Wall clock time and date at job start Tue Mar 31 2020 07:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1 5 5 C 1.50701 * 109.47419 * 184.99997 * 3 2 1 6 6 O 1.21280 * 119.99781 * 240.00479 * 5 3 2 7 7 N 1.34780 * 119.99795 * 59.99803 * 5 3 2 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 3 9 9 H 1.09004 * 109.47650 * 35.00435 * 8 7 5 10 10 C 1.52999 * 109.47357 * 275.00168 * 8 7 5 11 11 C 1.50705 * 109.47042 * 155.00291 * 8 7 5 12 12 H 1.07998 * 119.99701 * 0.02562 * 11 8 7 13 13 C 1.37868 * 120.00265 * 179.97438 * 11 8 7 14 14 N 1.31523 * 120.00057 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 120.00201 * 179.97438 * 13 11 8 16 16 H 1.48497 * 109.46923 * 60.00210 * 15 13 11 17 17 H 1.48500 * 109.47426 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47323 * 300.00483 * 15 13 11 19 19 C 1.50703 * 109.46966 * 64.99982 * 3 2 1 20 20 C 1.38271 * 119.94172 * 59.72648 * 19 3 2 21 21 C 1.38147 * 120.05198 * 179.72502 * 20 19 3 22 22 C 1.38733 * 119.94413 * 0.55297 * 21 20 19 23 23 O 1.35891 * 120.05734 * 179.74987 * 22 21 20 24 24 C 1.42903 * 117.00175 * 359.97254 * 23 22 21 25 25 C 1.38736 * 119.89007 * 359.71766 * 22 21 20 26 26 C 1.38151 * 119.93897 * 0.02562 * 25 22 21 27 27 H 1.08988 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47151 * 300.00410 * 1 2 3 29 29 H 1.09006 * 109.46918 * 59.99351 * 1 2 3 30 30 H 1.09008 * 109.47149 * 240.00076 * 2 1 3 31 31 H 1.08997 * 109.47163 * 120.00146 * 2 1 3 32 32 H 0.96995 * 120.00011 * 0.02562 * 7 5 3 33 33 H 1.09004 * 109.47178 * 180.02562 * 10 8 7 34 34 H 1.08993 * 109.47354 * 300.00073 * 10 8 7 35 35 H 1.09000 * 109.46920 * 60.00048 * 10 8 7 36 36 H 0.96994 * 120.00169 * 179.97438 * 14 13 11 37 37 H 1.07995 * 119.97022 * 0.02562 * 20 19 3 38 38 H 1.07994 * 120.02494 * 180.27157 * 21 20 19 39 39 H 1.09001 * 109.47415 * 180.02562 * 24 23 22 40 40 H 1.09004 * 109.46746 * 300.00379 * 24 23 22 41 41 H 1.09003 * 109.47297 * 60.00045 * 24 23 22 42 42 H 1.07992 * 120.03128 * 179.97438 * 25 22 21 43 43 H 1.08005 * 119.96601 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 8 4.2217 1.9434 0.7478 7 7 4.1298 0.8910 -1.2032 8 6 5.5898 0.8923 -1.3232 9 1 6.0358 0.7731 -0.3358 10 6 6.0502 2.2174 -1.9341 11 6 6.0219 -0.2468 -2.2103 12 1 5.2828 -0.9055 -2.6419 13 6 7.3606 -0.4474 -2.4719 14 7 8.2607 0.3550 -1.9468 15 14 7.8962 -1.8598 -3.5709 16 1 7.2882 -1.6982 -4.9160 17 1 9.3762 -1.8585 -3.6928 18 1 7.4500 -3.1457 -2.9772 19 6 1.6414 2.1162 1.2877 20 6 2.0729 1.6036 2.4972 21 6 1.7135 2.2227 3.6788 22 6 0.9095 3.3530 3.6516 23 8 0.5504 3.9608 4.8128 24 6 1.0363 3.3817 6.0255 25 6 0.4733 3.8621 2.4370 26 6 0.8398 3.2424 1.2580 27 1 -0.3633 -1.0275 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5140 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.5861 0.4921 -1.9004 33 1 7.1366 2.2181 -2.0238 34 1 5.6044 2.3366 -2.9215 35 1 5.7377 3.0412 -1.2925 36 1 9.2026 0.2137 -2.1305 37 1 2.6954 0.7213 2.5179 38 1 2.0544 1.8245 4.6229 39 1 0.6767 3.9623 6.8750 40 1 0.6763 2.3562 6.1081 41 1 2.1263 3.3846 6.0183 42 1 -0.1530 4.7416 2.4133 43 1 0.5008 3.6386 0.3122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180099018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:55 Heat of formation + Delta-G solvation = -66.238450 kcal Electronic energy + Delta-G solvation = -23287.137123 eV Core-core repulsion = 19911.108847 eV Total energy + Delta-G solvation = -3376.028275 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.31104 -39.16585 -37.36447 -34.79457 -34.51419 -32.28200 -30.96427 -30.14566 -29.09592 -27.68292 -26.18797 -25.23129 -22.97537 -21.98061 -21.83236 -20.27963 -19.18133 -18.13375 -17.18587 -16.41536 -15.78411 -15.59624 -15.55445 -14.98282 -14.62987 -14.34414 -14.08984 -13.77739 -13.61439 -13.32042 -13.04555 -12.55689 -12.48225 -12.39174 -12.06603 -11.80073 -11.65994 -11.59436 -11.17578 -11.08499 -10.95132 -10.89046 -10.73850 -10.63034 -10.52746 -10.30520 -10.22125 -9.04457 -8.97508 -8.77352 -8.53421 -7.96560 -7.86399 -6.11442 -4.20926 1.47826 1.55997 3.24919 3.25343 3.30735 3.31649 3.43603 3.81370 4.21923 4.42071 4.77382 4.83092 4.95237 5.00572 5.03455 5.14858 5.18116 5.20593 5.32172 5.38650 5.50602 5.52096 5.58460 5.75037 5.81375 5.85889 6.03712 6.14656 6.16722 6.29346 6.38402 6.50238 6.80618 6.83974 6.85844 6.99308 7.17586 7.41751 7.49461 7.58684 7.71241 7.93463 8.16760 8.70365 8.80016 9.17670 9.47016 10.94415 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024193 B = 0.003492 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.072876 B = 8017.546422 C = 8493.151922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.069 4.069 4 H 0.097 0.903 5 C 0.505 3.495 6 O -0.547 6.547 7 N -0.709 5.709 8 C 0.265 3.735 9 H 0.047 0.953 10 C -0.147 4.147 11 C -0.534 4.534 12 H 0.060 0.940 13 C 0.066 3.934 14 N -0.884 5.884 15 Si 0.901 3.099 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.086 4.086 20 C -0.042 4.042 21 C -0.207 4.207 22 C 0.118 3.882 23 O -0.322 6.322 24 C 0.028 3.972 25 C -0.156 4.156 26 C -0.076 4.076 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.388 0.612 33 H 0.089 0.911 34 H 0.026 0.974 35 H 0.014 0.986 36 H 0.265 0.735 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.126 0.874 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.902 2.502 8.303 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.091 4.091 4 H 0.115 0.885 5 C 0.289 3.711 6 O -0.425 6.425 7 N -0.357 5.357 8 C 0.164 3.836 9 H 0.065 0.935 10 C -0.206 4.206 11 C -0.572 4.572 12 H 0.078 0.922 13 C -0.137 4.137 14 N -0.521 5.521 15 Si 0.729 3.271 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.087 4.087 20 C -0.060 4.060 21 C -0.226 4.226 22 C 0.073 3.927 23 O -0.236 6.236 24 C -0.067 4.067 25 C -0.174 4.174 26 C -0.094 4.094 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.220 0.780 33 H 0.108 0.892 34 H 0.045 0.955 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.144 0.856 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.274 3.055 8.960 18.827 hybrid contribution 0.383 -1.076 -0.841 1.419 sum -15.891 1.979 8.119 17.954 Atomic orbital electron populations 1.21765 0.95271 1.01532 1.02013 1.21534 0.96243 0.94056 1.03177 1.20393 0.94417 0.97659 0.96589 0.88471 1.20279 0.89084 0.79025 0.82745 1.90669 1.65250 1.45970 1.40630 1.46513 1.10476 1.57507 1.21159 1.18707 0.73579 0.93722 0.97616 0.93481 1.22076 1.04356 0.96627 0.97512 1.21189 0.92469 1.12862 1.30697 0.92158 1.24889 0.96408 0.96494 0.95917 1.69897 1.01411 1.37148 1.43664 0.86518 0.77526 0.82309 0.80792 1.20165 1.21150 1.20188 1.19228 0.99091 0.96503 0.93887 1.20723 0.95459 0.98816 0.91034 1.21162 1.03777 0.98263 0.99417 1.18988 0.95340 0.92373 0.85970 1.86024 1.71141 1.53452 1.12966 1.23015 0.99727 0.99131 0.84826 1.20272 1.05108 1.02411 0.89651 1.20793 0.96886 0.94400 0.97348 0.92713 0.92476 0.92666 0.90851 0.91345 0.78006 0.89217 0.95531 0.96688 0.92541 0.85929 0.85792 0.88541 0.92797 0.92597 0.85568 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.73 37.16 0.36 -1.13 16 2 C -0.11 -1.39 5.24 -26.73 -0.14 -1.53 16 3 C -0.07 -1.00 2.38 -92.92 -0.22 -1.22 16 4 H 0.10 1.22 7.87 -51.93 -0.41 0.81 16 5 C 0.50 9.95 6.99 -10.98 -0.08 9.87 16 6 O -0.55 -13.05 14.79 5.56 0.08 -12.97 16 7 N -0.71 -14.59 4.93 -54.93 -0.27 -14.86 16 8 C 0.27 6.76 2.56 -69.08 -0.18 6.58 16 9 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 10 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 11 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 14 N -0.88 -24.99 11.32 55.43 0.63 -24.36 16 15 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 C -0.09 -1.27 3.38 -104.60 -0.35 -1.63 16 20 C -0.04 -0.64 7.87 -39.60 -0.31 -0.95 16 21 C -0.21 -2.87 9.04 -39.43 -0.36 -3.22 16 22 C 0.12 1.62 6.69 -39.21 -0.26 1.36 16 23 O -0.32 -4.03 10.50 -19.40 -0.20 -4.23 16 24 C 0.03 0.24 9.81 101.05 0.99 1.24 16 25 C -0.16 -2.04 9.99 -39.43 -0.39 -2.44 16 26 C -0.08 -1.00 9.66 -39.61 -0.38 -1.39 16 27 H 0.05 0.50 8.14 -51.94 -0.42 0.07 16 28 H 0.06 0.60 7.38 -51.93 -0.38 0.22 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.89 7.43 -51.92 -0.39 0.50 16 31 H 0.07 0.89 7.20 -51.93 -0.37 0.52 16 32 H 0.39 6.88 7.90 -40.82 -0.32 6.56 16 33 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.12 1.93 7.48 -52.49 -0.39 1.54 16 38 H 0.12 1.45 6.30 -52.49 -0.33 1.12 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 41 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 42 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.13 1.36 7.94 -52.48 -0.42 0.94 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -31.65 352.30 -7.45 -39.10 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.60 Total: 6.99 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.37 Total: -10.54 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.36 Total: -39.22 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.12 Total: -17.20 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.65 -7.45 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180099018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.142 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds