Wall clock time and date at job start Tue Mar 31 2020 07:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36936 * 119.99656 * 2 1 4 4 H 1.07997 * 119.99449 * 159.28122 * 3 2 1 5 5 C 1.38807 * 120.00223 * 339.54835 * 3 2 1 6 6 N 1.31616 * 120.00027 * 347.61968 * 5 3 2 7 7 Si 1.86801 * 120.00036 * 167.60946 * 5 3 2 8 8 H 1.48504 * 109.46872 * 60.00648 * 7 5 3 9 9 H 1.48494 * 109.47394 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47308 * 300.00990 * 7 5 3 11 11 C 1.46496 * 120.00002 * 180.02562 * 2 1 3 12 12 C 1.50693 * 109.47532 * 269.99906 * 11 2 1 13 13 C 1.38392 * 119.92517 * 269.72617 * 12 11 2 14 14 C 1.38342 * 120.30134 * 179.76192 * 13 12 11 15 15 C 1.37959 * 120.15349 * 0.50861 * 14 13 12 16 16 C 1.39612 * 119.84663 * 359.74826 * 15 14 13 17 17 C 1.47724 * 120.14998 * 180.02562 * 16 15 14 18 18 O 1.21473 * 120.00352 * 179.97438 * 17 16 15 19 19 O 1.34714 * 120.00260 * 359.97438 * 17 16 15 20 20 C 1.45196 * 117.00393 * 179.97438 * 19 17 16 21 21 C 1.53012 * 109.47040 * 59.99383 * 20 19 17 22 22 C 1.53002 * 109.47383 * 179.97438 * 20 19 17 23 23 C 1.52999 * 109.46949 * 299.99907 * 20 19 17 24 24 C 1.37928 * 119.92543 * 89.99621 * 12 11 2 25 25 H 1.08994 * 109.47060 * 84.89134 * 1 2 3 26 26 H 1.09002 * 109.47050 * 204.89664 * 1 2 3 27 27 H 1.09003 * 109.46946 * 324.88645 * 1 2 3 28 28 H 0.97003 * 119.99914 * 180.02562 * 6 5 3 29 29 H 1.09005 * 109.47134 * 30.00259 * 11 2 1 30 30 H 1.08999 * 109.47034 * 149.99234 * 11 2 1 31 31 H 1.08000 * 119.84969 * 0.02562 * 13 12 11 32 32 H 1.08001 * 119.92255 * 180.25860 * 14 13 12 33 33 H 1.08009 * 120.07919 * 179.76476 * 15 14 13 34 34 H 1.08998 * 109.46880 * 60.00494 * 21 20 19 35 35 H 1.08995 * 109.46791 * 179.97438 * 21 20 19 36 36 H 1.08993 * 109.47139 * 300.00359 * 21 20 19 37 37 H 1.09001 * 109.46642 * 60.00286 * 22 20 19 38 38 H 1.08996 * 109.46830 * 179.97438 * 22 20 19 39 39 H 1.08998 * 109.46949 * 300.00186 * 22 20 19 40 40 H 1.08996 * 109.47554 * 60.00054 * 23 20 19 41 41 H 1.09003 * 109.47150 * 179.97438 * 23 20 19 42 42 H 1.08994 * 109.46961 * 299.99792 * 23 20 19 43 43 H 1.07998 * 120.07781 * 359.96214 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1773 1.2161 0.3309 5 6 1.5212 2.3501 -0.4200 6 7 0.3635 2.2852 -1.0427 7 14 2.3185 4.0091 -0.1013 8 1 3.6448 4.0570 -0.7677 9 1 1.4526 5.0868 -0.6434 10 1 2.4919 4.2023 1.3608 11 6 2.1975 -1.2687 -0.0006 12 6 2.4488 -1.7044 1.4199 13 6 3.6053 -1.3090 2.0691 14 6 3.8415 -1.7005 3.3748 15 6 2.9292 -2.4972 4.0352 16 6 1.7629 -2.9041 3.3846 17 6 0.7812 -3.7568 4.0856 18 8 -0.2329 -4.1090 3.5171 19 8 1.0105 -4.1440 5.3554 20 6 0.0026 -4.9806 5.9818 21 6 -0.1569 -6.2740 5.1800 22 6 0.4347 -5.3167 7.4105 23 6 -1.3320 -4.2331 6.0146 24 6 1.5282 -2.5010 2.0684 25 1 -0.3633 0.0915 -1.0235 26 1 -0.3633 -0.9322 0.4326 27 1 -0.3633 0.8407 0.5911 28 1 -0.0755 3.0988 -1.3365 29 1 1.6085 -2.0281 -0.5148 30 1 3.1499 -1.1381 -0.5145 31 1 4.3247 -0.6885 1.5554 32 1 4.7441 -1.3849 3.8769 33 1 3.1166 -2.8052 5.0533 34 1 0.7939 -6.8065 5.1566 35 1 -0.9132 -6.9022 5.6505 36 1 -0.4645 -6.0348 4.1621 37 1 0.5485 -4.3954 7.9818 38 1 -0.3222 -5.9443 7.8808 39 1 1.3854 -5.8493 7.3867 40 1 -1.6398 -3.9940 4.9967 41 1 -2.0888 -4.8613 6.4844 42 1 -1.2185 -3.3118 6.5857 43 1 0.6279 -2.8120 1.5594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179936123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:46 Heat of formation + Delta-G solvation = -42.280332 kcal Electronic energy + Delta-G solvation = -23326.477308 eV Core-core repulsion = 19951.487934 eV Total energy + Delta-G solvation = -3374.989373 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.78214 -38.85793 -36.82483 -35.48884 -34.14449 -32.11437 -30.89195 -30.09992 -27.59195 -27.53900 -26.19034 -25.59161 -24.49058 -22.02383 -21.42712 -20.65617 -19.31910 -17.29804 -16.69751 -16.62342 -15.91787 -15.81268 -14.97636 -14.86287 -14.55021 -14.42402 -13.71761 -13.62796 -13.57101 -13.17291 -13.03730 -12.65778 -12.47898 -12.11885 -12.08874 -12.05106 -11.81249 -11.53965 -11.51210 -11.25337 -11.10531 -10.86803 -10.73910 -10.65325 -10.46104 -10.25974 -10.02647 -9.92744 -9.88899 -8.69361 -8.59253 -8.37460 -6.79952 -5.72060 -3.17884 1.00963 1.72319 2.66599 2.78481 3.38462 3.44301 3.44899 4.10570 4.52293 4.53776 4.59451 4.68484 4.75106 5.11856 5.22141 5.28104 5.35515 5.40428 5.47475 5.50072 5.56862 5.64749 5.67908 5.69518 5.71358 5.78244 5.83960 6.00671 6.10599 6.17029 6.28295 6.36609 6.48144 6.54794 6.61169 6.72671 6.82447 7.08482 7.22595 7.43372 7.72628 7.81743 7.93069 8.37393 9.22478 9.85313 10.33103 11.32599 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.003582 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.147577 B = 7815.746276 C = 8104.618955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.594 5.594 3 C -0.256 4.256 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.182 3.818 12 C -0.091 4.091 13 C -0.066 4.066 14 C -0.138 4.138 15 C -0.080 4.080 16 C -0.137 4.137 17 C 0.515 3.485 18 O -0.505 6.505 19 O -0.349 6.349 20 C 0.117 3.883 21 C -0.183 4.183 22 C -0.140 4.140 23 C -0.184 4.184 24 C -0.047 4.047 25 H 0.031 0.969 26 H -0.003 1.003 27 H 0.044 0.956 28 H 0.253 0.747 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.422 -14.992 14.006 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.315 5.315 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.211 1.211 11 C 0.054 3.946 12 C -0.095 4.095 13 C -0.085 4.085 14 C -0.156 4.156 15 C -0.098 4.098 16 C -0.138 4.138 17 C 0.361 3.639 18 O -0.395 6.395 19 O -0.266 6.266 20 C 0.081 3.919 21 C -0.240 4.240 22 C -0.197 4.197 23 C -0.241 4.241 24 C -0.066 4.066 25 H 0.050 0.950 26 H 0.016 0.984 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.951 -14.948 13.761 20.411 hybrid contribution 0.189 1.017 0.360 1.095 sum 2.140 -13.930 14.120 19.951 Atomic orbital electron populations 1.20840 0.82226 0.95598 0.99475 1.43908 1.01949 1.00148 1.85534 1.19139 0.96841 0.85151 1.37437 0.91361 1.24969 0.97531 0.98359 0.98711 1.70078 1.17197 1.26919 1.41069 0.86330 0.78449 0.83741 0.77991 1.20896 1.21608 1.21104 1.19790 0.97180 0.89013 0.88618 1.21265 0.92895 0.94299 1.00996 1.21382 0.96814 0.96176 0.94158 1.21086 0.99778 0.99479 0.95269 1.21245 0.92730 0.96400 0.99442 1.19079 0.95866 1.03551 0.95334 1.21240 0.85204 0.77729 0.79683 1.90722 1.27698 1.53875 1.67182 1.86594 1.48838 1.63421 1.27790 1.22148 0.87187 0.89692 0.92907 1.22493 1.02527 0.96116 1.02867 1.21840 1.02383 1.02451 0.92993 1.22499 0.95971 1.00721 1.04940 1.21150 0.98628 0.94734 0.92041 0.95026 0.98406 0.93730 0.93667 0.93243 0.92118 0.85594 0.85844 0.85425 0.92069 0.91200 0.89639 0.91471 0.90461 0.91521 0.89594 0.91194 0.91958 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.11 8.96 59.85 0.54 4.65 16 2 N -0.59 -14.88 2.91 -182.50 -0.53 -15.41 16 3 C -0.26 -6.95 9.69 -15.06 -0.15 -7.10 16 4 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 5 C 0.00 0.07 5.12 -17.43 -0.09 -0.02 16 6 N -0.91 -26.54 10.52 55.49 0.58 -25.96 16 7 Si 0.91 21.82 29.57 -169.99 -5.03 16.79 16 8 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 C 0.18 3.68 5.76 -5.20 -0.03 3.65 16 12 C -0.09 -1.66 5.46 -104.68 -0.57 -2.23 16 13 C -0.07 -1.09 9.69 -39.49 -0.38 -1.47 16 14 C -0.14 -1.96 10.03 -39.65 -0.40 -2.36 16 15 C -0.08 -1.14 9.62 -39.17 -0.38 -1.52 16 16 C -0.14 -2.23 5.87 -104.98 -0.62 -2.84 16 17 C 0.52 8.13 7.21 34.61 0.25 8.38 16 18 O -0.51 -8.71 11.89 -19.25 -0.23 -8.94 16 19 O -0.35 -4.75 9.14 -40.53 -0.37 -5.12 16 20 C 0.12 1.29 1.13 -90.61 -0.10 1.19 16 21 C -0.18 -1.92 8.37 37.16 0.31 -1.61 16 22 C -0.14 -1.13 8.85 37.16 0.33 -0.80 16 23 C -0.18 -2.05 8.37 37.16 0.31 -1.74 16 24 C -0.05 -0.82 9.24 -39.17 -0.36 -1.19 16 25 H 0.03 0.85 7.41 -51.93 -0.38 0.46 16 26 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 27 H 0.04 1.22 7.15 -51.93 -0.37 0.85 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.05 0.94 8.01 -51.93 -0.42 0.52 16 30 H 0.06 1.18 7.98 -51.93 -0.41 0.77 16 31 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.13 1.55 7.61 -52.48 -0.40 1.15 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 1.10 5.88 -51.93 -0.31 0.80 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.13 2.35 7.65 -52.49 -0.40 1.95 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -30.64 353.62 -8.35 -38.99 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.77 Total: -0.67 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -1.34 Total: -5.01 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.05 Total: -41.37 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.60 Total: -14.06 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.64 -8.35 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179936123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.292 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds