Wall clock time and date at job start Tue Mar 31 2020 07:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47217 * 2 1 4 4 H 1.09003 * 109.46840 * 304.99949 * 3 2 1 5 5 C 1.52999 * 109.47201 * 64.99751 * 3 2 1 6 6 C 1.52997 * 109.47248 * 185.00319 * 3 2 1 7 7 H 1.09003 * 109.46521 * 299.99980 * 6 3 2 8 8 C 1.52997 * 109.47280 * 59.99925 * 6 3 2 9 9 N 1.46497 * 109.47040 * 180.02562 * 6 3 2 10 10 C 1.34774 * 120.00223 * 154.99999 * 9 6 3 11 11 O 1.21600 * 119.99694 * 359.97438 * 10 9 6 12 12 C 1.47535 * 120.00217 * 179.97438 * 10 9 6 13 13 C 1.39666 * 120.20000 * 0.02562 * 12 10 9 14 14 C 1.37826 * 119.92254 * 179.97438 * 13 12 10 15 15 C 1.38571 * 120.32198 * 359.97438 * 14 13 12 16 16 C 1.38025 * 120.40291 * 0.02562 * 15 14 13 17 17 C 1.38831 * 120.07201 * 359.97438 * 16 15 14 18 18 O 1.35518 * 120.16239 * 180.02562 * 17 16 15 19 19 C 1.34818 * 117.00205 * 354.39162 * 18 17 16 20 20 H 1.08011 * 119.99422 * 5.05603 * 19 18 17 21 21 C 1.38693 * 120.00642 * 185.05484 * 19 18 17 22 22 N 1.31518 * 120.00332 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99716 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46910 * 89.99807 * 23 21 19 25 25 H 1.48498 * 109.46957 * 209.99907 * 23 21 19 26 26 H 1.48498 * 109.47151 * 330.00281 * 23 21 19 27 27 H 1.09000 * 109.47434 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47134 * 300.00172 * 1 2 3 29 29 H 1.09004 * 109.47196 * 60.00226 * 1 2 3 30 30 H 1.09001 * 109.47139 * 240.00038 * 2 1 3 31 31 H 1.08990 * 109.46899 * 120.00191 * 2 1 3 32 32 H 1.09003 * 109.46936 * 59.99794 * 5 3 2 33 33 H 1.08997 * 109.47258 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.47460 * 300.00178 * 5 3 2 35 35 H 1.08998 * 109.46807 * 180.02562 * 8 6 3 36 36 H 1.08997 * 109.47098 * 299.99904 * 8 6 3 37 37 H 1.08989 * 109.47165 * 60.00433 * 8 6 3 38 38 H 0.97004 * 120.00311 * 334.99181 * 9 6 3 39 39 H 1.07997 * 120.03252 * 359.97438 * 13 12 10 40 40 H 1.07991 * 119.83480 * 180.02562 * 14 13 12 41 41 H 1.07999 * 119.79485 * 180.27999 * 15 14 13 42 42 H 1.08003 * 119.96584 * 180.02562 * 16 15 14 43 43 H 0.96997 * 120.00041 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4443 -0.1258 7 1 3.9994 0.9052 0.7160 8 6 3.9696 0.7603 -1.4331 9 7 4.0532 2.8255 -0.1252 10 6 5.3119 3.0951 0.2741 11 8 6.0420 2.1918 0.6342 12 6 5.8039 4.4860 0.2742 13 6 4.9686 5.5266 -0.1382 14 6 5.4340 6.8240 -0.1353 15 6 6.7278 7.1022 0.2755 16 6 7.5646 6.0841 0.6857 17 6 7.1130 4.7713 0.6894 18 8 7.9329 3.7703 1.0922 19 6 9.2112 4.0991 1.3667 20 1 9.5201 5.1338 1.3408 21 6 10.1297 3.1089 1.6822 22 7 11.3766 3.4298 1.9504 23 14 9.5956 1.3194 1.7262 24 1 9.7792 0.7149 0.3822 25 1 10.4188 0.5814 2.7176 26 1 8.1643 1.2394 2.1135 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0698 1.5875 2.1491 33 1 1.9982 3.1543 1.3071 34 1 0.5489 2.1253 1.3969 35 1 5.0559 0.7613 -1.5225 36 1 3.6063 -0.2673 -1.4331 37 1 3.5350 1.2993 -2.2749 38 1 3.4707 3.5461 -0.4122 39 1 3.9593 5.3149 -0.4588 40 1 4.7868 7.6276 -0.4540 41 1 7.0822 8.1224 0.2787 42 1 8.5716 6.3090 1.0049 43 1 12.0190 2.7372 2.1707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194301561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:21 Heat of formation + Delta-G solvation = -74.117412 kcal Electronic energy + Delta-G solvation = -23613.749509 eV Core-core repulsion = 20237.379576 eV Total energy + Delta-G solvation = -3376.369933 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.46162 -40.22731 -38.38598 -38.05099 -34.94151 -34.51858 -32.59197 -30.80060 -30.73621 -30.21713 -27.30850 -25.41955 -25.07989 -23.53200 -22.63948 -21.51319 -20.93593 -19.80109 -19.33471 -17.98607 -17.30704 -16.55144 -16.17043 -16.05299 -15.82263 -15.71506 -15.48537 -15.35786 -14.93390 -14.56510 -14.48483 -14.23903 -14.08107 -14.02329 -13.43411 -13.14770 -12.97601 -12.83893 -12.68178 -12.59993 -12.50905 -12.39052 -12.27565 -12.03853 -11.63978 -11.51800 -11.44471 -11.33658 -10.98319 -10.64485 -10.09774 -9.80849 -9.14560 -8.59247 -6.27732 0.06493 0.65044 1.22350 1.27823 1.56342 2.05873 2.25827 2.28389 2.75263 3.02595 3.17201 3.67102 3.91625 3.94123 4.01227 4.05185 4.25723 4.35182 4.40538 4.48598 4.52498 4.60689 4.66239 4.73142 4.78200 4.81140 4.87335 4.97338 5.06625 5.08162 5.17313 5.20866 5.22015 5.28817 5.35406 5.47566 5.50776 5.55418 5.62036 5.65414 5.69768 5.83429 6.15905 6.69471 6.78615 7.45226 7.58883 8.51420 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.005098 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.467170 B = 5491.429845 C = 7014.948568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.085 4.085 4 H 0.098 0.902 5 C -0.149 4.149 6 C 0.144 3.856 7 H 0.050 0.950 8 C -0.160 4.160 9 N -0.708 5.708 10 C 0.554 3.446 11 O -0.575 6.575 12 C -0.234 4.234 13 C -0.030 4.030 14 C -0.189 4.189 15 C -0.043 4.043 16 C -0.252 4.252 17 C 0.160 3.840 18 O -0.210 6.210 19 C -0.403 4.403 20 H 0.092 0.908 21 C 0.027 3.973 22 N -0.911 5.911 23 Si 0.955 3.045 24 H -0.277 1.277 25 H -0.265 1.265 26 H -0.268 1.268 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.023 0.977 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.411 0.589 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.151 0.849 42 H 0.114 0.886 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.573 0.629 -7.008 25.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.103 4.103 4 H 0.116 0.884 5 C -0.206 4.206 6 C 0.040 3.960 7 H 0.069 0.931 8 C -0.218 4.218 9 N -0.363 5.363 10 C 0.344 3.656 11 O -0.455 6.455 12 C -0.238 4.238 13 C -0.048 4.048 14 C -0.207 4.207 15 C -0.061 4.061 16 C -0.271 4.271 17 C 0.107 3.893 18 O -0.114 6.114 19 C -0.479 4.479 20 H 0.109 0.891 21 C -0.173 4.173 22 N -0.551 5.551 23 Si 0.779 3.221 24 H -0.203 1.203 25 H -0.189 1.189 26 H -0.192 1.192 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.249 0.751 39 H 0.183 0.817 40 H 0.185 0.815 41 H 0.168 0.832 42 H 0.132 0.868 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.882 -0.352 -6.642 24.791 hybrid contribution 0.894 -0.387 0.288 1.016 sum -22.987 -0.739 -6.354 23.861 Atomic orbital electron populations 1.21782 0.94276 1.02069 1.02430 1.21623 0.97076 0.94929 1.02290 1.21377 0.91126 0.98111 0.99735 0.88411 1.21887 1.02164 1.00310 0.96237 1.21023 0.95204 0.81907 0.97908 0.93123 1.22203 1.00150 1.01893 0.97601 1.45720 1.12649 1.09983 1.67903 1.18389 0.82228 0.88370 0.76591 1.90836 1.57197 1.48473 1.48999 1.19350 0.93825 0.94521 1.16145 1.21352 0.98641 0.91271 0.93561 1.21237 0.96223 0.97064 1.06159 1.21443 0.93549 0.98696 0.92443 1.21332 1.02333 0.92482 1.10940 1.19792 0.90350 0.88375 0.90787 1.83774 1.20368 1.33457 1.73839 1.20909 0.82726 0.96274 1.48027 0.89062 1.25014 0.94022 1.02909 0.95358 1.69679 1.02911 1.36141 1.46413 0.85424 0.79067 0.79211 0.78386 1.20269 1.18925 1.19225 0.92417 0.92308 0.91773 0.90896 0.92953 0.94484 0.92614 0.90344 0.95821 0.89821 0.90481 0.75058 0.81665 0.81503 0.83162 0.86813 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.67 71.98 0.70 -0.94 16 2 C -0.12 -1.78 5.19 30.59 0.16 -1.62 16 3 C -0.08 -1.38 2.02 -10.80 -0.02 -1.40 16 4 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 5 C -0.15 -2.49 8.79 71.98 0.63 -1.86 16 6 C 0.14 3.63 2.16 44.99 0.10 3.73 16 7 H 0.05 1.66 7.58 -2.39 -0.02 1.64 16 8 C -0.16 -3.85 9.14 71.98 0.66 -3.20 16 9 N -0.71 -19.47 4.33 -445.71 -1.93 -21.40 16 10 C 0.55 22.56 7.73 86.70 0.67 23.23 16 11 O -0.58 -30.25 14.83 16.86 0.25 -30.00 16 12 C -0.23 -9.30 5.89 -19.99 -0.12 -9.42 16 13 C -0.03 -0.81 9.54 22.52 0.21 -0.59 16 14 C -0.19 -4.65 10.02 22.25 0.22 -4.43 16 15 C -0.04 -1.33 10.03 22.30 0.22 -1.11 16 16 C -0.25 -10.86 9.16 22.36 0.20 -10.66 16 17 C 0.16 7.88 6.66 22.91 0.15 8.03 16 18 O -0.21 -12.49 6.67 0.82 0.01 -12.48 16 19 C -0.40 -25.07 9.95 67.93 0.68 -24.40 16 20 H 0.09 5.73 5.44 -2.91 -0.02 5.71 16 21 C 0.03 1.68 5.49 84.85 0.47 2.14 16 22 N -0.91 -56.52 13.96 21.62 0.30 -56.21 16 23 Si 0.95 51.90 28.62 68.60 1.96 53.86 16 24 H -0.28 -14.87 7.11 99.48 0.71 -14.16 16 25 H -0.26 -13.11 7.11 99.48 0.71 -12.41 16 26 H -0.27 -15.70 7.11 99.48 0.71 -14.99 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.63 6.56 -2.39 -0.02 0.62 16 29 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.07 1.01 6.17 -2.39 -0.01 1.00 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.95 7.44 -2.39 -0.02 0.93 16 34 H 0.08 0.99 6.57 -2.39 -0.02 0.97 16 35 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 1.66 6.32 -2.39 -0.02 1.64 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.41 7.82 6.42 -92.71 -0.59 7.23 16 39 H 0.17 2.72 6.40 -2.91 -0.02 2.70 16 40 H 0.17 2.53 8.06 -2.92 -0.02 2.51 16 41 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 42 H 0.11 5.39 5.64 -2.91 -0.02 5.37 16 43 H 0.29 16.31 8.31 -92.71 -0.77 15.54 16 Total: -1.00 -80.74 347.12 5.95 -74.79 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.42 Total: 13.93 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 4.93 Total: -22.49 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -1.63 Total: -77.61 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: 0.26 Total: -42.48 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 1.96 Total: 53.86 kcal Total: -80.74 5.95 -74.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194301561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.677 kcal (2) G-P(sol) polarization free energy of solvation -80.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds