Wall clock time and date at job start Tue Mar 31 2020 07:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1 5 5 C 1.50701 * 109.47419 * 184.99997 * 3 2 1 6 6 O 1.21280 * 119.99781 * 240.00479 * 5 3 2 7 7 N 1.34780 * 119.99795 * 59.99803 * 5 3 2 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 3 9 9 H 1.09004 * 109.47650 * 35.00435 * 8 7 5 10 10 C 1.52999 * 109.47357 * 275.00168 * 8 7 5 11 11 C 1.50705 * 109.47042 * 155.00291 * 8 7 5 12 12 H 1.07998 * 119.99701 * 0.02562 * 11 8 7 13 13 C 1.37868 * 120.00265 * 179.97438 * 11 8 7 14 14 N 1.31523 * 120.00057 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 120.00201 * 179.97438 * 13 11 8 16 16 H 1.48497 * 109.46923 * 60.00210 * 15 13 11 17 17 H 1.48500 * 109.47426 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47323 * 300.00483 * 15 13 11 19 19 C 1.50703 * 109.46966 * 64.99982 * 3 2 1 20 20 C 1.38271 * 119.94172 * 59.72648 * 19 3 2 21 21 C 1.38147 * 120.05198 * 179.72502 * 20 19 3 22 22 C 1.38733 * 119.94413 * 0.55297 * 21 20 19 23 23 O 1.35891 * 120.05734 * 179.74987 * 22 21 20 24 24 C 1.42903 * 117.00175 * 359.97254 * 23 22 21 25 25 C 1.38736 * 119.89007 * 359.71766 * 22 21 20 26 26 C 1.38151 * 119.93897 * 0.02562 * 25 22 21 27 27 H 1.08988 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47151 * 300.00410 * 1 2 3 29 29 H 1.09006 * 109.46918 * 59.99351 * 1 2 3 30 30 H 1.09008 * 109.47149 * 240.00076 * 2 1 3 31 31 H 1.08997 * 109.47163 * 120.00146 * 2 1 3 32 32 H 0.96995 * 120.00011 * 0.02562 * 7 5 3 33 33 H 1.09004 * 109.47178 * 180.02562 * 10 8 7 34 34 H 1.08993 * 109.47354 * 300.00073 * 10 8 7 35 35 H 1.09000 * 109.46920 * 60.00048 * 10 8 7 36 36 H 0.96994 * 120.00169 * 179.97438 * 14 13 11 37 37 H 1.07995 * 119.97022 * 0.02562 * 20 19 3 38 38 H 1.07994 * 120.02494 * 180.27157 * 21 20 19 39 39 H 1.09001 * 109.47415 * 180.02562 * 24 23 22 40 40 H 1.09004 * 109.46746 * 300.00379 * 24 23 22 41 41 H 1.09003 * 109.47297 * 60.00045 * 24 23 22 42 42 H 1.07992 * 120.03128 * 179.97438 * 25 22 21 43 43 H 1.08005 * 119.96601 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 8 4.2217 1.9434 0.7478 7 7 4.1298 0.8910 -1.2032 8 6 5.5898 0.8923 -1.3232 9 1 6.0358 0.7731 -0.3358 10 6 6.0502 2.2174 -1.9341 11 6 6.0219 -0.2468 -2.2103 12 1 5.2828 -0.9055 -2.6419 13 6 7.3606 -0.4474 -2.4719 14 7 8.2607 0.3550 -1.9468 15 14 7.8962 -1.8598 -3.5709 16 1 7.2882 -1.6982 -4.9160 17 1 9.3762 -1.8585 -3.6928 18 1 7.4500 -3.1457 -2.9772 19 6 1.6414 2.1162 1.2877 20 6 2.0729 1.6036 2.4972 21 6 1.7135 2.2227 3.6788 22 6 0.9095 3.3530 3.6516 23 8 0.5504 3.9608 4.8128 24 6 1.0363 3.3817 6.0255 25 6 0.4733 3.8621 2.4370 26 6 0.8398 3.2424 1.2580 27 1 -0.3633 -1.0275 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5140 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.5861 0.4921 -1.9004 33 1 7.1366 2.2181 -2.0238 34 1 5.6044 2.3366 -2.9215 35 1 5.7377 3.0412 -1.2925 36 1 9.2026 0.2137 -2.1305 37 1 2.6954 0.7213 2.5179 38 1 2.0544 1.8245 4.6229 39 1 0.6767 3.9623 6.8750 40 1 0.6763 2.3562 6.1081 41 1 2.1263 3.3846 6.0183 42 1 -0.1530 4.7416 2.4133 43 1 0.5008 3.6386 0.3122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180099018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:55 Heat of formation + Delta-G solvation = -85.662162 kcal Electronic energy + Delta-G solvation = -23287.979398 eV Core-core repulsion = 19911.108847 eV Total energy + Delta-G solvation = -3376.870551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.45966 -40.49044 -38.54666 -36.64159 -35.68565 -34.19816 -32.00126 -31.13451 -30.92372 -28.59940 -27.40170 -27.20340 -24.00381 -23.45703 -22.94829 -21.79741 -20.75763 -19.12332 -18.85930 -17.64003 -17.31708 -17.00112 -16.61797 -16.48309 -15.93150 -15.67690 -15.35752 -15.00878 -14.87360 -14.54415 -14.34866 -14.15466 -13.83798 -13.47416 -13.38114 -13.02925 -12.91282 -12.84182 -12.82172 -12.68087 -12.53234 -12.26220 -12.14464 -12.08484 -11.85418 -11.62034 -11.56523 -11.10556 -10.64159 -10.49225 -9.88870 -9.69546 -9.01588 -8.16670 -6.34492 0.43449 0.47731 1.45103 1.47202 1.54963 1.87390 2.35820 2.39793 2.60003 2.95613 3.13684 3.66245 3.80265 3.95111 4.03849 4.12594 4.31523 4.35280 4.37154 4.44832 4.54619 4.59717 4.66584 4.72784 4.77080 4.79371 4.92284 4.95728 5.10608 5.12210 5.17005 5.24255 5.34259 5.41796 5.45365 5.47514 5.62951 5.70260 5.74111 5.83622 5.93105 6.11278 6.45803 6.73956 7.02095 7.33704 7.61592 8.89362 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024193 B = 0.003492 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.072876 B = 8017.546422 C = 8493.151922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C -0.054 4.054 4 H 0.126 0.874 5 C 0.501 3.499 6 O -0.593 6.593 7 N -0.704 5.704 8 C 0.272 3.728 9 H -0.005 1.005 10 C -0.133 4.133 11 C -0.546 4.546 12 H 0.075 0.925 13 C 0.013 3.987 14 N -0.919 5.919 15 Si 0.972 3.028 16 H -0.263 1.263 17 H -0.288 1.288 18 H -0.270 1.270 19 C -0.103 4.103 20 C -0.062 4.062 21 C -0.216 4.216 22 C 0.112 3.888 23 O -0.333 6.333 24 C 0.019 3.981 25 C -0.161 4.161 26 C -0.074 4.074 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.404 0.596 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.009 0.991 36 H 0.265 0.735 37 H 0.105 0.895 38 H 0.137 0.863 39 H 0.123 0.877 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.147 0.853 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.181 2.150 7.254 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.075 4.075 4 H 0.144 0.856 5 C 0.288 3.712 6 O -0.475 6.475 7 N -0.353 5.353 8 C 0.169 3.831 9 H 0.013 0.987 10 C -0.192 4.192 11 C -0.584 4.584 12 H 0.093 0.907 13 C -0.187 4.187 14 N -0.557 5.557 15 Si 0.797 3.203 16 H -0.188 1.188 17 H -0.213 1.213 18 H -0.195 1.195 19 C -0.104 4.104 20 C -0.080 4.080 21 C -0.235 4.235 22 C 0.067 3.933 23 O -0.247 6.247 24 C -0.075 4.075 25 C -0.180 4.180 26 C -0.092 4.092 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.240 0.760 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.074 0.926 37 H 0.123 0.877 38 H 0.155 0.845 39 H 0.141 0.859 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.165 0.835 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.602 2.690 7.903 20.389 hybrid contribution 1.090 -0.916 -0.382 1.475 sum -17.511 1.774 7.521 19.140 Atomic orbital electron populations 1.21700 0.92927 1.02518 1.02588 1.21539 0.98152 0.92348 1.02700 1.20359 0.89840 0.99583 0.97761 0.85602 1.21239 0.91392 0.77294 0.81312 1.90646 1.67010 1.47740 1.42056 1.46258 1.08701 1.58040 1.22302 1.18283 0.76248 0.93865 0.94723 0.98703 1.21898 1.02801 0.96434 0.98101 1.21534 0.93084 1.13225 1.30589 0.90729 1.25816 0.96510 0.99044 0.97285 1.70058 1.01672 1.38978 1.45033 0.85398 0.76835 0.78916 0.79199 1.18750 1.21327 1.19522 1.19337 1.00060 0.97452 0.93505 1.20735 0.96143 0.98931 0.92230 1.21316 1.04001 0.98578 0.99597 1.19187 0.95061 0.92191 0.86899 1.86014 1.71280 1.53835 1.13525 1.23300 0.99817 1.00263 0.84133 1.20614 1.05000 1.02904 0.89454 1.21090 0.96022 0.93414 0.98674 0.91576 0.92944 0.90974 0.90387 0.92837 0.76041 0.91635 0.94005 0.97174 0.92612 0.87729 0.84512 0.85881 0.91797 0.92787 0.83539 0.82842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.73 71.98 0.70 -1.75 16 2 C -0.11 -2.56 5.24 30.59 0.16 -2.40 16 3 C -0.05 -1.51 2.38 -12.28 -0.03 -1.54 16 4 H 0.13 2.78 7.87 -2.39 -0.02 2.76 16 5 C 0.50 19.93 6.99 87.66 0.61 20.54 16 6 O -0.59 -29.44 14.79 -3.03 -0.04 -29.49 16 7 N -0.70 -29.01 4.93 -446.09 -2.20 -31.21 16 8 C 0.27 14.23 2.56 44.25 0.11 14.34 16 9 H 0.00 -0.31 7.58 -2.38 -0.02 -0.33 16 10 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 11 C -0.55 -28.87 8.73 25.60 0.22 -28.65 16 12 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 13 C 0.01 0.72 5.30 84.65 0.45 1.17 16 14 N -0.92 -53.18 11.32 21.45 0.24 -52.93 16 15 Si 0.97 41.89 29.54 68.60 2.03 43.92 16 16 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 17 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 C -0.10 -2.95 3.38 -19.85 -0.07 -3.02 16 20 C -0.06 -1.93 7.87 22.26 0.18 -1.76 16 21 C -0.22 -6.00 9.04 22.37 0.20 -5.80 16 22 C 0.11 2.96 6.69 22.51 0.15 3.11 16 23 O -0.33 -7.89 10.50 -92.32 -0.97 -8.86 16 24 C 0.02 0.31 9.81 113.37 1.11 1.42 16 25 C -0.16 -3.94 9.99 22.37 0.22 -3.72 16 26 C -0.07 -1.81 9.66 22.25 0.22 -1.59 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 0.98 7.38 -2.39 -0.02 0.96 16 29 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.08 1.74 7.43 -2.38 -0.02 1.72 16 31 H 0.05 1.40 7.20 -2.39 -0.02 1.38 16 32 H 0.40 13.84 7.90 -92.71 -0.73 13.10 16 33 H 0.06 3.70 6.07 -2.38 -0.01 3.68 16 34 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 37 H 0.10 3.52 7.48 -2.91 -0.02 3.50 16 38 H 0.14 3.24 6.30 -2.91 -0.02 3.22 16 39 H 0.12 1.27 8.14 -2.39 -0.02 1.26 16 40 H 0.06 0.89 7.66 -2.38 -0.02 0.87 16 41 H 0.05 0.88 7.66 -2.39 -0.02 0.86 16 42 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 43 H 0.15 2.78 7.94 -2.91 -0.02 2.76 16 Total: -1.00 -70.48 352.30 4.23 -66.25 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.27 Total: 28.16 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 4.91 Total: -15.84 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -1.96 Total: -84.14 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -1.01 Total: -38.34 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -70.48 4.23 -66.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180099018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.412 kcal (2) G-P(sol) polarization free energy of solvation -70.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds