Wall clock time and date at job start Tue Mar 31 2020 06:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47084 * 2 1 4 4 C 1.52995 * 109.47048 * 120.00402 * 2 1 3 5 5 N 1.46498 * 109.47548 * 64.99796 * 4 2 1 6 6 C 1.46502 * 119.99914 * 264.34766 * 5 4 2 7 7 C 1.50698 * 109.47135 * 269.99676 * 6 5 4 8 8 H 1.08006 * 119.99831 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00323 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99687 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00341 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46950 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46964 * 119.99951 * 11 9 7 14 14 H 1.48494 * 109.47564 * 240.00366 * 11 9 7 15 15 C 1.34775 * 120.00136 * 84.34656 * 5 4 2 16 16 O 1.21277 * 119.99906 * 185.42205 * 15 5 4 17 17 C 1.50697 * 119.99831 * 5.41416 * 15 5 4 18 18 H 1.09001 * 109.47703 * 320.01472 * 17 15 5 19 19 O 1.42897 * 109.47339 * 200.01224 * 17 15 5 20 20 C 1.50707 * 109.46861 * 80.01137 * 17 15 5 21 21 C 1.38235 * 120.00123 * 252.51650 * 20 17 15 22 22 C 1.38235 * 120.00025 * 180.02562 * 21 20 17 23 23 C 1.38231 * 119.99814 * 359.95198 * 22 21 20 24 24 C 1.38240 * 120.00315 * 0.02562 * 23 22 21 25 25 C 1.38230 * 119.99743 * 0.06683 * 24 23 22 26 26 H 1.08993 * 109.46902 * 299.99828 * 1 2 3 27 27 H 1.09000 * 109.46737 * 60.00178 * 1 2 3 28 28 H 1.08998 * 109.47027 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46759 * 240.00252 * 2 1 3 30 30 H 1.09004 * 109.47057 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47087 * 300.00052 * 3 2 1 32 32 H 1.09001 * 109.46796 * 60.00186 * 3 2 1 33 33 H 1.09009 * 109.46878 * 304.99880 * 4 2 1 34 34 H 1.08996 * 109.47420 * 185.00137 * 4 2 1 35 35 H 1.09000 * 109.47245 * 29.99832 * 6 5 4 36 36 H 1.09003 * 109.47325 * 149.99792 * 6 5 4 37 37 H 0.97004 * 119.99939 * 180.02562 * 10 9 7 38 38 H 0.96703 * 114.00057 * 299.99752 * 19 17 15 39 39 H 1.07998 * 119.99761 * 359.97438 * 21 20 17 40 40 H 1.07996 * 119.99899 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.99854 * 179.71952 * 23 22 21 42 42 H 1.07998 * 119.99916 * 179.97438 * 24 23 22 43 43 H 1.08006 * 119.99962 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 0.4357 -2.5872 1.8683 7 6 0.7702 -2.9984 3.2790 8 1 1.7874 -2.9279 3.6351 9 6 -0.2223 -3.4635 4.1153 10 7 -1.4610 -3.5489 3.6817 11 14 0.1925 -3.9739 5.8637 12 1 1.6457 -3.7840 6.1032 13 1 -0.5794 -3.1394 6.8192 14 1 -0.1591 -5.4034 6.0587 15 6 2.4152 -3.0136 0.5130 16 8 2.0448 -4.1608 0.3810 17 6 3.7283 -2.5726 -0.0807 18 1 3.6180 -1.5752 -0.5063 19 8 4.1185 -3.4877 -1.1065 20 6 4.7825 -2.5455 0.9960 21 6 5.2477 -1.3362 1.4776 22 6 6.2150 -1.3114 2.4647 23 6 6.7164 -2.4959 2.9710 24 6 6.2508 -3.7053 2.4897 25 6 5.2849 -3.7301 1.5012 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2951 35 1 -0.2928 -1.7767 1.8892 36 1 0.0169 -3.4384 1.3314 37 1 -2.1595 -3.8758 4.2702 38 1 4.2355 -4.3970 -0.7988 39 1 4.8559 -0.4108 1.0819 40 1 6.5787 -0.3666 2.8407 41 1 7.4754 -2.4765 3.7391 42 1 6.6429 -4.6308 2.8850 43 1 4.9215 -4.6750 1.1249 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219916075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:08 Heat of formation + Delta-G solvation = -70.201493 kcal Electronic energy + Delta-G solvation = -24475.135962 eV Core-core repulsion = 21098.935836 eV Total energy + Delta-G solvation = -3376.200126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.23865 -38.51145 -36.76806 -35.81209 -33.59847 -32.44094 -31.50521 -30.83174 -28.21226 -26.88830 -26.49038 -25.30927 -22.88769 -22.57499 -21.45713 -20.24232 -18.92814 -17.53905 -16.84625 -16.50923 -16.19753 -15.68984 -14.97733 -14.60499 -14.52740 -14.42037 -14.05646 -13.48228 -13.32593 -13.29320 -13.23213 -12.69902 -12.47758 -12.23572 -12.07410 -11.85948 -11.68940 -11.39164 -11.34187 -11.06053 -11.00131 -10.95260 -10.68869 -10.53351 -10.47879 -10.32708 -10.12986 -9.60250 -9.15263 -8.85065 -8.44703 -8.44505 -7.66563 -6.05845 -4.10218 1.33480 1.45615 3.23097 3.27565 3.35510 3.40000 3.76732 3.87851 4.42514 4.62113 4.76215 4.84121 4.92155 5.03729 5.07613 5.14009 5.15242 5.27688 5.29554 5.40720 5.52984 5.66674 5.68869 5.79442 5.85586 5.95383 6.06007 6.07706 6.11548 6.16181 6.27815 6.46682 6.52346 6.54423 6.57966 6.65800 7.01201 7.04589 7.42330 7.52007 7.62878 7.90930 8.22556 8.35967 8.85105 9.01053 9.54722 11.02140 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010707 B = 0.007173 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.429360 B = 3902.596753 C = 5099.595195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.144 4.144 4 C 0.104 3.896 5 N -0.584 5.584 6 C 0.243 3.757 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.487 3.513 16 O -0.537 6.537 17 C 0.128 3.872 18 H 0.122 0.878 19 O -0.538 6.538 20 C -0.106 4.106 21 C -0.107 4.107 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.100 4.100 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.382 0.618 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.288 8.189 -5.086 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.138 4.138 3 C -0.202 4.202 4 C -0.021 4.021 5 N -0.315 5.315 6 C 0.124 3.876 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.273 3.727 16 O -0.415 6.415 17 C 0.065 3.935 18 H 0.139 0.861 19 O -0.344 6.344 20 C -0.107 4.107 21 C -0.125 4.125 22 C -0.137 4.137 23 C -0.137 4.137 24 C -0.133 4.133 25 C -0.118 4.118 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.231 0.769 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.847 8.044 -5.455 16.109 hybrid contribution 0.059 -0.719 1.544 1.704 sum 12.905 7.325 -3.911 15.346 Atomic orbital electron populations 1.21854 0.94457 1.02921 1.01073 1.21654 0.97374 0.95993 0.98760 1.21788 1.00526 0.95878 1.01974 1.21808 0.99706 0.82335 0.98214 1.48150 1.26649 1.06759 1.49987 1.19390 0.80433 0.96177 0.91586 1.21472 0.94773 1.43393 0.96712 0.92474 1.24918 0.94893 0.95507 0.98718 1.69943 1.00370 1.46717 1.36251 0.86485 0.78465 0.78362 0.84402 1.19807 1.20951 1.20888 1.20881 0.85990 0.86383 0.79470 1.90662 1.72630 1.18790 1.59445 1.20856 0.90047 0.95134 0.87467 0.86093 1.86540 1.90344 1.22558 1.34973 1.20195 0.97747 0.94258 0.98459 1.20990 0.97043 0.96923 0.97505 1.21079 0.97316 0.98243 0.97064 1.21154 1.00099 0.92655 0.99766 1.21099 0.97275 0.98133 0.96842 1.20957 0.96422 0.97796 0.96612 0.92472 0.93448 0.91564 0.91498 0.92908 0.92642 0.92353 0.89583 0.91232 0.94397 0.93922 0.92791 0.76861 0.85615 0.85908 0.86145 0.85940 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.33 37.16 0.31 -1.88 16 2 C -0.12 -1.61 2.85 -90.62 -0.26 -1.87 16 3 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 4 C 0.10 1.67 4.47 -4.05 -0.02 1.65 16 5 N -0.58 -12.19 2.19 -175.06 -0.38 -12.58 16 6 C 0.24 6.26 4.28 -5.19 -0.02 6.24 16 7 C -0.52 -14.77 9.39 -34.44 -0.32 -15.09 16 8 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 11 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.49 10.21 6.76 -10.99 -0.07 10.13 16 16 O -0.54 -13.41 15.88 -13.50 -0.21 -13.63 16 17 C 0.13 2.08 2.89 -29.03 -0.08 2.00 16 18 H 0.12 1.74 5.65 -51.93 -0.29 1.44 16 19 O -0.54 -8.74 13.04 -54.30 -0.71 -9.45 16 20 C -0.11 -1.61 4.76 -104.62 -0.50 -2.10 16 21 C -0.11 -1.39 8.28 -39.58 -0.33 -1.72 16 22 C -0.12 -1.42 10.05 -39.58 -0.40 -1.81 16 23 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 24 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 25 C -0.10 -1.50 9.19 -39.58 -0.36 -1.87 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.19 6.33 -51.93 -0.33 0.86 16 29 H 0.07 0.93 7.11 -51.93 -0.37 0.56 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.46 8.03 -51.92 -0.42 1.05 16 34 H 0.07 0.98 3.41 -51.93 -0.18 0.80 16 35 H 0.04 0.98 6.63 -51.93 -0.34 0.63 16 36 H 0.04 1.26 7.35 -51.93 -0.38 0.88 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.38 5.57 7.36 45.56 0.34 5.90 16 39 H 0.13 1.35 6.62 -52.49 -0.35 1.00 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.12 1.81 7.12 -52.48 -0.37 1.44 16 LS Contribution 347.90 15.07 5.24 5.24 Total: -1.00 -33.25 347.90 -8.58 -41.83 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.63 Total: 6.98 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -2.61 Total: -9.58 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.35 Total: -38.27 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.92 Total: -23.07 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.25 -8.58 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219916075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.368 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds