Wall clock time and date at job start Tue Mar 31 2020 07:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46748 * 2 1 4 4 H 1.08998 * 109.46883 * 305.74878 * 3 2 1 5 5 C 1.50696 * 109.47242 * 65.75147 * 3 2 1 6 6 O 1.21276 * 120.00044 * 34.90841 * 5 3 2 7 7 N 1.34780 * 119.99991 * 214.90322 * 5 3 2 8 8 C 1.46499 * 119.99896 * 175.02272 * 7 5 3 9 9 H 1.08995 * 109.47413 * 34.99661 * 8 7 5 10 10 C 1.53000 * 109.46921 * 275.00047 * 8 7 5 11 11 C 1.50701 * 109.47042 * 155.00434 * 8 7 5 12 12 H 1.08001 * 119.99857 * 359.97438 * 11 8 7 13 13 C 1.37878 * 119.99853 * 179.97438 * 11 8 7 14 14 N 1.31507 * 120.00006 * 0.02562 * 13 11 8 15 15 Si 1.86804 * 119.99807 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46662 * 60.00465 * 15 13 11 17 17 H 1.48496 * 109.47011 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47199 * 300.00583 * 15 13 11 19 19 C 1.50702 * 109.46825 * 185.75355 * 3 2 1 20 20 C 1.38271 * 119.94159 * 299.72722 * 19 3 2 21 21 C 1.38144 * 120.05123 * 179.72956 * 20 19 3 22 22 C 1.38729 * 119.94382 * 0.54119 * 21 20 19 23 23 O 1.35905 * 120.05389 * 179.74849 * 22 21 20 24 24 C 1.42900 * 116.99811 * 359.97438 * 23 22 21 25 25 C 1.38724 * 119.89193 * 359.73106 * 22 21 20 26 26 C 1.38147 * 119.94306 * 359.97438 * 25 22 21 27 27 H 1.09004 * 109.46684 * 184.84141 * 1 2 3 28 28 H 1.08999 * 109.47067 * 304.83558 * 1 2 3 29 29 H 1.08993 * 109.47588 * 64.84156 * 1 2 3 30 30 H 1.08995 * 109.47118 * 239.99873 * 2 1 3 31 31 H 1.08996 * 109.46728 * 119.99849 * 2 1 3 32 32 H 0.96998 * 119.99507 * 355.02415 * 7 5 3 33 33 H 1.09005 * 109.47300 * 180.02562 * 10 8 7 34 34 H 1.09006 * 109.47267 * 300.00012 * 10 8 7 35 35 H 1.09003 * 109.47091 * 60.00244 * 10 8 7 36 36 H 0.97004 * 120.00046 * 179.97438 * 14 13 11 37 37 H 1.07994 * 119.97000 * 359.97438 * 20 19 3 38 38 H 1.08004 * 120.02443 * 180.26935 * 21 20 19 39 39 H 1.09003 * 109.46842 * 179.97438 * 24 23 22 40 40 H 1.09004 * 109.47116 * 299.99530 * 24 23 22 41 41 H 1.08992 * 109.47561 * 59.99718 * 24 23 22 42 42 H 1.08002 * 120.03356 * 179.97438 * 25 22 21 43 43 H 1.08001 * 119.96940 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5949 1.9852 -0.8340 5 6 1.6572 2.1106 1.2954 6 8 1.6381 1.4705 2.3253 7 7 1.3363 3.4196 1.3095 8 6 0.8594 4.0436 2.5462 9 1 1.3693 3.5959 3.3991 10 6 -0.6486 3.8228 2.6802 11 6 1.1491 5.5220 2.5069 12 1 1.6397 5.9535 1.6470 13 6 0.7878 6.3237 3.5689 14 7 0.1908 5.7982 4.6162 15 14 1.1475 8.1561 3.5205 16 1 0.4535 8.7662 2.3580 17 1 0.6629 8.7889 4.7735 18 1 2.6113 8.3700 3.3912 19 6 3.5402 1.4450 -0.1424 20 6 4.3247 0.8175 0.8077 21 6 5.6999 0.8135 0.6764 22 6 6.2942 1.4494 -0.4038 23 8 7.6471 1.4512 -0.5325 24 6 8.3962 0.7793 0.4822 25 6 5.5052 2.0830 -1.3527 26 6 4.1301 2.0790 -1.2202 27 1 -0.3633 -1.0241 0.0867 28 1 -0.3633 0.5870 0.8435 29 1 -0.3634 0.4368 -0.9301 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.4210 3.9484 0.5007 33 1 -1.0036 4.2875 3.6001 34 1 -1.1586 4.2706 1.8272 35 1 -0.8582 2.7535 2.7086 36 1 -0.0631 6.3621 5.3635 37 1 3.8617 0.3268 1.6510 38 1 6.3120 0.3195 1.4166 39 1 9.4603 0.8559 0.2590 40 1 8.1933 1.2403 1.4489 41 1 8.1063 -0.2709 0.5125 42 1 5.9655 2.5791 -2.1944 43 1 3.5155 2.5718 -1.9589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180099038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:58 Heat of formation + Delta-G solvation = -68.780541 kcal Electronic energy + Delta-G solvation = -23399.815687 eV Core-core repulsion = 20023.677178 eV Total energy + Delta-G solvation = -3376.138509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.32845 -39.21679 -37.38941 -34.98890 -34.03554 -32.32297 -31.04140 -30.54618 -28.96799 -27.70471 -25.94503 -25.22808 -22.87178 -22.42034 -21.65614 -20.21403 -19.18214 -18.17755 -17.20444 -16.31776 -15.88000 -15.80823 -15.40134 -15.19594 -14.54478 -14.26416 -14.01752 -13.80548 -13.48804 -13.13699 -13.01759 -12.76132 -12.46180 -12.32471 -12.21174 -11.95829 -11.62393 -11.26940 -11.17734 -10.99797 -10.94980 -10.85100 -10.80987 -10.62804 -10.53777 -10.29505 -10.21129 -9.02875 -9.01269 -8.92600 -8.52461 -8.01474 -7.83627 -6.09934 -4.18804 1.38994 1.45477 3.20110 3.27112 3.32129 3.33636 3.43214 3.78737 4.16762 4.41549 4.78926 4.85370 4.90970 5.00113 5.02436 5.16264 5.22375 5.26074 5.30563 5.44195 5.45622 5.50225 5.69598 5.75414 5.78490 5.95223 6.09354 6.13731 6.30263 6.35719 6.44079 6.47842 6.72358 6.77099 6.84436 6.97539 7.16921 7.35733 7.50232 7.59924 7.72586 7.94537 8.17623 8.71962 8.81563 9.18012 9.48817 10.96014 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.004559 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.912824 B = 6140.003552 C = 7520.990828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.067 4.067 4 H 0.090 0.910 5 C 0.513 3.487 6 O -0.553 6.553 7 N -0.707 5.707 8 C 0.264 3.736 9 H 0.048 0.952 10 C -0.146 4.146 11 C -0.533 4.533 12 H 0.060 0.940 13 C 0.067 3.933 14 N -0.884 5.884 15 Si 0.900 3.100 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.105 4.105 20 C -0.061 4.061 21 C -0.206 4.206 22 C 0.120 3.880 23 O -0.321 6.321 24 C 0.028 3.972 25 C -0.153 4.153 26 C -0.073 4.073 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.388 0.612 33 H 0.090 0.910 34 H 0.026 0.974 35 H 0.013 0.987 36 H 0.264 0.736 37 H 0.133 0.867 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.129 0.871 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.134 -10.368 -11.805 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.089 4.089 4 H 0.108 0.892 5 C 0.298 3.702 6 O -0.433 6.433 7 N -0.354 5.354 8 C 0.162 3.838 9 H 0.066 0.934 10 C -0.204 4.204 11 C -0.571 4.571 12 H 0.078 0.922 13 C -0.136 4.136 14 N -0.522 5.522 15 Si 0.728 3.272 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.106 4.106 20 C -0.079 4.079 21 C -0.225 4.225 22 C 0.076 3.924 23 O -0.234 6.234 24 C -0.068 4.068 25 C -0.171 4.171 26 C -0.091 4.091 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.220 0.780 33 H 0.108 0.892 34 H 0.045 0.955 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.147 0.853 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.127 -10.659 -10.991 17.825 hybrid contribution 0.234 1.240 -0.084 1.264 sum 9.361 -9.419 -11.075 17.292 Atomic orbital electron populations 1.21797 0.95509 1.01771 1.02031 1.21389 0.96043 0.93862 1.02565 1.20367 0.92365 0.98341 0.97783 0.89184 1.20180 0.77325 0.82989 0.89728 1.90621 1.54160 1.64350 1.34124 1.46543 1.64835 1.08683 1.15374 1.18718 0.91221 0.91990 0.81862 0.93390 1.22080 0.98694 0.97028 1.02646 1.21190 1.39923 0.92017 1.03968 0.92194 1.24875 0.94717 0.98942 0.95114 1.69889 1.39834 1.35751 1.06720 0.86528 0.78721 0.84567 0.77404 1.20153 1.21132 1.20202 1.19425 0.94064 1.00959 0.96175 1.20975 0.92515 0.96498 0.97871 1.21212 0.96038 1.05772 0.99431 1.19039 0.82345 0.96206 0.94844 1.86039 1.15600 1.73001 1.48786 1.23033 0.95963 0.96616 0.91152 1.20328 0.92799 1.03912 1.00088 1.20862 0.93630 0.97431 0.97189 0.92716 0.91974 0.93010 0.91672 0.90616 0.78019 0.89165 0.95485 0.96822 0.92572 0.84940 0.85589 0.88446 0.92536 0.92734 0.85315 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.81 37.16 0.36 -1.67 16 2 C -0.10 -1.36 4.90 -26.73 -0.13 -1.49 16 3 C -0.07 -0.99 2.35 -92.92 -0.22 -1.21 16 4 H 0.09 1.14 7.87 -51.93 -0.41 0.73 16 5 C 0.51 10.14 5.42 -10.99 -0.06 10.08 16 6 O -0.55 -12.90 15.12 5.56 0.08 -12.81 16 7 N -0.71 -14.92 5.07 -54.94 -0.28 -15.20 16 8 C 0.26 6.78 2.60 -69.08 -0.18 6.60 16 9 H 0.05 1.43 7.51 -51.93 -0.39 1.04 16 10 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 11 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 14 N -0.88 -25.11 11.32 55.43 0.63 -24.48 16 15 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.11 -1.52 4.77 -104.60 -0.50 -2.02 16 20 C -0.06 -0.91 8.85 -39.60 -0.35 -1.26 16 21 C -0.21 -2.78 9.04 -39.43 -0.36 -3.13 16 22 C 0.12 1.62 6.69 -39.22 -0.26 1.36 16 23 O -0.32 -3.96 10.50 -19.44 -0.20 -4.16 16 24 C 0.03 0.24 9.81 101.05 0.99 1.23 16 25 C -0.15 -1.95 9.99 -39.44 -0.39 -2.34 16 26 C -0.07 -0.93 9.66 -39.61 -0.38 -1.31 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.00 7.17 -51.93 -0.37 0.63 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.12 7.12 -51.93 -0.37 0.75 16 32 H 0.39 7.19 8.54 -40.82 -0.35 6.84 16 33 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.13 2.10 7.15 -52.49 -0.38 1.73 16 38 H 0.13 1.43 6.30 -52.48 -0.33 1.10 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16 41 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 42 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.13 1.32 7.94 -52.49 -0.42 0.90 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -31.40 353.99 -7.61 -39.01 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.62 Total: 7.79 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.53 Total: -11.34 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.35 Total: -39.68 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.12 Total: -16.98 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.40 -7.61 -39.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180099038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.767 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds