Wall clock time and date at job start Tue Mar 31 2020 07:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42896 * 109.47235 * 2 1 4 4 C 1.52997 * 109.47268 * 120.00407 * 2 1 3 5 5 C 1.50704 * 109.47053 * 176.14136 * 4 2 1 6 6 O 1.21279 * 120.00370 * 5.43069 * 5 4 2 7 7 N 1.34777 * 119.99760 * 185.43681 * 5 4 2 8 8 C 1.46504 * 119.99649 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47120 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47499 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47582 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99666 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00187 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00047 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00306 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46942 * 89.99717 * 15 13 11 17 17 H 1.48496 * 109.47401 * 209.99851 * 15 13 11 18 18 H 1.48501 * 109.46576 * 329.99961 * 15 13 11 19 19 C 1.50704 * 109.47049 * 239.99936 * 2 1 3 20 20 C 1.38238 * 119.99727 * 89.99761 * 19 2 1 21 21 C 1.38231 * 120.00148 * 180.02562 * 20 19 2 22 22 C 1.38241 * 120.00099 * 359.95619 * 21 20 19 23 23 C 1.38240 * 119.99474 * 0.28173 * 22 21 20 24 24 C 1.38231 * 120.00464 * 270.02271 * 19 2 1 25 25 H 1.09009 * 109.47165 * 184.94977 * 1 2 3 26 26 H 1.09004 * 109.46848 * 304.94448 * 1 2 3 27 27 H 1.09004 * 109.47505 * 64.94677 * 1 2 3 28 28 H 0.96705 * 114.00355 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47095 * 296.13661 * 4 2 1 30 30 H 1.08996 * 109.47365 * 56.14148 * 4 2 1 31 31 H 0.96997 * 120.00607 * 359.97438 * 7 5 4 32 32 H 1.08999 * 109.47062 * 299.98992 * 8 7 5 33 33 H 1.09003 * 109.47515 * 59.99912 * 8 7 5 34 34 H 1.09003 * 109.47314 * 299.99933 * 9 8 7 35 35 H 1.09002 * 109.47108 * 59.99512 * 9 8 7 36 36 H 1.08995 * 109.47138 * 300.00144 * 10 9 8 37 37 H 1.09002 * 109.47146 * 59.99771 * 10 9 8 38 38 H 0.97001 * 120.00054 * 179.97438 * 14 13 11 39 39 H 1.07997 * 120.00026 * 0.02562 * 20 19 2 40 40 H 1.07999 * 120.00038 * 179.97438 * 21 20 19 41 41 H 1.07996 * 120.00124 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.99447 * 179.72623 * 23 22 21 43 43 H 1.08000 * 119.99539 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5440 -0.8046 1.2022 6 8 4.1547 -0.2488 0.3141 7 7 4.2103 -1.4970 2.1472 8 6 5.6724 -1.5775 2.1019 9 6 6.1739 -2.4149 3.2801 10 6 7.7007 -2.4996 3.2325 11 6 8.1947 -3.3239 4.3934 12 1 7.4899 -3.7456 5.0948 13 6 9.5461 -3.5405 4.5595 14 7 9.9771 -4.2603 5.5723 15 14 10.7650 -2.8117 3.3460 16 1 11.1770 -1.4621 3.8084 17 1 11.9590 -3.6899 3.2558 18 1 10.1278 -2.7038 2.0090 19 6 2.0323 -0.7104 -1.2305 20 6 2.2626 0.0005 -2.3934 21 6 2.7228 -0.6511 -3.5223 22 6 2.9537 -2.0137 -3.4880 23 6 2.7187 -2.7254 -2.3265 24 6 2.2622 -2.0731 -1.1965 25 1 -0.3634 -1.0239 0.0887 26 1 -0.3633 0.5887 0.8424 27 1 -0.3634 0.4352 -0.9310 28 1 2.9703 1.4236 -0.0004 29 1 1.7343 -0.1691 2.1378 30 1 1.6213 -1.7271 1.2844 31 1 3.7219 -1.9414 2.8578 32 1 5.9818 -2.0440 1.1666 33 1 6.0937 -0.5741 2.1644 34 1 5.8645 -1.9482 4.2154 35 1 5.7525 -3.4183 3.2181 36 1 8.0097 -2.9665 2.2974 37 1 8.1223 -1.4963 3.2943 38 1 10.9279 -4.4130 5.6889 39 1 2.0830 1.0651 -2.4200 40 1 2.9024 -0.0957 -4.4309 41 1 3.3129 -2.5229 -4.3701 42 1 2.8948 -3.7907 -2.3010 43 1 2.0823 -2.6285 -0.2879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182382044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:03 Heat of formation + Delta-G solvation = -101.413043 kcal Electronic energy + Delta-G solvation = -23068.475793 eV Core-core repulsion = 19690.922233 eV Total energy + Delta-G solvation = -3377.553560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.62292 -39.86070 -37.98506 -36.83573 -35.14180 -33.95208 -33.23031 -31.74943 -30.76443 -29.75945 -28.23595 -24.76195 -24.04427 -23.30801 -22.24791 -21.67389 -20.86006 -18.99028 -18.67883 -17.95006 -17.48685 -16.88416 -16.74051 -16.26992 -15.94605 -15.68823 -15.48277 -15.21819 -14.87156 -14.78013 -14.29581 -13.96140 -13.83782 -13.79561 -13.40964 -13.24193 -13.04226 -12.80422 -12.72938 -12.66420 -12.62744 -12.13081 -11.93549 -11.79338 -11.70150 -11.60472 -11.34399 -11.01116 -10.82097 -10.77461 -10.06549 -9.78143 -9.54851 -8.30686 -6.34547 0.48174 0.53666 1.35541 1.37254 1.48756 1.66068 2.22744 2.34971 2.90137 3.05153 3.26599 3.61274 3.69016 3.83254 4.08501 4.13300 4.14963 4.19659 4.26520 4.40135 4.49942 4.59778 4.62156 4.65311 4.75159 4.88200 4.89819 4.95418 4.96413 5.02773 5.14495 5.16938 5.28583 5.39940 5.50545 5.54677 5.58039 5.64041 5.64212 5.68080 6.14957 6.26186 6.58490 6.67674 6.73853 7.29203 7.30618 8.85757 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.003175 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.835422 B = 8815.476903 C = 9408.536343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.184 3.816 3 O -0.569 6.569 4 C -0.166 4.166 5 C 0.508 3.492 6 O -0.573 6.573 7 N -0.717 5.717 8 C 0.130 3.870 9 C -0.100 4.100 10 C -0.012 4.012 11 C -0.530 4.530 12 H 0.038 0.962 13 C 0.005 3.995 14 N -0.950 5.950 15 Si 0.946 3.054 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.249 1.249 19 C -0.097 4.097 20 C -0.118 4.118 21 C -0.130 4.130 22 C -0.136 4.136 23 C -0.132 4.132 24 C -0.127 4.127 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.383 0.617 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.415 0.585 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.019 0.981 37 H 0.018 0.982 38 H 0.266 0.734 39 H 0.121 0.879 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.945 7.013 -15.185 27.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.143 3.857 3 O -0.379 6.379 4 C -0.206 4.206 5 C 0.296 3.704 6 O -0.453 6.453 7 N -0.369 5.369 8 C 0.005 3.995 9 C -0.138 4.138 10 C -0.050 4.050 11 C -0.569 4.569 12 H 0.057 0.943 13 C -0.192 4.192 14 N -0.591 5.591 15 Si 0.770 3.230 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.173 1.173 19 C -0.097 4.097 20 C -0.136 4.136 21 C -0.148 4.148 22 C -0.154 4.154 23 C -0.149 4.149 24 C -0.145 4.145 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.235 0.765 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.251 0.749 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.988 7.464 -15.721 28.042 hybrid contribution 1.616 -0.354 0.245 1.672 sum -20.372 7.110 -15.477 26.554 Atomic orbital electron populations 1.21791 0.89703 1.04004 1.03470 1.19880 0.95395 0.81218 0.89218 1.86392 1.28696 1.26081 1.96734 1.22603 0.90426 1.05809 1.01746 1.21120 0.91044 0.77563 0.80657 1.90628 1.70778 1.47452 1.36438 1.46001 1.07366 1.53689 1.29807 1.21225 0.79933 0.99760 0.98542 1.21474 0.96081 0.99404 0.96849 1.19462 0.93963 0.95974 0.95613 1.21469 0.92574 1.31948 1.10860 0.94346 1.25972 1.00783 0.95240 0.97178 1.70056 1.15479 1.41487 1.32068 0.85715 0.78182 0.78610 0.80509 1.19239 1.20978 1.17274 1.20483 0.98976 0.94314 0.95968 1.21044 0.99515 1.00133 0.92958 1.21384 0.99472 0.95136 0.98834 1.21413 1.00419 0.94647 0.98883 1.21395 0.99401 1.00741 0.93408 1.21201 1.00152 0.94133 0.98991 0.88980 0.90340 0.92147 0.76497 0.85556 0.85119 0.74881 0.92877 0.92623 0.91713 0.91732 0.96286 0.96368 0.92489 0.86061 0.84774 0.84641 0.84881 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.82 71.98 0.64 -1.16 16 2 C 0.18 3.41 0.95 -11.54 -0.01 3.40 16 3 O -0.57 -13.20 11.95 -132.49 -1.58 -14.79 16 4 C -0.17 -2.53 4.44 29.85 0.13 -2.39 16 5 C 0.51 11.80 6.57 87.66 0.58 12.37 16 6 O -0.57 -17.55 12.77 13.46 0.17 -17.38 16 7 N -0.72 -16.35 5.56 -463.05 -2.57 -18.92 16 8 C 0.13 3.91 5.67 86.38 0.49 4.40 16 9 C -0.10 -3.50 5.27 30.59 0.16 -3.34 16 10 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 11 C -0.53 -29.89 9.66 25.60 0.25 -29.64 16 12 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 13 C 0.01 0.30 5.47 84.65 0.46 0.76 16 14 N -0.95 -59.13 13.96 21.44 0.30 -58.84 16 15 Si 0.95 44.26 27.47 68.60 1.88 46.14 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 19 C -0.10 -2.11 3.16 -19.86 -0.06 -2.17 16 20 C -0.12 -2.73 9.35 22.27 0.21 -2.52 16 21 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 22 C -0.14 -2.78 10.05 22.27 0.22 -2.56 16 23 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 24 C -0.13 -2.64 8.31 22.27 0.18 -2.45 16 25 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.38 9.75 6.69 -74.05 -0.50 9.25 16 29 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.13 1.25 6.74 -2.39 -0.02 1.24 16 31 H 0.41 7.01 8.47 -92.71 -0.79 6.23 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.02 0.85 7.20 -2.39 -0.02 0.84 16 37 H 0.02 0.80 7.57 -2.39 -0.02 0.79 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.12 2.72 7.48 -2.91 -0.02 2.70 16 40 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 43 H 0.13 2.18 6.21 -2.91 -0.02 2.16 16 Total: -1.00 -71.43 350.30 1.69 -69.74 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.33 Total: 24.84 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 3.82 Total: -30.80 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -2.27 Total: -77.75 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.41 Total: -32.16 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.14 kcal Total: -71.43 1.69 -69.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182382044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.670 kcal (2) G-P(sol) polarization free energy of solvation -71.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds