Wall clock time and date at job start Tue Mar 31 2020 07:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47217 * 2 1 4 4 H 1.09003 * 109.46840 * 304.99949 * 3 2 1 5 5 C 1.52999 * 109.47201 * 64.99751 * 3 2 1 6 6 C 1.52997 * 109.47248 * 185.00319 * 3 2 1 7 7 H 1.09003 * 109.46521 * 299.99980 * 6 3 2 8 8 C 1.52997 * 109.47280 * 59.99925 * 6 3 2 9 9 N 1.46497 * 109.47040 * 180.02562 * 6 3 2 10 10 C 1.34774 * 120.00223 * 154.99999 * 9 6 3 11 11 O 1.21600 * 119.99694 * 359.97438 * 10 9 6 12 12 C 1.47535 * 120.00217 * 179.97438 * 10 9 6 13 13 C 1.39666 * 120.20000 * 0.02562 * 12 10 9 14 14 C 1.37826 * 119.92254 * 179.97438 * 13 12 10 15 15 C 1.38571 * 120.32198 * 359.97438 * 14 13 12 16 16 C 1.38025 * 120.40291 * 0.02562 * 15 14 13 17 17 C 1.38831 * 120.07201 * 359.97438 * 16 15 14 18 18 O 1.35518 * 120.16239 * 180.02562 * 17 16 15 19 19 C 1.34818 * 117.00205 * 354.39162 * 18 17 16 20 20 H 1.08011 * 119.99422 * 5.05603 * 19 18 17 21 21 C 1.38693 * 120.00642 * 185.05484 * 19 18 17 22 22 N 1.31518 * 120.00332 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99716 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46910 * 89.99807 * 23 21 19 25 25 H 1.48498 * 109.46957 * 209.99907 * 23 21 19 26 26 H 1.48498 * 109.47151 * 330.00281 * 23 21 19 27 27 H 1.09000 * 109.47434 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47134 * 300.00172 * 1 2 3 29 29 H 1.09004 * 109.47196 * 60.00226 * 1 2 3 30 30 H 1.09001 * 109.47139 * 240.00038 * 2 1 3 31 31 H 1.08990 * 109.46899 * 120.00191 * 2 1 3 32 32 H 1.09003 * 109.46936 * 59.99794 * 5 3 2 33 33 H 1.08997 * 109.47258 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.47460 * 300.00178 * 5 3 2 35 35 H 1.08998 * 109.46807 * 180.02562 * 8 6 3 36 36 H 1.08997 * 109.47098 * 299.99904 * 8 6 3 37 37 H 1.08989 * 109.47165 * 60.00433 * 8 6 3 38 38 H 0.97004 * 120.00311 * 334.99181 * 9 6 3 39 39 H 1.07997 * 120.03252 * 359.97438 * 13 12 10 40 40 H 1.07991 * 119.83480 * 180.02562 * 14 13 12 41 41 H 1.07999 * 119.79485 * 180.27999 * 15 14 13 42 42 H 1.08003 * 119.96584 * 180.02562 * 16 15 14 43 43 H 0.96997 * 120.00041 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4443 -0.1258 7 1 3.9994 0.9052 0.7160 8 6 3.9696 0.7603 -1.4331 9 7 4.0532 2.8255 -0.1252 10 6 5.3119 3.0951 0.2741 11 8 6.0420 2.1918 0.6342 12 6 5.8039 4.4860 0.2742 13 6 4.9686 5.5266 -0.1382 14 6 5.4340 6.8240 -0.1353 15 6 6.7278 7.1022 0.2755 16 6 7.5646 6.0841 0.6857 17 6 7.1130 4.7713 0.6894 18 8 7.9329 3.7703 1.0922 19 6 9.2112 4.0991 1.3667 20 1 9.5201 5.1338 1.3408 21 6 10.1297 3.1089 1.6822 22 7 11.3766 3.4298 1.9504 23 14 9.5956 1.3194 1.7262 24 1 9.7792 0.7149 0.3822 25 1 10.4188 0.5814 2.7176 26 1 8.1643 1.2394 2.1135 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0698 1.5875 2.1491 33 1 1.9982 3.1543 1.3071 34 1 0.5489 2.1253 1.3969 35 1 5.0559 0.7613 -1.5225 36 1 3.6063 -0.2673 -1.4331 37 1 3.5350 1.2993 -2.2749 38 1 3.4707 3.5461 -0.4122 39 1 3.9593 5.3149 -0.4588 40 1 4.7868 7.6276 -0.4540 41 1 7.0822 8.1224 0.2787 42 1 8.5716 6.3090 1.0049 43 1 12.0190 2.7372 2.1707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194301561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:23 Heat of formation + Delta-G solvation = -53.986615 kcal Electronic energy + Delta-G solvation = -23612.876572 eV Core-core repulsion = 20237.379576 eV Total energy + Delta-G solvation = -3375.496996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.90401 -38.74155 -37.09461 -36.47971 -33.72463 -32.43999 -31.23969 -29.53400 -29.41414 -29.17818 -25.31778 -24.57253 -23.75845 -22.23330 -21.17890 -20.18633 -19.81938 -17.89390 -17.75566 -16.38413 -15.96401 -15.18189 -14.88051 -14.57604 -14.43436 -14.15487 -14.08677 -13.75640 -13.62725 -13.37572 -13.28984 -12.91851 -12.36936 -12.34144 -12.24379 -12.15636 -11.88773 -11.68255 -11.45060 -11.30819 -11.24272 -10.87683 -10.82686 -10.71565 -10.64846 -10.47611 -10.03692 -9.59508 -9.00396 -8.88147 -8.67656 -8.36435 -7.46683 -6.46143 -4.11186 1.59449 2.19849 3.32334 3.38848 3.56572 3.61043 3.67564 4.36703 4.53258 4.57100 4.72141 4.74976 4.79556 5.09869 5.12539 5.27032 5.29692 5.37144 5.40754 5.45327 5.49131 5.61942 5.65565 5.75059 5.80406 5.84561 5.85071 5.90860 5.92581 6.05144 6.09139 6.21174 6.28560 6.38768 6.40723 6.56856 6.83442 6.91023 7.02706 7.15803 7.49121 7.69025 7.95934 8.01804 8.88516 8.94038 9.53122 10.59044 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.005098 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.467170 B = 5491.429845 C = 7014.948568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.097 4.097 4 H 0.072 0.928 5 C -0.148 4.148 6 C 0.148 3.852 7 H 0.086 0.914 8 C -0.165 4.165 9 N -0.735 5.735 10 C 0.561 3.439 11 O -0.519 6.519 12 C -0.226 4.226 13 C -0.041 4.041 14 C -0.222 4.222 15 C -0.051 4.051 16 C -0.227 4.227 17 C 0.201 3.799 18 O -0.166 6.166 19 C -0.397 4.397 20 H 0.108 0.892 21 C 0.072 3.928 22 N -0.870 5.870 23 Si 0.900 3.100 24 H -0.274 1.274 25 H -0.287 1.287 26 H -0.238 1.238 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.392 0.608 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.138 0.862 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.691 -1.148 -5.047 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.116 4.116 4 H 0.091 0.909 5 C -0.206 4.206 6 C 0.043 3.957 7 H 0.104 0.896 8 C -0.224 4.224 9 N -0.389 5.389 10 C 0.351 3.649 11 O -0.395 6.395 12 C -0.231 4.231 13 C -0.060 4.060 14 C -0.241 4.241 15 C -0.070 4.070 16 C -0.247 4.247 17 C 0.143 3.857 18 O -0.066 6.066 19 C -0.472 4.472 20 H 0.125 0.875 21 C -0.133 4.133 22 N -0.506 5.506 23 Si 0.725 3.275 24 H -0.200 1.200 25 H -0.213 1.213 26 H -0.161 1.161 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.227 0.773 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.155 0.845 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.915 -2.172 -4.649 19.599 hybrid contribution -0.195 -0.117 -0.160 0.278 sum -19.110 -2.289 -4.809 19.839 Atomic orbital electron populations 1.21810 0.95842 1.01448 1.01831 1.21613 0.95799 0.95849 1.02586 1.21429 0.94441 0.96929 0.98827 0.90920 1.21869 1.00825 1.00892 0.96970 1.20856 0.92691 0.83319 0.98792 0.89638 1.22247 1.02657 1.00191 0.97268 1.45943 1.14458 1.08462 1.70063 1.18184 0.81027 0.88812 0.76858 1.90850 1.55246 1.46986 1.46386 1.18898 0.94540 0.92914 1.16734 1.20756 0.97186 0.92268 0.95773 1.20532 0.96963 0.95945 1.10612 1.20959 0.93282 0.98134 0.94622 1.21287 1.02195 0.92035 1.09133 1.19031 0.89189 0.87814 0.89630 1.83783 1.20850 1.31977 1.69949 1.20929 0.81384 0.96865 1.47986 0.87473 1.24486 0.93777 1.00421 0.94659 1.69638 1.02305 1.35374 1.43297 0.86201 0.81187 0.81786 0.78347 1.19969 1.21280 1.16089 0.92905 0.92500 0.92863 0.91340 0.91723 0.92547 0.92380 0.92561 0.91850 0.91825 0.92782 0.77331 0.86910 0.87054 0.86867 0.84455 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.12 -1.04 5.19 -26.73 -0.14 -1.18 16 3 C -0.10 -0.94 2.02 -90.62 -0.18 -1.12 16 4 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 5 C -0.15 -1.44 8.79 37.16 0.33 -1.12 16 6 C 0.15 1.95 2.16 -67.94 -0.15 1.80 16 7 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 8 C -0.17 -2.08 9.14 37.16 0.34 -1.74 16 9 N -0.74 -10.80 4.33 -54.85 -0.24 -11.04 16 10 C 0.56 11.35 7.73 -12.47 -0.10 11.25 16 11 O -0.52 -12.90 14.83 -16.58 -0.25 -13.15 16 12 C -0.23 -4.60 5.89 -104.81 -0.62 -5.22 16 13 C -0.04 -0.66 9.54 -39.20 -0.37 -1.03 16 14 C -0.22 -3.44 10.02 -39.61 -0.40 -3.84 16 15 C -0.05 -0.88 10.03 -39.54 -0.40 -1.28 16 16 C -0.23 -4.83 9.16 -39.44 -0.36 -5.19 16 17 C 0.20 4.78 6.66 -38.60 -0.26 4.52 16 18 O -0.17 -4.59 6.67 -21.06 -0.14 -4.73 16 19 C -0.40 -11.44 9.95 30.90 0.31 -11.13 16 20 H 0.11 3.07 5.44 -52.48 -0.29 2.79 16 21 C 0.07 2.09 5.49 -17.52 -0.10 1.99 16 22 N -0.87 -25.47 13.96 55.48 0.77 -24.70 16 23 Si 0.90 23.41 28.62 -169.99 -4.86 18.54 16 24 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.24 -6.53 7.11 56.52 0.40 -6.13 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.57 6.17 -51.93 -0.32 0.25 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.59 7.44 -51.93 -0.39 0.21 16 34 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.68 6.32 -51.93 -0.33 0.35 16 37 H 0.05 0.60 8.14 -51.94 -0.42 0.18 16 38 H 0.39 4.61 6.42 -40.82 -0.26 4.35 16 39 H 0.11 1.36 6.40 -52.49 -0.34 1.02 16 40 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.14 3.03 5.64 -52.48 -0.30 2.74 16 43 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 347.12 15.07 5.23 5.23 Total: -1.00 -32.49 347.12 -7.44 -39.94 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.23 Total: 3.93 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -1.73 Total: -14.03 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.54 Total: -35.74 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.39 Total: -17.88 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.86 Total: 18.54 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.49 -7.44 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194301561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.048 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds