 C -0.13 -3.08 5.87 -105.03 -0.62 -3.70 16 14 C -0.22 -4.63 9.55 -38.92 -0.37 -5.00 16 15 C -0.10 -2.14 10.01 -39.73 -0.40 -2.53 16 16 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 17 C 0.10 2.62 5.57 -106.87 -0.59 2.03 16 18 C -0.46 -12.20 9.05 -37.73 -0.34 -12.55 16 19 H 0.08 2.03 7.90 -52.48 -0.41 1.61 16 20 C 0.07 1.86 5.14 -17.35 -0.09 1.77 16 21 N -0.78 -20.97 10.97 55.55 0.61 -20.36 16 22 Si 0.91 18.90 29.59 -169.99 -5.03 13.87 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 26 C -0.09 -2.49 8.23 -38.44 -0.32 -2.81 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.56 7.96 -51.93 -0.41 0.15 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 33 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 34 H 0.06 0.41 6.72 -51.92 -0.35 0.07 16 35 H 0.37 3.28 7.19 45.56 0.33 3.61 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.94 6.56 -51.93 -0.34 0.60 16 38 H 0.40 6.19 6.37 -40.82 -0.26 5.93 16 39 H 0.09 1.64 6.38 -52.49 -0.33 1.31 16 40 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 41 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 42 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 43 H 0.13 3.88 5.76 -52.49 -0.30 3.58 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -30.34 348.30 -8.46 -38.80 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -5.63 Total: 12.88 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.97 Total: -17.56 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.28 Total: -32.98 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.36 Total: -20.26 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.34 -8.46 -38.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177887072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.874 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds