Wall clock time and date at job start Tue Mar 31 2020 07:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47178 * 2 1 4 4 C 1.53006 * 109.47337 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47213 * 179.97438 * 4 3 2 6 6 C 1.42900 * 113.99770 * 175.17474 * 5 4 3 7 7 H 1.08994 * 109.47259 * 33.55591 * 6 5 4 8 8 C 1.53000 * 109.46956 * 273.55258 * 6 5 4 9 9 C 1.50702 * 109.47058 * 153.56030 * 6 5 4 10 10 O 1.21279 * 119.99894 * 7.50051 * 9 6 5 11 11 N 1.34770 * 120.00005 * 187.50758 * 9 6 5 12 12 C 1.37141 * 120.00179 * 6.22115 * 11 9 6 13 13 H 1.08001 * 119.99719 * 48.23043 * 12 11 9 14 14 C 1.38888 * 120.00284 * 228.23652 * 12 11 9 15 15 N 1.31423 * 120.00121 * 201.94248 * 14 12 11 16 16 Si 1.86796 * 120.00014 * 21.93762 * 14 12 11 17 17 H 1.48506 * 109.46971 * 95.20631 * 16 14 12 18 18 H 1.48499 * 109.47306 * 215.20541 * 16 14 12 19 19 H 1.48501 * 109.47421 * 335.20635 * 16 14 12 20 20 C 1.39783 * 120.00199 * 186.22326 * 11 9 6 21 21 C 1.38959 * 120.07594 * 7.07655 * 20 11 9 22 22 C 1.38090 * 119.91987 * 179.74496 * 21 20 11 23 23 C 1.38303 * 120.07726 * 0.52882 * 22 21 20 24 24 C 1.38307 * 120.15673 * 359.72474 * 23 22 21 25 25 C 1.38078 * 120.07747 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.47305 * 300.00006 * 1 2 3 27 27 H 1.09002 * 109.47200 * 60.00215 * 1 2 3 28 28 H 1.09007 * 109.47208 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47305 * 239.99994 * 2 1 3 30 30 H 1.09002 * 109.47200 * 119.99785 * 2 1 3 31 31 H 1.08999 * 109.47441 * 59.99930 * 3 2 1 32 32 H 1.09006 * 109.47142 * 299.99550 * 3 2 1 33 33 H 1.08999 * 109.46832 * 59.99655 * 4 3 2 34 34 H 1.08993 * 109.47026 * 300.00132 * 4 3 2 35 35 H 1.08996 * 109.47561 * 294.57208 * 8 6 5 36 36 H 1.09005 * 109.47074 * 54.56929 * 8 6 5 37 37 H 1.09001 * 109.47347 * 174.56045 * 8 6 5 38 38 H 0.97003 * 120.00079 * 179.97438 * 15 14 12 39 39 H 1.07999 * 120.04011 * 359.97438 * 21 20 11 40 40 H 1.08001 * 119.95816 * 180.25609 * 22 21 20 41 41 H 1.08003 * 119.91832 * 179.69951 * 23 22 21 42 42 H 1.08000 * 119.95829 * 179.97438 * 24 23 22 43 43 H 1.08006 * 120.04053 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.4664 2.9042 0.1104 7 1 5.9392 2.0638 -0.3977 8 6 5.8654 2.8972 1.5874 9 6 5.9174 4.1939 -0.5255 10 8 5.0969 5.0038 -0.9018 11 7 7.2325 4.4472 -0.6761 12 6 8.1564 3.4812 -0.3695 13 1 8.0309 2.4758 -0.7435 14 6 9.2534 3.7957 0.4222 15 7 10.3342 3.0497 0.3738 16 14 9.1925 5.2792 1.5557 17 1 8.7870 4.8457 2.9170 18 1 10.5350 5.9110 1.6168 19 1 8.2070 6.2603 1.0346 20 6 7.6549 5.6945 -1.1449 21 6 6.7352 6.7219 -1.3163 22 6 7.1568 7.9545 -1.7746 23 6 8.4909 8.1636 -2.0733 24 6 9.4082 7.1416 -1.9089 25 6 8.9945 5.9082 -1.4462 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8908 35 1 5.4721 3.7896 2.0743 36 1 5.4560 2.0097 2.0702 37 1 6.9522 2.8870 1.6703 38 1 11.1005 3.2696 0.9264 39 1 5.6924 6.5579 -1.0878 40 1 6.4431 8.7547 -1.9041 41 1 8.8170 9.1271 -2.4362 42 1 10.4491 7.3083 -2.1436 43 1 9.7113 5.1104 -1.3185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195114358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:27 Heat of formation + Delta-G solvation = -44.815099 kcal Electronic energy + Delta-G solvation = -23825.138198 eV Core-core repulsion = 20450.038909 eV Total energy + Delta-G solvation = -3375.099289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.16231 -38.20291 -37.03814 -35.17388 -34.93330 -32.32447 -31.26448 -30.01260 -29.02751 -28.44836 -25.41873 -24.11461 -23.04552 -21.82487 -21.21089 -21.03330 -19.34907 -18.13797 -16.66339 -16.10102 -15.89686 -15.66371 -15.45904 -14.71368 -14.54856 -14.19058 -13.95728 -13.65363 -13.27116 -13.10865 -12.94292 -12.67944 -12.62484 -12.30274 -12.10358 -12.03647 -11.62523 -11.61799 -11.31596 -11.14090 -11.06784 -10.96059 -10.77586 -10.66179 -10.49801 -10.26969 -10.09367 -9.59124 -9.30661 -8.78234 -8.30626 -8.10451 -7.06541 -6.72305 -4.47892 2.07999 2.22377 3.06070 3.16205 3.30273 3.50466 3.54115 4.03505 4.42862 4.56449 4.84534 4.87597 5.01406 5.10220 5.28817 5.42459 5.52050 5.58187 5.64677 5.65504 5.69217 5.74274 5.78936 5.81239 5.83184 5.93008 6.01870 6.21022 6.22532 6.26824 6.34259 6.36213 6.44090 6.58217 6.77184 6.84231 7.15599 7.25766 7.32621 7.38799 7.56828 7.70228 7.90716 8.17317 8.71544 9.04705 9.33763 10.32672 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019538 B = 0.004680 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.777362 B = 5981.715534 C = 6924.627021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.118 4.118 4 C 0.060 3.940 5 O -0.367 6.367 6 C 0.093 3.907 7 H 0.085 0.915 8 C -0.166 4.166 9 C 0.494 3.506 10 O -0.541 6.541 11 N -0.403 5.403 12 C -0.377 4.377 13 H 0.108 0.892 14 C 0.093 3.907 15 N -0.841 5.841 16 Si 0.851 3.149 17 H -0.274 1.274 18 H -0.275 1.275 19 H -0.243 1.243 20 C 0.175 3.825 21 C -0.184 4.184 22 C -0.107 4.107 23 C -0.174 4.174 24 C -0.108 4.108 25 C -0.159 4.159 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.280 0.720 39 H 0.172 0.828 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 -2.345 0.750 8.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.155 4.155 4 C -0.017 4.017 5 O -0.285 6.285 6 C 0.033 3.967 7 H 0.103 0.897 8 C -0.224 4.224 9 C 0.286 3.714 10 O -0.422 6.422 11 N -0.113 5.113 12 C -0.503 4.503 13 H 0.125 0.875 14 C -0.119 4.119 15 N -0.473 5.473 16 Si 0.674 3.326 17 H -0.200 1.200 18 H -0.200 1.200 19 H -0.166 1.166 20 C 0.078 3.922 21 C -0.204 4.204 22 C -0.126 4.126 23 C -0.193 4.193 24 C -0.127 4.127 25 C -0.179 4.179 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.188 0.812 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.838 -1.951 0.643 9.073 hybrid contribution 0.669 0.358 0.677 1.017 sum -8.169 -1.593 1.320 8.427 Atomic orbital electron populations 1.21752 0.95636 1.01446 1.01992 1.21446 0.96009 0.96359 1.02162 1.21527 0.93814 0.96799 1.03384 1.22533 0.94769 0.84446 0.99970 1.87961 1.20546 1.25369 1.94659 1.21567 0.81319 0.96841 0.96979 0.89733 1.22167 1.04496 1.01630 0.94081 1.20610 0.82398 0.88409 0.80031 1.90288 1.53562 1.47580 1.50819 1.41310 1.05139 1.11087 1.53762 1.18915 1.03811 0.92861 1.34688 0.87454 1.25362 0.94242 0.96963 0.95289 1.69791 1.02386 1.39101 1.36021 0.87186 0.79868 0.84050 0.81452 1.19991 1.20016 1.16600 1.18362 0.93292 0.86325 0.94210 1.22537 1.03134 0.91965 1.02786 1.20973 0.95309 0.96698 0.99588 1.20889 0.93867 0.98773 1.05785 1.20838 0.98770 0.93175 0.99874 1.21213 0.95627 0.98280 1.02794 0.92678 0.92642 0.92812 0.91866 0.91903 0.91232 0.91114 0.93583 0.93427 0.92564 0.92461 0.88744 0.90921 0.81184 0.87072 0.87471 0.86917 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.15 0.37 -0.90 16 2 C -0.12 -1.17 5.93 -26.74 -0.16 -1.33 16 3 C -0.12 -1.43 5.58 -26.73 -0.15 -1.58 16 4 C 0.06 0.86 5.72 37.16 0.21 1.07 16 5 O -0.37 -6.95 9.54 -55.03 -0.53 -7.47 16 6 C 0.09 1.85 2.42 -27.88 -0.07 1.78 16 7 H 0.08 1.60 7.10 -51.93 -0.37 1.23 16 8 C -0.17 -3.05 9.29 37.16 0.35 -2.70 16 9 C 0.49 11.53 6.92 -10.99 -0.08 11.45 16 10 O -0.54 -13.49 13.02 -14.24 -0.19 -13.67 16 11 N -0.40 -9.69 2.22 -58.98 -0.13 -9.82 16 12 C -0.38 -9.22 6.51 -14.94 -0.10 -9.32 16 13 H 0.11 2.71 7.45 -52.49 -0.39 2.32 16 14 C 0.09 2.29 3.46 -17.49 -0.06 2.23 16 15 N -0.84 -21.43 13.96 55.49 0.77 -20.66 16 16 Si 0.85 19.81 25.61 -169.99 -4.35 15.46 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.24 -5.93 5.55 56.52 0.31 -5.62 16 20 C 0.17 4.17 4.03 -83.70 -0.34 3.84 16 21 C -0.18 -4.19 8.97 -39.37 -0.35 -4.54 16 22 C -0.11 -2.09 10.04 -39.61 -0.40 -2.49 16 23 C -0.17 -3.21 10.04 -39.53 -0.40 -3.61 16 24 C -0.11 -2.13 10.04 -39.61 -0.40 -2.52 16 25 C -0.16 -3.61 6.71 -39.37 -0.26 -3.87 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.62 7.44 -51.93 -0.39 0.23 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.88 7.45 -51.93 -0.39 0.49 16 37 H 0.09 1.89 6.26 -51.93 -0.33 1.56 16 38 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 39 H 0.17 4.05 4.71 -55.27 -0.26 3.79 16 40 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 42 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 43 H 0.14 3.44 5.62 -52.48 -0.29 3.14 16 LS Contribution 341.49 15.07 5.15 5.15 Total: -1.00 -27.81 341.49 -7.81 -35.63 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.71 Total: 7.88 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.83 Total: -12.49 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.64 Total: -30.47 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.71 Total: -21.15 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.35 Total: 15.46 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.81 -7.81 -35.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195114358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.186 kcal (2) G-P(sol) polarization free energy of solvation -27.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds