Wall clock time and date at job start Tue Mar 31 2020 07:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46912 * 2 1 4 4 H 1.09001 * 109.47013 * 54.99701 * 3 2 1 5 5 C 1.53000 * 109.47109 * 295.00340 * 3 2 1 6 6 C 1.53001 * 109.47405 * 174.99952 * 3 2 1 7 7 H 1.08996 * 109.47401 * 305.00166 * 6 3 2 8 8 O 1.42902 * 109.46639 * 64.99862 * 6 3 2 9 9 C 1.53001 * 109.47310 * 184.99746 * 6 3 2 10 10 N 1.46498 * 109.47170 * 179.97438 * 9 6 3 11 11 C 1.34767 * 119.99949 * 180.02562 * 10 9 6 12 12 O 1.21547 * 120.00218 * 0.02562 * 11 10 9 13 13 C 1.47891 * 119.99842 * 180.02562 * 11 10 9 14 14 C 1.39918 * 120.02691 * 359.72382 * 13 11 10 15 15 C 1.38322 * 120.35874 * 180.25818 * 14 13 11 16 16 C 1.37758 * 120.41597 * 0.03783 * 15 14 13 17 17 C 1.40751 * 120.03614 * 359.96275 * 16 15 14 18 18 C 1.41435 * 120.17866 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99545 * 334.92938 * 18 17 16 20 20 C 1.39935 * 120.00365 * 154.92772 * 18 17 16 21 21 N 1.30825 * 119.99735 * 342.58131 * 20 18 17 22 22 Si 1.86796 * 120.00048 * 162.58545 * 20 18 17 23 23 H 1.48506 * 109.47332 * 90.00016 * 22 20 18 24 24 H 1.48506 * 109.47024 * 209.99844 * 22 20 18 25 25 H 1.48497 * 109.47242 * 329.99643 * 22 20 18 26 26 C 1.39002 * 120.02325 * 179.97438 * 13 11 10 27 27 H 1.08998 * 109.47203 * 300.00118 * 1 2 3 28 28 H 1.08997 * 109.46869 * 60.00144 * 1 2 3 29 29 H 1.08997 * 109.46560 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47468 * 240.00618 * 2 1 3 31 31 H 1.09002 * 109.47451 * 119.99461 * 2 1 3 32 32 H 1.08994 * 109.47692 * 59.99342 * 5 3 2 33 33 H 1.09001 * 109.47401 * 180.02562 * 5 3 2 34 34 H 1.09008 * 109.47026 * 299.99407 * 5 3 2 35 35 H 0.96697 * 114.00115 * 60.00684 * 8 6 3 36 36 H 1.09000 * 109.46871 * 60.00160 * 9 6 3 37 37 H 1.08996 * 109.47232 * 300.00524 * 9 6 3 38 38 H 0.96996 * 119.99901 * 0.02562 * 10 9 6 39 39 H 1.07999 * 119.81904 * 0.27376 * 14 13 11 40 40 H 1.08004 * 119.79534 * 180.02562 * 15 14 13 41 41 H 1.07992 * 119.98059 * 179.97438 * 16 15 14 42 42 H 0.96995 * 120.00017 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.19934 * 359.70720 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4445 0.1257 7 1 3.8571 0.8802 1.0113 8 8 4.1391 0.8404 -1.0350 9 6 4.0644 2.8852 0.2511 10 7 5.5244 2.8870 0.3721 11 6 6.1888 4.0530 0.4956 12 8 5.5768 5.1030 0.5070 13 6 7.6627 4.0548 0.6172 14 6 8.3674 2.8460 0.6098 15 6 9.7455 2.8395 0.7285 16 6 10.4402 4.0222 0.8559 17 6 9.7485 5.2480 0.8654 18 6 10.4588 6.4641 0.9955 19 1 11.4249 6.4762 1.4783 20 6 9.9099 7.6517 0.4989 21 7 8.9317 7.6074 -0.3687 22 14 10.5740 9.2999 1.0746 23 1 11.6791 9.7283 0.1799 24 1 9.4873 10.3115 1.0381 25 1 11.0833 9.1706 2.4635 26 6 8.3486 5.2571 0.7440 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 0.5489 2.1252 -1.3970 33 1 1.9988 3.1541 -1.3076 34 1 2.0698 1.5876 -2.1492 35 1 3.9205 1.2913 -1.8620 36 1 3.6262 3.3459 1.1364 37 1 3.7721 3.4495 -0.6345 38 1 6.0128 2.0490 0.3633 39 1 7.8324 1.9131 0.5108 40 1 10.2803 1.9011 0.7213 41 1 11.5160 4.0088 0.9485 42 1 8.5510 8.4305 -0.7127 43 1 7.8089 6.1925 0.7495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177887072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:55 Heat of formation + Delta-G solvation = -114.744056 kcal Electronic energy + Delta-G solvation = -22798.931509 eV Core-core repulsion = 19420.799873 eV Total energy + Delta-G solvation = -3378.131636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.04004 -39.71067 -38.71541 -35.87231 -35.59626 -35.15966 -32.28488 -31.31314 -31.02790 -28.89821 -27.22589 -26.32053 -24.16353 -22.94523 -22.58605 -21.40101 -20.68372 -19.53117 -18.25209 -17.59413 -17.09581 -17.00308 -16.59678 -16.38096 -16.00138 -15.46855 -15.37554 -15.12031 -14.92599 -14.59079 -14.30944 -14.20449 -13.76249 -13.46775 -13.25007 -12.97101 -12.91107 -12.78183 -12.56184 -12.55187 -12.38086 -12.21035 -12.06173 -11.90988 -11.52414 -11.51929 -11.38057 -11.07184 -11.03424 -10.63585 -10.15830 -9.47193 -9.38962 -8.66849 -6.38628 0.37163 1.00305 1.36025 1.46049 1.52421 2.08634 2.18946 2.21712 2.78429 3.44042 3.59537 3.69414 3.83108 3.94211 4.05590 4.14768 4.28270 4.41930 4.52705 4.58387 4.60508 4.62239 4.69991 4.82571 4.91256 4.98476 5.07487 5.08512 5.15884 5.17323 5.18563 5.24004 5.30780 5.43351 5.50002 5.51721 5.55298 5.86057 5.92265 6.04649 6.27988 6.50202 6.66294 6.72616 6.87465 6.94018 7.29823 8.30192 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027609 B = 0.003115 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.913531 B = 8986.450375 C = 9743.476115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.115 4.115 4 H 0.083 0.917 5 C -0.160 4.160 6 C 0.113 3.887 7 H 0.111 0.889 8 O -0.564 6.564 9 C 0.084 3.916 10 N -0.708 5.708 11 C 0.558 3.442 12 O -0.591 6.591 13 C -0.140 4.140 14 C -0.197 4.197 15 C -0.096 4.096 16 C -0.216 4.216 17 C 0.066 3.934 18 C -0.497 4.497 19 H 0.084 0.916 20 C 0.028 3.972 21 N -0.826 5.826 22 Si 0.983 3.017 23 H -0.257 1.257 24 H -0.272 1.272 25 H -0.255 1.255 26 C -0.131 4.131 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.383 0.617 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.413 0.587 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.286 0.714 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.227 -13.323 -0.555 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.134 4.134 4 H 0.102 0.898 5 C -0.217 4.217 6 C 0.053 3.947 7 H 0.129 0.871 8 O -0.371 6.371 9 C -0.039 4.039 10 N -0.361 5.361 11 C 0.348 3.652 12 O -0.473 6.473 13 C -0.143 4.143 14 C -0.217 4.217 15 C -0.114 4.114 16 C -0.236 4.236 17 C 0.064 3.936 18 C -0.527 4.527 19 H 0.103 0.897 20 C -0.186 4.186 21 N -0.452 5.452 22 Si 0.803 3.197 23 H -0.181 1.181 24 H -0.197 1.197 25 H -0.178 1.178 26 C -0.152 4.152 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.233 0.767 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.251 0.749 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.607 -12.882 -0.273 18.739 hybrid contribution 0.223 1.249 -0.312 1.306 sum -13.383 -11.633 -0.585 17.742 Atomic orbital electron populations 1.21829 0.95249 1.01937 1.02052 1.21444 0.96113 0.94802 1.02427 1.21734 0.93792 0.98016 0.99894 0.89821 1.21985 1.02747 1.00034 0.96917 1.22151 0.92743 0.89979 0.89780 0.87107 1.86550 1.76122 1.57132 1.17315 1.22262 0.79827 0.99528 1.02313 1.45653 1.07830 1.08320 1.74253 1.18751 0.88021 0.83521 0.74892 1.90664 1.70461 1.33404 1.52760 1.19791 0.91544 0.95456 1.07479 1.20841 0.94591 0.95277 1.10952 1.20928 0.93964 0.97577 0.98930 1.21418 0.98809 0.92689 1.10706 1.17961 0.91686 0.94024 0.89935 1.19855 1.05302 0.92389 1.35122 0.89746 1.26873 0.94136 1.05270 0.92360 1.69890 1.21989 1.31750 1.21558 0.85191 0.78745 0.75636 0.80096 1.18110 1.19726 1.17841 1.21443 0.94497 0.96179 1.03035 0.92716 0.92274 0.92356 0.91684 0.91947 0.90969 0.93144 0.91556 0.76678 0.91484 0.91781 0.74855 0.84857 0.84369 0.87259 0.90316 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.67 71.98 0.70 -1.03 16 2 C -0.11 -1.43 5.25 30.60 0.16 -1.27 16 3 C -0.12 -1.65 2.22 -10.79 -0.02 -1.67 16 4 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 5 C -0.16 -2.19 8.28 71.98 0.60 -1.60 16 6 C 0.11 2.03 2.80 30.59 0.09 2.11 16 7 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 8 O -0.56 -10.62 12.61 -148.98 -1.88 -12.50 16 9 C 0.08 2.16 5.09 86.38 0.44 2.60 16 10 N -0.71 -22.71 5.40 -465.95 -2.52 -25.23 16 11 C 0.56 24.97 7.77 86.80 0.67 25.64 16 12 O -0.59 -31.08 16.33 -3.86 -0.06 -31.14 16 13 C -0.14 -6.74 5.87 -20.13 -0.12 -6.85 16 14 C -0.20 -7.94 9.55 22.70 0.22 -7.72 16 15 C -0.10 -3.88 10.01 22.18 0.22 -3.66 16 16 C -0.22 -10.26 9.78 22.77 0.22 -10.04 16 17 C 0.07 3.65 5.57 -21.32 -0.12 3.53 16 18 C -0.50 -27.40 9.05 23.47 0.21 -27.18 16 19 H 0.08 4.37 7.90 -2.91 -0.02 4.35 16 20 C 0.03 1.50 5.14 85.25 0.44 1.94 16 21 N -0.83 -46.63 10.97 21.82 0.24 -46.39 16 22 Si 0.98 39.97 29.59 68.60 2.03 42.00 16 23 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 25 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 26 C -0.13 -7.40 8.23 23.01 0.19 -7.21 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.63 6.56 -2.39 -0.02 0.62 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.91 7.96 -2.39 -0.02 0.89 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.87 6.56 -2.39 -0.02 0.85 16 33 H 0.05 0.82 6.56 -2.39 -0.02 0.80 16 34 H 0.07 0.80 6.72 -2.38 -0.02 0.79 16 35 H 0.38 5.80 7.19 -74.06 -0.53 5.27 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.74 6.56 -2.39 -0.02 1.72 16 38 H 0.41 11.44 6.37 -92.71 -0.59 10.85 16 39 H 0.13 4.19 6.38 -2.91 -0.02 4.17 16 40 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 41 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.29 14.87 8.30 -92.71 -0.77 14.10 16 43 H 0.10 6.19 5.76 -2.91 -0.02 6.17 16 Total: -1.00 -69.37 348.30 1.62 -67.75 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -0.09 Total: 37.91 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 3.89 Total: -32.40 kcal Atomic # 7 Polarization: -69.34 SS G_CDS: -2.28 Total: -71.62 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -1.94 Total: -43.64 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -69.37 1.62 -67.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177887072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.993 kcal (2) G-P(sol) polarization free energy of solvation -69.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds