Wall clock time and date at job start Tue Mar 31 2020 07:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46604 * 2 1 4 4 C 1.52999 * 109.46817 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.46846 * 179.97438 * 4 3 2 6 6 C 1.42905 * 113.99925 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47199 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47424 * 65.00109 * 7 6 5 9 9 C 1.34773 * 120.00154 * 180.02562 * 8 7 6 10 10 O 1.21548 * 120.00201 * 359.97438 * 9 8 7 11 11 C 1.47887 * 120.00116 * 180.02562 * 9 8 7 12 12 C 1.39923 * 120.02273 * 359.71517 * 11 9 8 13 13 C 1.38326 * 120.35871 * 179.74522 * 12 11 9 14 14 C 1.37755 * 120.40853 * 0.56468 * 13 12 11 15 15 C 1.40752 * 120.04221 * 359.68880 * 14 13 12 16 16 C 1.41438 * 120.18004 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99683 * 24.44694 * 16 15 14 18 18 C 1.39935 * 120.00027 * 204.44460 * 16 15 14 19 19 N 1.30820 * 120.00060 * 17.87968 * 18 16 15 20 20 Si 1.86798 * 119.99804 * 197.88502 * 18 16 15 21 21 H 1.48505 * 109.47353 * 89.99731 * 20 18 16 22 22 H 1.48498 * 109.46976 * 209.99993 * 20 18 16 23 23 H 1.48499 * 109.47271 * 329.99830 * 20 18 16 24 24 C 1.38990 * 120.02650 * 179.97438 * 11 9 8 25 25 H 1.08998 * 109.47880 * 60.00058 * 1 2 3 26 26 H 1.09004 * 109.47285 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47188 * 299.99620 * 1 2 3 28 28 H 1.08997 * 109.46743 * 240.00368 * 2 1 3 29 29 H 1.08996 * 109.47374 * 119.99843 * 2 1 3 30 30 H 1.08999 * 109.47382 * 59.99917 * 3 2 1 31 31 H 1.09005 * 109.47223 * 299.99910 * 3 2 1 32 32 H 1.08999 * 109.47477 * 59.99651 * 4 3 2 33 33 H 1.09005 * 109.46887 * 299.99792 * 4 3 2 34 34 H 1.08996 * 109.47043 * 59.99969 * 6 5 4 35 35 H 1.09004 * 109.46927 * 299.99979 * 6 5 4 36 36 H 1.09004 * 109.46979 * 185.00367 * 7 6 5 37 37 H 1.09006 * 109.46730 * 304.99849 * 7 6 5 38 38 H 0.97001 * 119.99564 * 0.02562 * 8 7 6 39 39 H 1.08005 * 119.82165 * 0.02562 * 12 11 9 40 40 H 1.08003 * 119.79796 * 180.27758 * 13 12 11 41 41 H 1.08003 * 119.98254 * 179.72326 * 14 13 12 42 42 H 0.97000 * 119.99984 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.20219 * 359.94582 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 8 4.0461 2.7899 -0.0012 6 6 5.4707 2.9029 -0.0013 7 6 5.8651 4.3812 -0.0013 8 7 5.4271 5.0035 1.2505 9 6 5.6677 6.3107 1.4734 10 8 6.2485 6.9732 0.6361 11 6 5.2260 6.9388 2.7373 12 6 4.5530 6.1778 3.6995 13 6 4.1415 6.7570 4.8864 14 6 4.3789 8.0919 5.1300 15 6 5.0498 8.8746 4.1717 16 6 5.2956 10.2453 4.4190 17 1 5.3450 10.6104 5.4342 18 6 5.4748 11.1283 3.3483 19 7 5.0798 10.7897 2.1480 20 14 6.2782 12.7905 3.6330 21 1 7.7473 12.6675 3.4540 22 1 5.7413 13.7733 2.6578 23 1 5.9848 13.2522 5.0136 24 6 5.4743 8.2868 2.9680 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6765 1.9564 0.8900 31 1 1.6765 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9336 0.9287 0.8892 34 1 5.8734 2.4190 -0.8910 35 1 5.8735 2.4198 0.8889 36 1 6.9479 4.4683 -0.0910 37 1 5.3892 4.8841 -0.8432 38 1 4.9639 4.4747 1.9189 39 1 4.3578 5.1315 3.5165 40 1 3.6267 6.1600 5.6247 41 1 4.0506 8.5381 6.0571 42 1 5.2043 11.4017 1.4058 43 1 5.9905 8.8788 2.2267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195109100.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:13 Heat of formation + Delta-G solvation = -108.302045 kcal Electronic energy + Delta-G solvation = -22232.971123 eV Core-core repulsion = 18855.118834 eV Total energy + Delta-G solvation = -3377.852290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.91525 -39.26526 -38.72222 -36.30882 -35.64784 -35.26051 -32.35709 -31.30011 -30.73183 -29.23918 -27.18714 -24.81139 -24.16297 -23.18592 -22.69449 -21.90390 -21.24775 -19.53323 -18.02211 -17.69421 -17.54149 -16.96224 -16.69293 -16.42313 -16.03138 -15.63930 -15.61548 -15.08996 -15.00176 -14.39519 -14.32602 -14.26457 -13.83570 -13.61539 -13.41902 -13.24750 -12.95362 -12.81324 -12.52675 -12.43400 -12.28336 -12.16420 -11.89213 -11.88802 -11.80838 -11.50902 -11.50141 -11.08402 -10.82445 -10.54136 -10.15257 -9.47107 -9.38660 -8.66508 -6.38254 0.38111 1.00676 1.36272 1.48316 1.51129 2.09739 2.19245 2.27303 2.64720 2.78954 3.69995 3.83764 4.01415 4.06029 4.15504 4.18498 4.23648 4.41065 4.42847 4.46433 4.52045 4.59969 4.64088 4.71477 4.82103 4.92359 4.94720 4.97269 5.06108 5.08966 5.19285 5.25763 5.31438 5.36618 5.45276 5.46462 5.52349 5.86699 5.92665 6.05395 6.26788 6.28486 6.51182 6.68614 6.87710 6.94745 7.30915 8.30437 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.002883 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.207944 B = 9708.349141 C =10291.798359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.121 4.121 4 C 0.058 3.942 5 O -0.412 6.412 6 C 0.060 3.940 7 C 0.118 3.882 8 N -0.709 5.709 9 C 0.558 3.442 10 O -0.592 6.592 11 C -0.139 4.139 12 C -0.197 4.197 13 C -0.095 4.095 14 C -0.217 4.217 15 C 0.066 3.934 16 C -0.497 4.497 17 H 0.085 0.915 18 C 0.028 3.972 19 N -0.826 5.826 20 Si 0.985 3.015 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.249 1.249 24 C -0.132 4.132 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.413 0.587 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.110 0.890 42 H 0.286 0.714 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.436 -20.469 -3.263 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.159 4.159 4 C -0.018 4.018 5 O -0.333 6.333 6 C -0.016 4.016 7 C -0.006 4.006 8 N -0.362 5.362 9 C 0.348 3.652 10 O -0.474 6.474 11 C -0.142 4.142 12 C -0.217 4.217 13 C -0.113 4.113 14 C -0.237 4.237 15 C 0.064 3.936 16 C -0.526 4.526 17 H 0.103 0.897 18 C -0.187 4.187 19 N -0.452 5.452 20 Si 0.805 3.195 21 H -0.191 1.191 22 H -0.194 1.194 23 H -0.173 1.173 24 C -0.153 4.153 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.250 0.750 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.128 0.872 42 H 0.097 0.903 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.190 -19.811 -4.123 20.485 hybrid contribution 0.229 0.747 0.028 0.782 sum -2.961 -19.064 -4.095 19.722 Atomic orbital electron populations 1.21781 0.95416 1.02213 1.01800 1.21413 0.96274 0.94834 1.02877 1.21576 0.93624 0.98193 1.02510 1.22681 0.95134 0.82632 1.01325 1.87937 1.21434 1.28189 1.95696 1.22754 0.81586 0.93998 1.03266 1.21502 1.00063 0.92802 0.86206 1.45704 1.60130 1.09107 1.21244 1.18762 0.77745 0.82203 0.86517 1.90661 1.44430 1.64093 1.48174 1.19792 1.04641 0.94968 0.94824 1.20830 1.06632 0.99188 0.95059 1.20921 0.99122 0.94414 0.96859 1.21412 1.05668 0.95454 1.01129 1.17967 0.89836 0.94142 0.91675 1.19871 1.45141 0.92922 0.94640 0.89680 1.26894 0.93085 1.04828 0.93914 1.69899 1.34482 1.38731 1.02057 0.85165 0.78808 0.75736 0.79787 1.19069 1.19432 1.17272 1.21457 1.01907 0.92813 0.99117 0.92942 0.91624 0.92986 0.91056 0.91074 0.92150 0.92245 0.92025 0.91998 0.89141 0.90644 0.89637 0.92712 0.74970 0.84914 0.84315 0.87227 0.90305 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 71.98 0.71 -1.10 16 2 C -0.12 -1.34 5.93 30.60 0.18 -1.16 16 3 C -0.12 -1.93 5.58 30.60 0.17 -1.76 16 4 C 0.06 0.91 5.94 71.98 0.43 1.33 16 5 O -0.41 -9.14 10.29 -148.98 -1.53 -10.67 16 6 C 0.06 1.11 6.07 71.98 0.44 1.54 16 7 C 0.12 3.20 6.06 86.38 0.52 3.72 16 8 N -0.71 -23.75 5.45 -465.93 -2.54 -26.29 16 9 C 0.56 25.62 7.77 86.80 0.67 26.29 16 10 O -0.59 -31.84 16.33 -3.87 -0.06 -31.91 16 11 C -0.14 -6.82 5.87 -20.13 -0.12 -6.94 16 12 C -0.20 -8.05 9.55 22.70 0.22 -7.83 16 13 C -0.10 -3.87 10.01 22.18 0.22 -3.64 16 14 C -0.22 -10.33 9.78 22.77 0.22 -10.11 16 15 C 0.07 3.67 5.57 -21.32 -0.12 3.55 16 16 C -0.50 -27.50 9.05 23.47 0.21 -27.28 16 17 H 0.09 4.43 7.91 -2.91 -0.02 4.41 16 18 C 0.03 1.47 5.14 85.25 0.44 1.91 16 19 N -0.83 -47.18 10.96 21.82 0.24 -46.94 16 20 Si 0.98 40.32 29.59 68.60 2.03 42.35 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 22 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 23 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 24 C -0.13 -7.57 8.24 23.01 0.19 -7.38 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.41 11.76 6.49 -92.71 -0.60 11.15 16 39 H 0.13 4.21 6.38 -2.91 -0.02 4.19 16 40 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 41 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 42 H 0.29 15.07 8.30 -92.71 -0.77 14.30 16 43 H 0.10 6.27 5.74 -2.91 -0.02 6.26 16 Total: -1.00 -71.49 361.20 2.92 -68.57 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: 0.39 Total: 33.74 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 4.39 Total: -28.85 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -2.30 Total: -73.23 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -1.60 Total: -42.58 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -71.49 2.92 -68.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195109100.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.732 kcal (2) G-P(sol) polarization free energy of solvation -71.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds