Wall clock time and date at job start Tue Mar 31 2020 07:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47178 * 2 1 4 4 C 1.53006 * 109.47337 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47213 * 179.97438 * 4 3 2 6 6 C 1.42900 * 113.99770 * 175.17474 * 5 4 3 7 7 H 1.08994 * 109.47259 * 33.55591 * 6 5 4 8 8 C 1.53000 * 109.46956 * 273.55258 * 6 5 4 9 9 C 1.50702 * 109.47058 * 153.56030 * 6 5 4 10 10 O 1.21279 * 119.99894 * 7.50051 * 9 6 5 11 11 N 1.34770 * 120.00005 * 187.50758 * 9 6 5 12 12 C 1.37141 * 120.00179 * 6.22115 * 11 9 6 13 13 H 1.08001 * 119.99719 * 48.23043 * 12 11 9 14 14 C 1.38888 * 120.00284 * 228.23652 * 12 11 9 15 15 N 1.31423 * 120.00121 * 201.94248 * 14 12 11 16 16 Si 1.86796 * 120.00014 * 21.93762 * 14 12 11 17 17 H 1.48506 * 109.46971 * 95.20631 * 16 14 12 18 18 H 1.48499 * 109.47306 * 215.20541 * 16 14 12 19 19 H 1.48501 * 109.47421 * 335.20635 * 16 14 12 20 20 C 1.39783 * 120.00199 * 186.22326 * 11 9 6 21 21 C 1.38959 * 120.07594 * 7.07655 * 20 11 9 22 22 C 1.38090 * 119.91987 * 179.74496 * 21 20 11 23 23 C 1.38303 * 120.07726 * 0.52882 * 22 21 20 24 24 C 1.38307 * 120.15673 * 359.72474 * 23 22 21 25 25 C 1.38078 * 120.07747 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.47305 * 300.00006 * 1 2 3 27 27 H 1.09002 * 109.47200 * 60.00215 * 1 2 3 28 28 H 1.09007 * 109.47208 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47305 * 239.99994 * 2 1 3 30 30 H 1.09002 * 109.47200 * 119.99785 * 2 1 3 31 31 H 1.08999 * 109.47441 * 59.99930 * 3 2 1 32 32 H 1.09006 * 109.47142 * 299.99550 * 3 2 1 33 33 H 1.08999 * 109.46832 * 59.99655 * 4 3 2 34 34 H 1.08993 * 109.47026 * 300.00132 * 4 3 2 35 35 H 1.08996 * 109.47561 * 294.57208 * 8 6 5 36 36 H 1.09005 * 109.47074 * 54.56929 * 8 6 5 37 37 H 1.09001 * 109.47347 * 174.56045 * 8 6 5 38 38 H 0.97003 * 120.00079 * 179.97438 * 15 14 12 39 39 H 1.07999 * 120.04011 * 359.97438 * 21 20 11 40 40 H 1.08001 * 119.95816 * 180.25609 * 22 21 20 41 41 H 1.08003 * 119.91832 * 179.69951 * 23 22 21 42 42 H 1.08000 * 119.95829 * 179.97438 * 24 23 22 43 43 H 1.08006 * 120.04053 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.4664 2.9042 0.1104 7 1 5.9392 2.0638 -0.3977 8 6 5.8654 2.8972 1.5874 9 6 5.9174 4.1939 -0.5255 10 8 5.0969 5.0038 -0.9018 11 7 7.2325 4.4472 -0.6761 12 6 8.1564 3.4812 -0.3695 13 1 8.0309 2.4758 -0.7435 14 6 9.2534 3.7957 0.4222 15 7 10.3342 3.0497 0.3738 16 14 9.1925 5.2792 1.5557 17 1 8.7870 4.8457 2.9170 18 1 10.5350 5.9110 1.6168 19 1 8.2070 6.2603 1.0346 20 6 7.6549 5.6945 -1.1449 21 6 6.7352 6.7219 -1.3163 22 6 7.1568 7.9545 -1.7746 23 6 8.4909 8.1636 -2.0733 24 6 9.4082 7.1416 -1.9089 25 6 8.9945 5.9082 -1.4462 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8908 35 1 5.4721 3.7896 2.0743 36 1 5.4560 2.0097 2.0702 37 1 6.9522 2.8870 1.6703 38 1 11.1005 3.2696 0.9264 39 1 5.6924 6.5579 -1.0878 40 1 6.4431 8.7547 -1.9041 41 1 8.8170 9.1271 -2.4362 42 1 10.4491 7.3083 -2.1436 43 1 9.7113 5.1104 -1.3185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195114358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:27 Heat of formation + Delta-G solvation = -58.664785 kcal Electronic energy + Delta-G solvation = -23825.738765 eV Core-core repulsion = 20450.038909 eV Total energy + Delta-G solvation = -3375.699857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.89995 -39.70839 -38.55963 -36.97833 -35.90730 -34.22510 -32.70676 -31.64399 -30.42571 -29.68788 -27.27989 -25.57625 -24.20442 -23.42566 -22.72822 -22.04936 -21.11458 -19.86301 -18.30458 -17.73520 -17.40023 -17.13538 -16.80478 -16.37855 -16.15355 -15.64747 -15.36747 -14.95520 -14.83699 -14.65428 -14.30830 -14.25322 -14.01924 -13.97952 -13.65623 -13.18531 -13.13890 -13.06575 -12.78581 -12.54920 -12.52254 -12.17917 -12.01729 -11.93570 -11.86671 -11.75263 -11.52071 -11.38709 -10.71146 -10.63113 -10.03847 -9.74392 -8.82777 -8.63220 -6.40396 0.43100 0.57709 1.19989 1.27636 1.41821 1.74744 2.00515 2.16830 2.67716 3.03297 3.14600 3.77519 3.98091 4.01204 4.12137 4.19011 4.19803 4.22096 4.24561 4.41819 4.46186 4.47375 4.68979 4.70521 4.78311 4.79117 4.81082 4.88220 4.92522 4.96807 5.05971 5.23290 5.24828 5.26227 5.36206 5.44520 5.46235 5.59972 5.67771 5.73994 5.97390 6.01948 6.19387 6.40840 6.82772 7.21065 7.51817 8.43743 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019538 B = 0.004680 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.777362 B = 5981.715534 C = 6924.627021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.113 4.113 4 C 0.051 3.949 5 O -0.388 6.388 6 C 0.100 3.900 7 H 0.089 0.911 8 C -0.158 4.158 9 C 0.481 3.519 10 O -0.565 6.565 11 N -0.411 5.411 12 C -0.371 4.371 13 H 0.092 0.908 14 C 0.079 3.921 15 N -0.868 5.868 16 Si 0.888 3.112 17 H -0.269 1.269 18 H -0.270 1.270 19 H -0.260 1.260 20 C 0.144 3.856 21 C -0.207 4.207 22 C -0.104 4.104 23 C -0.160 4.160 24 C -0.107 4.107 25 C -0.179 4.179 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.286 0.714 39 H 0.155 0.845 40 H 0.144 0.856 41 H 0.153 0.847 42 H 0.144 0.856 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.629 -1.523 0.840 8.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.151 4.151 4 C -0.025 4.025 5 O -0.307 6.307 6 C 0.039 3.961 7 H 0.107 0.893 8 C -0.216 4.216 9 C 0.274 3.726 10 O -0.449 6.449 11 N -0.122 5.122 12 C -0.496 4.496 13 H 0.110 0.890 14 C -0.130 4.130 15 N -0.501 5.501 16 Si 0.712 3.288 17 H -0.195 1.195 18 H -0.195 1.195 19 H -0.184 1.184 20 C 0.048 3.952 21 C -0.226 4.226 22 C -0.123 4.123 23 C -0.179 4.179 24 C -0.125 4.125 25 C -0.199 4.199 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.172 0.828 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.162 0.838 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.981 -1.134 0.735 9.082 hybrid contribution 0.680 0.168 0.550 0.891 sum -8.301 -0.966 1.285 8.455 Atomic orbital electron populations 1.21752 0.94680 1.02365 1.01981 1.21431 0.96792 0.94435 1.02847 1.21537 0.92207 0.98595 1.02749 1.22855 0.96116 0.82555 1.01007 1.87940 1.19689 1.28285 1.94822 1.21461 0.82155 0.94996 0.97447 0.89320 1.22090 1.03303 1.02866 0.93300 1.21270 0.82075 0.89511 0.79768 1.90269 1.53970 1.48701 1.51911 1.41394 1.05299 1.11298 1.54171 1.18738 1.03981 0.92479 1.34445 0.89041 1.25567 0.93918 0.97913 0.95619 1.69809 1.02969 1.40311 1.37039 0.86627 0.79344 0.82273 0.80554 1.19503 1.19478 1.18387 1.18670 0.94199 0.86553 0.95773 1.22539 1.02383 0.93361 1.04358 1.21382 0.96832 0.96135 0.97918 1.21371 0.92878 1.00100 1.03507 1.21266 1.00770 0.92156 0.98338 1.21200 0.94808 0.99338 1.04561 0.92543 0.92873 0.91422 0.91462 0.90940 0.91441 0.92215 0.93136 0.91716 0.93260 0.89215 0.90528 0.90380 0.82805 0.83799 0.82951 0.83827 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 71.98 0.71 -1.57 16 2 C -0.12 -2.05 5.93 30.59 0.18 -1.87 16 3 C -0.11 -2.66 5.58 30.60 0.17 -2.49 16 4 C 0.05 1.42 5.72 71.98 0.41 1.83 16 5 O -0.39 -14.79 9.54 -130.05 -1.24 -16.03 16 6 C 0.10 4.02 2.42 29.85 0.07 4.09 16 7 H 0.09 3.43 7.10 -2.39 -0.02 3.41 16 8 C -0.16 -5.78 9.29 71.98 0.67 -5.12 16 9 C 0.48 23.15 6.92 87.66 0.61 23.76 16 10 O -0.57 -29.16 13.02 15.90 0.21 -28.95 16 11 N -0.41 -20.31 2.22 -458.91 -1.02 -21.33 16 12 C -0.37 -18.62 6.51 84.02 0.55 -18.07 16 13 H 0.09 4.80 7.45 -2.91 -0.02 4.78 16 14 C 0.08 3.96 3.46 84.91 0.29 4.25 16 15 N -0.87 -44.64 13.96 21.65 0.30 -44.34 16 16 Si 0.89 40.99 25.61 68.60 1.76 42.74 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.26 -12.73 5.55 99.48 0.55 -12.18 16 20 C 0.14 6.96 4.03 38.22 0.15 7.11 16 21 C -0.21 -9.38 8.97 22.41 0.20 -9.18 16 22 C -0.10 -3.82 10.04 22.25 0.22 -3.60 16 23 C -0.16 -5.29 10.04 22.30 0.22 -5.07 16 24 C -0.11 -3.95 10.04 22.25 0.22 -3.72 16 25 C -0.18 -8.08 6.71 22.40 0.15 -7.93 16 26 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.58 7.44 -2.39 -0.02 1.56 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.09 2.63 7.45 -2.38 -0.02 2.62 16 37 H 0.08 3.09 6.26 -2.39 -0.01 3.07 16 38 H 0.29 13.72 8.31 -92.71 -0.77 12.95 16 39 H 0.16 7.52 4.71 -46.97 -0.22 7.29 16 40 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 41 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 42 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 43 H 0.12 6.01 5.62 -2.91 -0.02 5.99 16 Total: -1.00 -61.04 341.49 5.47 -55.56 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.62 Total: 29.91 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 4.84 Total: -17.57 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -0.72 Total: -65.66 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -1.03 Total: -44.99 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.76 Total: 42.74 kcal Total: -61.04 5.47 -55.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195114358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.101 kcal (2) G-P(sol) polarization free energy of solvation -61.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds