Wall clock time and date at job start Tue Mar 31 2020 07:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46748 * 2 1 4 4 H 1.08998 * 109.46883 * 305.74878 * 3 2 1 5 5 C 1.50696 * 109.47242 * 65.75147 * 3 2 1 6 6 O 1.21276 * 120.00044 * 34.90841 * 5 3 2 7 7 N 1.34780 * 119.99991 * 214.90322 * 5 3 2 8 8 C 1.46499 * 119.99896 * 175.02272 * 7 5 3 9 9 H 1.08995 * 109.47413 * 34.99661 * 8 7 5 10 10 C 1.53000 * 109.46921 * 275.00047 * 8 7 5 11 11 C 1.50701 * 109.47042 * 155.00434 * 8 7 5 12 12 H 1.08001 * 119.99857 * 359.97438 * 11 8 7 13 13 C 1.37878 * 119.99853 * 179.97438 * 11 8 7 14 14 N 1.31507 * 120.00006 * 0.02562 * 13 11 8 15 15 Si 1.86804 * 119.99807 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46662 * 60.00465 * 15 13 11 17 17 H 1.48496 * 109.47011 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47199 * 300.00583 * 15 13 11 19 19 C 1.50702 * 109.46825 * 185.75355 * 3 2 1 20 20 C 1.38271 * 119.94159 * 299.72722 * 19 3 2 21 21 C 1.38144 * 120.05123 * 179.72956 * 20 19 3 22 22 C 1.38729 * 119.94382 * 0.54119 * 21 20 19 23 23 O 1.35905 * 120.05389 * 179.74849 * 22 21 20 24 24 C 1.42900 * 116.99811 * 359.97438 * 23 22 21 25 25 C 1.38724 * 119.89193 * 359.73106 * 22 21 20 26 26 C 1.38147 * 119.94306 * 359.97438 * 25 22 21 27 27 H 1.09004 * 109.46684 * 184.84141 * 1 2 3 28 28 H 1.08999 * 109.47067 * 304.83558 * 1 2 3 29 29 H 1.08993 * 109.47588 * 64.84156 * 1 2 3 30 30 H 1.08995 * 109.47118 * 239.99873 * 2 1 3 31 31 H 1.08996 * 109.46728 * 119.99849 * 2 1 3 32 32 H 0.96998 * 119.99507 * 355.02415 * 7 5 3 33 33 H 1.09005 * 109.47300 * 180.02562 * 10 8 7 34 34 H 1.09006 * 109.47267 * 300.00012 * 10 8 7 35 35 H 1.09003 * 109.47091 * 60.00244 * 10 8 7 36 36 H 0.97004 * 120.00046 * 179.97438 * 14 13 11 37 37 H 1.07994 * 119.97000 * 359.97438 * 20 19 3 38 38 H 1.08004 * 120.02443 * 180.26935 * 21 20 19 39 39 H 1.09003 * 109.46842 * 179.97438 * 24 23 22 40 40 H 1.09004 * 109.47116 * 299.99530 * 24 23 22 41 41 H 1.08992 * 109.47561 * 59.99718 * 24 23 22 42 42 H 1.08002 * 120.03356 * 179.97438 * 25 22 21 43 43 H 1.08001 * 119.96940 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5949 1.9852 -0.8340 5 6 1.6572 2.1106 1.2954 6 8 1.6381 1.4705 2.3253 7 7 1.3363 3.4196 1.3095 8 6 0.8594 4.0436 2.5462 9 1 1.3693 3.5959 3.3991 10 6 -0.6486 3.8228 2.6802 11 6 1.1491 5.5220 2.5069 12 1 1.6397 5.9535 1.6470 13 6 0.7878 6.3237 3.5689 14 7 0.1908 5.7982 4.6162 15 14 1.1475 8.1561 3.5205 16 1 0.4535 8.7662 2.3580 17 1 0.6629 8.7889 4.7735 18 1 2.6113 8.3700 3.3912 19 6 3.5402 1.4450 -0.1424 20 6 4.3247 0.8175 0.8077 21 6 5.6999 0.8135 0.6764 22 6 6.2942 1.4494 -0.4038 23 8 7.6471 1.4512 -0.5325 24 6 8.3962 0.7793 0.4822 25 6 5.5052 2.0830 -1.3527 26 6 4.1301 2.0790 -1.2202 27 1 -0.3633 -1.0241 0.0867 28 1 -0.3633 0.5870 0.8435 29 1 -0.3634 0.4368 -0.9301 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.4210 3.9484 0.5007 33 1 -1.0036 4.2875 3.6001 34 1 -1.1586 4.2706 1.8272 35 1 -0.8582 2.7535 2.7086 36 1 -0.0631 6.3621 5.3635 37 1 3.8617 0.3268 1.6510 38 1 6.3120 0.3195 1.4166 39 1 9.4603 0.8559 0.2590 40 1 8.1933 1.2403 1.4489 41 1 8.1063 -0.2709 0.5125 42 1 5.9655 2.5791 -2.1944 43 1 3.5155 2.5718 -1.9589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180099038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:57 Heat of formation + Delta-G solvation = -88.175718 kcal Electronic energy + Delta-G solvation = -23400.656725 eV Core-core repulsion = 20023.677178 eV Total energy + Delta-G solvation = -3376.979547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.45981 -40.54958 -38.52887 -36.77908 -35.34092 -34.27729 -32.04719 -31.67002 -30.77241 -28.58546 -27.35680 -27.02452 -24.04564 -23.78844 -22.70767 -21.88403 -20.78085 -19.13478 -18.83405 -17.72061 -17.21569 -17.13356 -16.64997 -16.55953 -16.05930 -15.59344 -15.34539 -14.88464 -14.67623 -14.55911 -14.38734 -14.24901 -13.74255 -13.63333 -13.47312 -13.23858 -12.98267 -12.85596 -12.78334 -12.74061 -12.27834 -12.22911 -12.16124 -12.11741 -11.86674 -11.79113 -11.58317 -11.10604 -10.66479 -10.52956 -9.95512 -9.70048 -9.05739 -8.17093 -6.34551 0.37196 0.39684 1.44012 1.46169 1.53909 1.88020 2.35940 2.37586 2.61391 2.85139 3.13016 3.74071 3.79985 3.92472 4.01118 4.06819 4.31197 4.33338 4.36605 4.44213 4.47058 4.57462 4.68408 4.73464 4.75017 4.76377 4.88363 4.92801 5.08487 5.08971 5.11435 5.28253 5.28877 5.38615 5.40991 5.44881 5.62546 5.66280 5.72343 5.79078 5.93358 6.11518 6.42342 6.73427 7.02056 7.33330 7.60877 8.88864 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.004559 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.912824 B = 6140.003552 C = 7520.990828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.053 4.053 4 H 0.122 0.878 5 C 0.511 3.489 6 O -0.596 6.596 7 N -0.706 5.706 8 C 0.271 3.729 9 H -0.006 1.006 10 C -0.131 4.131 11 C -0.547 4.547 12 H 0.071 0.929 13 C 0.015 3.985 14 N -0.918 5.918 15 Si 0.970 3.030 16 H -0.262 1.262 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.121 4.121 20 C -0.081 4.081 21 C -0.213 4.213 22 C 0.115 3.885 23 O -0.331 6.331 24 C 0.018 3.982 25 C -0.157 4.157 26 C -0.066 4.066 27 H 0.068 0.932 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.403 0.597 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.011 0.989 36 H 0.265 0.735 37 H 0.111 0.889 38 H 0.139 0.861 39 H 0.123 0.877 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.150 0.850 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.096 -9.521 -14.707 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.136 4.136 3 C -0.074 4.074 4 H 0.140 0.860 5 C 0.298 3.702 6 O -0.477 6.477 7 N -0.354 5.354 8 C 0.167 3.833 9 H 0.012 0.988 10 C -0.190 4.190 11 C -0.585 4.585 12 H 0.089 0.911 13 C -0.185 4.185 14 N -0.556 5.556 15 Si 0.795 3.205 16 H -0.187 1.187 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.122 4.122 20 C -0.099 4.099 21 C -0.232 4.232 22 C 0.069 3.931 23 O -0.245 6.245 24 C -0.076 4.076 25 C -0.176 4.176 26 C -0.084 4.084 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.238 0.762 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.157 0.843 39 H 0.141 0.859 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.168 0.832 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 10.103 -9.822 -13.933 19.816 hybrid contribution 0.028 0.892 0.856 1.237 sum 10.131 -8.931 -13.077 18.799 Atomic orbital electron populations 1.21786 0.95294 1.02230 1.01531 1.21402 0.96146 0.93080 1.02929 1.20337 0.93101 0.98753 0.95254 0.86040 1.21112 0.75713 0.82189 0.91213 1.90600 1.55527 1.65138 1.36462 1.46327 1.65181 1.09513 1.14428 1.18294 0.90989 0.91770 0.82205 0.98781 1.21881 0.98456 0.96689 1.01962 1.21519 1.40008 0.92491 1.04495 0.91080 1.25784 0.94367 1.03699 0.94631 1.70046 1.40709 1.37443 1.07399 0.85426 0.78588 0.78777 0.77725 1.18663 1.21090 1.19827 1.19457 0.93532 1.02076 0.97098 1.20953 0.93448 0.97576 0.97922 1.21342 0.95598 1.06109 1.00159 1.19258 0.83115 0.95916 0.94769 1.86031 1.15063 1.73409 1.49989 1.23314 0.96948 0.96907 0.90424 1.20684 0.92958 1.03478 1.00445 1.21169 0.93988 0.96318 0.96888 0.91329 0.95682 0.90692 0.88595 0.92893 0.76228 0.91599 0.93966 0.96983 0.92582 0.87121 0.84349 0.85892 0.92697 0.91728 0.83204 0.82041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.81 71.98 0.71 -3.11 16 2 C -0.10 -2.52 4.90 30.60 0.15 -2.37 16 3 C -0.05 -1.50 2.35 -12.29 -0.03 -1.53 16 4 H 0.12 2.65 7.87 -2.39 -0.02 2.63 16 5 C 0.51 20.49 5.42 87.66 0.48 20.96 16 6 O -0.60 -29.26 15.12 -3.02 -0.05 -29.30 16 7 N -0.71 -29.90 5.07 -446.11 -2.26 -32.16 16 8 C 0.27 14.34 2.60 44.25 0.12 14.46 16 9 H -0.01 -0.36 7.51 -2.39 -0.02 -0.38 16 10 C -0.13 -6.71 9.26 71.98 0.67 -6.05 16 11 C -0.55 -29.47 8.73 25.60 0.22 -29.25 16 12 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 13 C 0.02 0.83 5.30 84.66 0.45 1.28 16 14 N -0.92 -53.33 11.32 21.45 0.24 -53.09 16 15 Si 0.97 42.49 29.54 68.60 2.03 44.52 16 16 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 17 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 C -0.12 -3.33 4.77 -19.85 -0.09 -3.42 16 20 C -0.08 -2.45 8.85 22.26 0.20 -2.25 16 21 C -0.21 -5.68 9.04 22.36 0.20 -5.48 16 22 C 0.11 2.90 6.69 22.50 0.15 3.05 16 23 O -0.33 -7.56 10.50 -92.48 -0.97 -8.54 16 24 C 0.02 0.28 9.81 113.37 1.11 1.40 16 25 C -0.16 -3.59 9.99 22.36 0.22 -3.37 16 26 C -0.07 -1.47 9.66 22.25 0.22 -1.26 16 27 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.02 0.80 7.17 -2.39 -0.02 0.78 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.61 7.12 -2.39 -0.02 1.59 16 32 H 0.40 14.41 8.54 -92.71 -0.79 13.62 16 33 H 0.07 3.70 6.07 -2.38 -0.01 3.68 16 34 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 37 H 0.11 3.77 7.15 -2.91 -0.02 3.74 16 38 H 0.14 3.14 6.30 -2.91 -0.02 3.12 16 39 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.05 0.86 7.66 -2.38 -0.02 0.84 16 41 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 42 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 43 H 0.16 2.52 7.94 -2.91 -0.02 2.50 16 Total: -1.00 -70.63 353.99 3.97 -66.66 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.21 Total: 28.85 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 4.76 Total: -16.95 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -2.02 Total: -85.25 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -1.02 Total: -37.84 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -70.63 3.97 -66.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180099038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.513 kcal (2) G-P(sol) polarization free energy of solvation -70.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds