Wall clock time and date at job start Tue Mar 31 2020 07:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42896 * 109.47235 * 2 1 4 4 C 1.52997 * 109.47268 * 120.00407 * 2 1 3 5 5 C 1.50704 * 109.47053 * 176.14136 * 4 2 1 6 6 O 1.21279 * 120.00370 * 5.43069 * 5 4 2 7 7 N 1.34777 * 119.99760 * 185.43681 * 5 4 2 8 8 C 1.46504 * 119.99649 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47120 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47499 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47582 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99666 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00187 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00047 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00306 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46942 * 89.99717 * 15 13 11 17 17 H 1.48496 * 109.47401 * 209.99851 * 15 13 11 18 18 H 1.48501 * 109.46576 * 329.99961 * 15 13 11 19 19 C 1.50704 * 109.47049 * 239.99936 * 2 1 3 20 20 C 1.38238 * 119.99727 * 89.99761 * 19 2 1 21 21 C 1.38231 * 120.00148 * 180.02562 * 20 19 2 22 22 C 1.38241 * 120.00099 * 359.95619 * 21 20 19 23 23 C 1.38240 * 119.99474 * 0.28173 * 22 21 20 24 24 C 1.38231 * 120.00464 * 270.02271 * 19 2 1 25 25 H 1.09009 * 109.47165 * 184.94977 * 1 2 3 26 26 H 1.09004 * 109.46848 * 304.94448 * 1 2 3 27 27 H 1.09004 * 109.47505 * 64.94677 * 1 2 3 28 28 H 0.96705 * 114.00355 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47095 * 296.13661 * 4 2 1 30 30 H 1.08996 * 109.47365 * 56.14148 * 4 2 1 31 31 H 0.96997 * 120.00607 * 359.97438 * 7 5 4 32 32 H 1.08999 * 109.47062 * 299.98992 * 8 7 5 33 33 H 1.09003 * 109.47515 * 59.99912 * 8 7 5 34 34 H 1.09003 * 109.47314 * 299.99933 * 9 8 7 35 35 H 1.09002 * 109.47108 * 59.99512 * 9 8 7 36 36 H 1.08995 * 109.47138 * 300.00144 * 10 9 8 37 37 H 1.09002 * 109.47146 * 59.99771 * 10 9 8 38 38 H 0.97001 * 120.00054 * 179.97438 * 14 13 11 39 39 H 1.07997 * 120.00026 * 0.02562 * 20 19 2 40 40 H 1.07999 * 120.00038 * 179.97438 * 21 20 19 41 41 H 1.07996 * 120.00124 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.99447 * 179.72623 * 23 22 21 43 43 H 1.08000 * 119.99539 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5440 -0.8046 1.2022 6 8 4.1547 -0.2488 0.3141 7 7 4.2103 -1.4970 2.1472 8 6 5.6724 -1.5775 2.1019 9 6 6.1739 -2.4149 3.2801 10 6 7.7007 -2.4996 3.2325 11 6 8.1947 -3.3239 4.3934 12 1 7.4899 -3.7456 5.0948 13 6 9.5461 -3.5405 4.5595 14 7 9.9771 -4.2603 5.5723 15 14 10.7650 -2.8117 3.3460 16 1 11.1770 -1.4621 3.8084 17 1 11.9590 -3.6899 3.2558 18 1 10.1278 -2.7038 2.0090 19 6 2.0323 -0.7104 -1.2305 20 6 2.2626 0.0005 -2.3934 21 6 2.7228 -0.6511 -3.5223 22 6 2.9537 -2.0137 -3.4880 23 6 2.7187 -2.7254 -2.3265 24 6 2.2622 -2.0731 -1.1965 25 1 -0.3634 -1.0239 0.0887 26 1 -0.3633 0.5887 0.8424 27 1 -0.3634 0.4352 -0.9310 28 1 2.9703 1.4236 -0.0004 29 1 1.7343 -0.1691 2.1378 30 1 1.6213 -1.7271 1.2844 31 1 3.7219 -1.9414 2.8578 32 1 5.9818 -2.0440 1.1666 33 1 6.0937 -0.5741 2.1644 34 1 5.8645 -1.9482 4.2154 35 1 5.7525 -3.4183 3.2181 36 1 8.0097 -2.9665 2.2974 37 1 8.1223 -1.4963 3.2943 38 1 10.9279 -4.4130 5.6889 39 1 2.0830 1.0651 -2.4200 40 1 2.9024 -0.0957 -4.4309 41 1 3.3129 -2.5229 -4.3701 42 1 2.8948 -3.7907 -2.3010 43 1 2.0823 -2.6285 -0.2879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182382044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:03 Heat of formation + Delta-G solvation = -79.873069 kcal Electronic energy + Delta-G solvation = -23067.541750 eV Core-core repulsion = 19690.922233 eV Total energy + Delta-G solvation = -3376.619517 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73755 -38.92833 -37.11097 -35.47821 -33.44391 -32.99924 -31.54840 -30.93283 -29.90661 -28.75075 -26.79048 -23.54584 -22.87787 -22.43597 -20.93366 -20.51785 -19.80505 -17.87393 -17.14860 -16.82291 -16.48926 -15.80133 -15.68038 -14.95619 -14.84566 -14.55532 -14.30228 -14.15392 -13.86548 -13.46098 -13.03302 -12.79629 -12.73661 -12.62836 -12.37405 -12.21290 -11.99333 -11.87990 -11.80539 -11.34417 -11.12481 -10.92429 -10.91344 -10.27851 -10.18607 -10.01896 -9.81556 -9.60955 -9.26147 -8.97170 -8.93618 -8.71765 -8.58386 -6.09176 -4.08150 1.29073 1.37032 2.62451 3.23221 3.29071 3.36795 3.40801 3.71833 4.03413 4.39205 4.41796 4.44717 4.63591 4.87278 4.93070 5.01848 5.09104 5.23768 5.24903 5.30034 5.40515 5.43413 5.52325 5.59021 5.61515 5.66715 5.86852 5.91947 5.96723 5.97389 6.28701 6.39344 6.39767 6.45524 6.50149 6.63597 6.74519 6.94435 7.18767 7.32282 7.53338 7.58501 7.73310 8.24801 8.47150 8.94372 9.53046 11.04053 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.003175 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.835422 B = 8815.476903 C = 9408.536343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.191 3.809 3 O -0.558 6.558 4 C -0.175 4.175 5 C 0.510 3.490 6 O -0.539 6.539 7 N -0.724 5.724 8 C 0.114 3.886 9 C -0.113 4.113 10 C -0.011 4.011 11 C -0.523 4.523 12 H 0.072 0.928 13 C 0.067 3.933 14 N -0.903 5.903 15 Si 0.880 3.120 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.090 4.090 20 C -0.099 4.099 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.115 4.115 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.389 0.611 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.400 0.600 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.018 0.982 37 H 0.014 0.986 38 H 0.264 0.736 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.815 6.661 -14.242 26.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.149 3.851 3 O -0.369 6.369 4 C -0.215 4.215 5 C 0.296 3.704 6 O -0.418 6.418 7 N -0.374 5.374 8 C -0.008 4.008 9 C -0.151 4.151 10 C -0.049 4.049 11 C -0.561 4.561 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.542 5.542 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.090 4.090 20 C -0.117 4.117 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.133 4.133 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.242 0.758 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.234 0.766 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.810 7.116 -14.786 26.502 hybrid contribution 1.320 -0.215 -0.081 1.340 sum -19.490 6.901 -14.867 25.466 Atomic orbital electron populations 1.21764 0.91485 1.02566 1.03419 1.19624 0.94157 0.82054 0.89255 1.86393 1.29235 1.24612 1.96657 1.22579 0.93474 1.03930 1.01520 1.20509 0.89628 0.78650 0.81606 1.90630 1.69765 1.46226 1.35135 1.46177 1.08802 1.53380 1.29070 1.21651 0.77787 1.01011 1.00387 1.21704 0.99346 0.98522 0.95548 1.19497 0.90542 0.96964 0.97872 1.21090 0.92896 1.31970 1.10116 0.91018 1.25026 0.98483 0.94701 0.95241 1.69912 1.14861 1.39558 1.29832 0.86778 0.80827 0.79253 0.82461 1.20211 1.21323 1.18932 1.20276 0.99170 0.94001 0.95592 1.20882 0.98612 0.99977 0.92201 1.21110 0.99744 0.94689 0.98319 1.21118 1.00437 0.94531 0.98102 1.21079 0.99515 0.99805 0.93213 1.20958 1.00013 0.94030 0.98258 0.90975 0.91265 0.91418 0.75789 0.87602 0.87999 0.76634 0.91803 0.91794 0.92124 0.92138 0.96348 0.96771 0.92665 0.85802 0.86330 0.86404 0.86282 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.82 37.15 0.33 -0.75 16 2 C 0.19 1.95 0.95 -91.77 -0.09 1.86 16 3 O -0.56 -6.73 11.95 -52.48 -0.63 -7.36 16 4 C -0.17 -1.59 4.44 -27.88 -0.12 -1.72 16 5 C 0.51 6.46 6.57 -10.98 -0.07 6.39 16 6 O -0.54 -8.55 12.77 -11.69 -0.15 -8.70 16 7 N -0.72 -9.11 5.56 -60.29 -0.33 -9.44 16 8 C 0.11 1.82 5.67 -4.04 -0.02 1.80 16 9 C -0.11 -2.06 5.27 -26.73 -0.14 -2.20 16 10 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 11 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 12 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 13 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 14 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 15 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 19 C -0.09 -1.04 3.16 -104.62 -0.33 -1.37 16 20 C -0.10 -1.15 9.35 -39.58 -0.37 -1.52 16 21 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 22 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 23 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 24 C -0.11 -1.29 8.31 -39.59 -0.33 -1.62 16 25 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.39 4.99 6.69 45.56 0.30 5.29 16 29 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.70 6.74 -51.93 -0.35 0.35 16 31 H 0.40 3.98 8.47 -40.82 -0.35 3.63 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 37 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.12 1.37 7.48 -52.49 -0.39 0.98 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 42 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 43 H 0.12 1.12 6.21 -52.49 -0.33 0.80 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -32.82 350.30 -8.73 -41.54 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.11 Total: 6.33 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -2.88 Total: -17.79 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.44 Total: -36.30 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.78 Total: -16.06 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.82 -8.73 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182382044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.331 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds