Wall clock time and date at job start Tue Mar 31 2020 07:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36936 * 119.99656 * 2 1 4 4 H 1.07997 * 119.99449 * 159.28122 * 3 2 1 5 5 C 1.38807 * 120.00223 * 339.54835 * 3 2 1 6 6 N 1.31616 * 120.00027 * 347.61968 * 5 3 2 7 7 Si 1.86801 * 120.00036 * 167.60946 * 5 3 2 8 8 H 1.48504 * 109.46872 * 60.00648 * 7 5 3 9 9 H 1.48494 * 109.47394 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47308 * 300.00990 * 7 5 3 11 11 C 1.46496 * 120.00002 * 180.02562 * 2 1 3 12 12 C 1.50693 * 109.47532 * 269.99906 * 11 2 1 13 13 C 1.38392 * 119.92517 * 269.72617 * 12 11 2 14 14 C 1.38342 * 120.30134 * 179.76192 * 13 12 11 15 15 C 1.37959 * 120.15349 * 0.50861 * 14 13 12 16 16 C 1.39612 * 119.84663 * 359.74826 * 15 14 13 17 17 C 1.47724 * 120.14998 * 180.02562 * 16 15 14 18 18 O 1.21473 * 120.00352 * 179.97438 * 17 16 15 19 19 O 1.34714 * 120.00260 * 359.97438 * 17 16 15 20 20 C 1.45196 * 117.00393 * 179.97438 * 19 17 16 21 21 C 1.53012 * 109.47040 * 59.99383 * 20 19 17 22 22 C 1.53002 * 109.47383 * 179.97438 * 20 19 17 23 23 C 1.52999 * 109.46949 * 299.99907 * 20 19 17 24 24 C 1.37928 * 119.92543 * 89.99621 * 12 11 2 25 25 H 1.08994 * 109.47060 * 84.89134 * 1 2 3 26 26 H 1.09002 * 109.47050 * 204.89664 * 1 2 3 27 27 H 1.09003 * 109.46946 * 324.88645 * 1 2 3 28 28 H 0.97003 * 119.99914 * 180.02562 * 6 5 3 29 29 H 1.09005 * 109.47134 * 30.00259 * 11 2 1 30 30 H 1.08999 * 109.47034 * 149.99234 * 11 2 1 31 31 H 1.08000 * 119.84969 * 0.02562 * 13 12 11 32 32 H 1.08001 * 119.92255 * 180.25860 * 14 13 12 33 33 H 1.08009 * 120.07919 * 179.76476 * 15 14 13 34 34 H 1.08998 * 109.46880 * 60.00494 * 21 20 19 35 35 H 1.08995 * 109.46791 * 179.97438 * 21 20 19 36 36 H 1.08993 * 109.47139 * 300.00359 * 21 20 19 37 37 H 1.09001 * 109.46642 * 60.00286 * 22 20 19 38 38 H 1.08996 * 109.46830 * 179.97438 * 22 20 19 39 39 H 1.08998 * 109.46949 * 300.00186 * 22 20 19 40 40 H 1.08996 * 109.47554 * 60.00054 * 23 20 19 41 41 H 1.09003 * 109.47150 * 179.97438 * 23 20 19 42 42 H 1.08994 * 109.46961 * 299.99792 * 23 20 19 43 43 H 1.07998 * 120.07781 * 359.96214 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1773 1.2161 0.3309 5 6 1.5212 2.3501 -0.4200 6 7 0.3635 2.2852 -1.0427 7 14 2.3185 4.0091 -0.1013 8 1 3.6448 4.0570 -0.7677 9 1 1.4526 5.0868 -0.6434 10 1 2.4919 4.2023 1.3608 11 6 2.1975 -1.2687 -0.0006 12 6 2.4488 -1.7044 1.4199 13 6 3.6053 -1.3090 2.0691 14 6 3.8415 -1.7005 3.3748 15 6 2.9292 -2.4972 4.0352 16 6 1.7629 -2.9041 3.3846 17 6 0.7812 -3.7568 4.0856 18 8 -0.2329 -4.1090 3.5171 19 8 1.0105 -4.1440 5.3554 20 6 0.0026 -4.9806 5.9818 21 6 -0.1569 -6.2740 5.1800 22 6 0.4347 -5.3167 7.4105 23 6 -1.3320 -4.2331 6.0146 24 6 1.5282 -2.5010 2.0684 25 1 -0.3633 0.0915 -1.0235 26 1 -0.3633 -0.9322 0.4326 27 1 -0.3633 0.8407 0.5911 28 1 -0.0755 3.0988 -1.3365 29 1 1.6085 -2.0281 -0.5148 30 1 3.1499 -1.1381 -0.5145 31 1 4.3247 -0.6885 1.5554 32 1 4.7441 -1.3849 3.8769 33 1 3.1166 -2.8052 5.0533 34 1 0.7939 -6.8065 5.1566 35 1 -0.9132 -6.9022 5.6505 36 1 -0.4645 -6.0348 4.1621 37 1 0.5485 -4.3954 7.9818 38 1 -0.3222 -5.9443 7.8808 39 1 1.3854 -5.8493 7.3867 40 1 -1.6398 -3.9940 4.9967 41 1 -2.0888 -4.8613 6.4844 42 1 -1.2185 -3.3118 6.5857 43 1 0.6279 -2.8120 1.5594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179936123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:45 Heat of formation + Delta-G solvation = -57.260762 kcal Electronic energy + Delta-G solvation = -23327.126908 eV Core-core repulsion = 19951.487934 eV Total energy + Delta-G solvation = -3375.638974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.90615 -40.12192 -37.97576 -37.29436 -35.11896 -33.84530 -32.15845 -31.78414 -28.39224 -28.29492 -28.09839 -27.40856 -25.70183 -23.69272 -22.61348 -22.08730 -20.44713 -18.82208 -18.33450 -17.72674 -17.04552 -16.99992 -16.87787 -16.14605 -15.83068 -15.45772 -15.31784 -14.96582 -14.87613 -14.59221 -14.54349 -13.67901 -13.52917 -13.34303 -13.13945 -13.04949 -12.94022 -12.86850 -12.77575 -12.71336 -12.54439 -12.48052 -12.33878 -12.16312 -11.96790 -11.93323 -11.84828 -11.41317 -11.06272 -10.63468 -9.94247 -9.73805 -8.82885 -7.81106 -5.29306 -0.24128 0.45782 1.47201 1.50553 1.55154 1.56844 1.61655 2.51592 2.85472 3.33042 3.58729 3.75082 3.78676 3.84385 3.92406 3.94983 4.00723 4.20627 4.37973 4.48101 4.52409 4.59178 4.65367 4.74879 4.79866 4.81685 4.87731 4.88321 4.95498 4.96290 5.08997 5.12141 5.25239 5.28996 5.29577 5.35556 5.42642 5.51673 5.62524 5.68998 5.73530 5.97304 6.31001 6.76982 7.13954 7.84711 8.29765 9.22667 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.003582 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.147577 B = 7815.746276 C = 8104.618955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.611 5.611 3 C -0.259 4.259 4 H 0.080 0.920 5 C -0.058 4.058 6 N -0.943 5.943 7 Si 0.970 3.030 8 H -0.270 1.270 9 H -0.298 1.298 10 H -0.280 1.280 11 C 0.182 3.818 12 C -0.107 4.107 13 C -0.074 4.074 14 C -0.127 4.127 15 C -0.067 4.067 16 C -0.149 4.149 17 C 0.515 3.485 18 O -0.528 6.528 19 O -0.347 6.347 20 C 0.105 3.895 21 C -0.180 4.180 22 C -0.134 4.134 23 C -0.183 4.183 24 C -0.061 4.061 25 H 0.007 0.993 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.247 0.753 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.133 0.867 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.378 -15.835 16.814 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.333 5.333 3 C -0.389 4.389 4 H 0.097 0.903 5 C -0.252 4.252 6 N -0.590 5.590 7 Si 0.798 3.202 8 H -0.196 1.196 9 H -0.224 1.224 10 H -0.206 1.206 11 C 0.056 3.944 12 C -0.110 4.110 13 C -0.093 4.093 14 C -0.145 4.145 15 C -0.085 4.085 16 C -0.150 4.150 17 C 0.362 3.638 18 O -0.419 6.419 19 O -0.264 6.264 20 C 0.069 3.931 21 C -0.237 4.237 22 C -0.191 4.191 23 C -0.240 4.240 24 C -0.080 4.080 25 H 0.025 0.975 26 H 0.037 0.963 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.151 0.849 32 H 0.180 0.820 33 H 0.174 0.826 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.948 -15.833 16.595 23.274 hybrid contribution -0.404 1.124 -0.430 1.270 sum 3.544 -14.709 16.165 22.141 Atomic orbital electron populations 1.20499 0.83048 0.95311 0.97511 1.44115 1.01834 1.01436 1.85931 1.19555 0.97311 0.85974 1.36012 0.90255 1.25790 0.98341 1.01842 0.99212 1.70258 1.18802 1.27169 1.42797 0.85294 0.77753 0.79298 0.77844 1.19587 1.22423 1.20594 1.19883 0.96902 0.87196 0.90449 1.20908 0.94420 0.95992 0.99702 1.21565 0.96202 0.96194 0.95304 1.21462 1.00750 0.98082 0.94168 1.21601 0.91416 0.95063 1.00439 1.19230 0.96942 1.03856 0.94953 1.21220 0.84732 0.77498 0.80344 1.90727 1.28576 1.54685 1.67894 1.86574 1.49715 1.63633 1.26472 1.22566 0.86695 0.89310 0.94502 1.22466 1.03567 0.96351 1.01354 1.21867 1.03503 1.03108 0.90576 1.22485 0.96926 1.01412 1.03197 1.21046 0.98272 0.95634 0.93079 0.97497 0.96276 0.96635 0.94406 0.92754 0.91492 0.84903 0.82029 0.82570 0.91427 0.88812 0.92558 0.91215 0.88074 0.90806 0.92698 0.88707 0.91943 0.86739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.50 8.96 127.77 1.15 10.64 16 2 N -0.61 -31.09 2.91 -731.32 -2.13 -33.22 16 3 C -0.26 -14.06 9.69 84.03 0.81 -13.25 16 4 H 0.08 4.04 7.86 -2.91 -0.02 4.02 16 5 C -0.06 -3.24 5.12 84.86 0.43 -2.81 16 6 N -0.94 -56.81 10.52 21.65 0.23 -56.58 16 7 Si 0.97 45.08 29.57 68.60 2.03 47.11 16 8 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 9 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 11 C 0.18 7.41 5.76 85.63 0.49 7.90 16 12 C -0.11 -3.87 5.46 -19.90 -0.11 -3.98 16 13 C -0.07 -2.28 9.69 22.33 0.22 -2.06 16 14 C -0.13 -3.15 10.03 22.23 0.22 -2.93 16 15 C -0.07 -1.72 9.62 22.54 0.22 -1.50 16 16 C -0.15 -4.69 5.87 -20.10 -0.12 -4.81 16 17 C 0.52 16.05 7.21 70.33 0.51 16.56 16 18 O -0.53 -18.67 11.89 19.92 0.24 -18.44 16 19 O -0.35 -8.86 9.14 -56.24 -0.51 -9.37 16 20 C 0.10 2.11 1.13 -10.79 -0.01 2.10 16 21 C -0.18 -3.52 8.37 71.99 0.60 -2.92 16 22 C -0.13 -1.71 8.85 71.98 0.64 -1.07 16 23 C -0.18 -3.87 8.37 71.98 0.60 -3.27 16 24 C -0.06 -2.19 9.24 22.54 0.21 -1.98 16 25 H 0.01 0.38 7.41 -2.39 -0.02 0.36 16 26 H 0.02 0.88 8.03 -2.39 -0.02 0.86 16 27 H 0.01 0.86 7.15 -2.39 -0.02 0.84 16 28 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.05 2.11 8.01 -2.38 -0.02 2.09 16 30 H 0.07 2.60 7.98 -2.39 -0.02 2.58 16 31 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 32 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.16 3.12 7.61 -2.91 -0.02 3.10 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.45 5.88 -2.39 -0.01 1.44 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.05 1.52 5.88 -2.39 -0.01 1.51 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.11 4.34 7.65 -2.91 -0.02 4.32 16 Total: -1.00 -67.84 353.62 6.69 -61.15 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.98 Total: 12.71 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 5.86 Total: -3.36 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -1.90 Total: -89.80 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.28 Total: -27.81 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -67.84 6.69 -61.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179936123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.891 kcal (2) G-P(sol) polarization free energy of solvation -67.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds