Wall clock time and date at job start Tue Mar 31 2020 07:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46604 * 2 1 4 4 C 1.52999 * 109.46817 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.46846 * 179.97438 * 4 3 2 6 6 C 1.42905 * 113.99925 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47199 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47424 * 65.00109 * 7 6 5 9 9 C 1.34773 * 120.00154 * 180.02562 * 8 7 6 10 10 O 1.21548 * 120.00201 * 359.97438 * 9 8 7 11 11 C 1.47887 * 120.00116 * 180.02562 * 9 8 7 12 12 C 1.39923 * 120.02273 * 359.71517 * 11 9 8 13 13 C 1.38326 * 120.35871 * 179.74522 * 12 11 9 14 14 C 1.37755 * 120.40853 * 0.56468 * 13 12 11 15 15 C 1.40752 * 120.04221 * 359.68880 * 14 13 12 16 16 C 1.41438 * 120.18004 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99683 * 24.44694 * 16 15 14 18 18 C 1.39935 * 120.00027 * 204.44460 * 16 15 14 19 19 N 1.30820 * 120.00060 * 17.87968 * 18 16 15 20 20 Si 1.86798 * 119.99804 * 197.88502 * 18 16 15 21 21 H 1.48505 * 109.47353 * 89.99731 * 20 18 16 22 22 H 1.48498 * 109.46976 * 209.99993 * 20 18 16 23 23 H 1.48499 * 109.47271 * 329.99830 * 20 18 16 24 24 C 1.38990 * 120.02650 * 179.97438 * 11 9 8 25 25 H 1.08998 * 109.47880 * 60.00058 * 1 2 3 26 26 H 1.09004 * 109.47285 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47188 * 299.99620 * 1 2 3 28 28 H 1.08997 * 109.46743 * 240.00368 * 2 1 3 29 29 H 1.08996 * 109.47374 * 119.99843 * 2 1 3 30 30 H 1.08999 * 109.47382 * 59.99917 * 3 2 1 31 31 H 1.09005 * 109.47223 * 299.99910 * 3 2 1 32 32 H 1.08999 * 109.47477 * 59.99651 * 4 3 2 33 33 H 1.09005 * 109.46887 * 299.99792 * 4 3 2 34 34 H 1.08996 * 109.47043 * 59.99969 * 6 5 4 35 35 H 1.09004 * 109.46927 * 299.99979 * 6 5 4 36 36 H 1.09004 * 109.46979 * 185.00367 * 7 6 5 37 37 H 1.09006 * 109.46730 * 304.99849 * 7 6 5 38 38 H 0.97001 * 119.99564 * 0.02562 * 8 7 6 39 39 H 1.08005 * 119.82165 * 0.02562 * 12 11 9 40 40 H 1.08003 * 119.79796 * 180.27758 * 13 12 11 41 41 H 1.08003 * 119.98254 * 179.72326 * 14 13 12 42 42 H 0.97000 * 119.99984 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.20219 * 359.94582 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 8 4.0461 2.7899 -0.0012 6 6 5.4707 2.9029 -0.0013 7 6 5.8651 4.3812 -0.0013 8 7 5.4271 5.0035 1.2505 9 6 5.6677 6.3107 1.4734 10 8 6.2485 6.9732 0.6361 11 6 5.2260 6.9388 2.7373 12 6 4.5530 6.1778 3.6995 13 6 4.1415 6.7570 4.8864 14 6 4.3789 8.0919 5.1300 15 6 5.0498 8.8746 4.1717 16 6 5.2956 10.2453 4.4190 17 1 5.3450 10.6104 5.4342 18 6 5.4748 11.1283 3.3483 19 7 5.0798 10.7897 2.1480 20 14 6.2782 12.7905 3.6330 21 1 7.7473 12.6675 3.4540 22 1 5.7413 13.7733 2.6578 23 1 5.9848 13.2522 5.0136 24 6 5.4743 8.2868 2.9680 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6765 1.9564 0.8900 31 1 1.6765 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9336 0.9287 0.8892 34 1 5.8734 2.4190 -0.8910 35 1 5.8735 2.4198 0.8889 36 1 6.9479 4.4683 -0.0910 37 1 5.3892 4.8841 -0.8432 38 1 4.9639 4.4747 1.9189 39 1 4.3578 5.1315 3.5165 40 1 3.6267 6.1600 5.6247 41 1 4.0506 8.5381 6.0571 42 1 5.2043 11.4017 1.4058 43 1 5.9905 8.8788 2.2267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195109100.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:14 Heat of formation + Delta-G solvation = -89.521479 kcal Electronic energy + Delta-G solvation = -22232.156737 eV Core-core repulsion = 18855.118834 eV Total energy + Delta-G solvation = -3377.037903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.24509 -38.26292 -36.95033 -35.41667 -34.11644 -33.64855 -30.72620 -29.66988 -29.38513 -28.22742 -25.27551 -23.64522 -23.23471 -21.78058 -21.26523 -20.84164 -19.51367 -17.71843 -16.86891 -16.61770 -16.18979 -15.60452 -15.11141 -14.89274 -14.71936 -14.43515 -14.38567 -13.70195 -13.48436 -13.21448 -12.99161 -12.63212 -12.55911 -12.41649 -12.38514 -11.73393 -11.60645 -11.50815 -11.25039 -11.14637 -11.11320 -11.04330 -10.91519 -10.69172 -10.46420 -9.98585 -9.80195 -9.65283 -9.18833 -8.96641 -8.59448 -7.58777 -7.48304 -6.76722 -4.38089 2.26048 2.84742 3.09806 3.13036 3.18572 3.40708 3.76958 3.92240 3.95268 4.62460 4.66128 4.67828 4.79999 4.94922 4.98088 5.08713 5.15205 5.22038 5.32602 5.48896 5.53374 5.58542 5.64005 5.69267 5.79107 5.84271 5.95708 6.01847 6.04343 6.14074 6.32471 6.75404 6.89898 7.01842 7.04249 7.07129 7.25009 7.42070 7.74513 7.80469 7.96784 8.15221 8.23768 8.54365 8.83638 8.87246 9.01459 10.18044 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.002883 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.207944 B = 9708.349141 C =10291.798359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.121 4.121 4 C 0.061 3.939 5 O -0.383 6.383 6 C 0.052 3.948 7 C 0.124 3.876 8 N -0.732 5.732 9 C 0.563 3.437 10 O -0.549 6.549 11 C -0.127 4.127 12 C -0.216 4.216 13 C -0.098 4.098 14 C -0.212 4.212 15 C 0.098 3.902 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.783 5.783 20 Si 0.911 3.089 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.093 4.093 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.401 0.599 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.284 0.716 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.075 -17.802 -4.194 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.159 4.159 4 C -0.015 4.015 5 O -0.302 6.302 6 C -0.025 4.025 7 C 0.000 4.000 8 N -0.386 5.386 9 C 0.354 3.646 10 O -0.428 6.428 11 C -0.130 4.130 12 C -0.236 4.236 13 C -0.117 4.117 14 C -0.232 4.232 15 C 0.095 3.905 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.407 5.407 20 Si 0.735 3.265 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.113 4.113 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.237 0.763 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.804 -17.075 -5.072 18.032 hybrid contribution 0.200 0.155 0.310 0.400 sum -2.604 -16.920 -4.762 17.769 Atomic orbital electron populations 1.21758 0.95385 1.01635 1.02214 1.21437 0.96319 0.96086 1.02037 1.21566 0.93452 0.97136 1.03730 1.22518 0.95255 0.83841 0.99914 1.87979 1.20712 1.26138 1.95387 1.22779 0.81868 0.96910 1.00934 1.21252 0.99690 0.90535 0.88544 1.45858 1.61757 1.10974 1.20021 1.18844 0.77790 0.80675 0.87304 1.90688 1.42321 1.62667 1.47080 1.19474 1.04676 0.95515 0.93362 1.20351 1.09498 0.97507 0.96258 1.20431 1.00116 0.95068 0.96049 1.21095 1.06513 0.94276 1.01321 1.17607 0.88737 0.93255 0.90857 1.19586 1.43046 0.92237 0.94073 0.90083 1.25968 0.93211 1.00904 0.94552 1.69794 1.32768 1.37129 1.01038 0.86271 0.80235 0.80674 0.79325 1.19164 1.20244 1.18598 1.21643 0.99474 0.91351 0.98833 0.92582 0.92695 0.92455 0.92001 0.91879 0.90836 0.91074 0.93564 0.93417 0.91949 0.92646 0.90357 0.90985 0.76288 0.89236 0.88942 0.88646 0.90448 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.84 5.93 -26.73 -0.16 -1.00 16 3 C -0.12 -1.07 5.58 -26.73 -0.15 -1.22 16 4 C 0.06 0.57 5.94 37.16 0.22 0.79 16 5 O -0.38 -4.73 10.29 -35.23 -0.36 -5.10 16 6 C 0.05 0.56 6.07 37.16 0.23 0.78 16 7 C 0.12 1.77 6.06 -4.04 -0.02 1.75 16 8 N -0.73 -12.79 5.45 -61.24 -0.33 -13.13 16 9 C 0.56 12.79 7.77 -12.31 -0.10 12.70 16 10 O -0.55 -14.18 16.33 5.32 0.09 -14.09 16 11 C -0.13 -3.09 5.87 -105.04 -0.62 -3.71 16 12 C -0.22 -4.68 9.55 -38.92 -0.37 -5.05 16 13 C -0.10 -2.14 10.01 -39.73 -0.40 -2.54 16 14 C -0.21 -5.13 9.78 -38.81 -0.38 -5.51 16 15 C 0.10 2.64 5.57 -106.87 -0.60 2.04 16 16 C -0.46 -12.27 9.05 -37.73 -0.34 -12.61 16 17 H 0.08 2.05 7.91 -52.49 -0.42 1.63 16 18 C 0.07 1.87 5.14 -17.35 -0.09 1.78 16 19 N -0.78 -21.12 10.96 55.55 0.61 -20.51 16 20 Si 0.91 19.05 29.59 -169.99 -5.03 14.01 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 24 C -0.09 -2.53 8.24 -38.44 -0.32 -2.85 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.40 6.32 6.49 -40.82 -0.26 6.06 16 39 H 0.09 1.63 6.38 -52.48 -0.33 1.30 16 40 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 41 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 42 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 43 H 0.13 3.93 5.74 -52.49 -0.30 3.63 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -30.80 361.20 -9.10 -39.90 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.79 Total: 8.76 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -2.72 Total: -15.29 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.27 Total: -33.64 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.28 Total: -19.19 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.80 -9.10 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195109100.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.618 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds