Wall clock time and date at job start Tue Mar 31 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47084 * 2 1 4 4 C 1.52995 * 109.47048 * 120.00402 * 2 1 3 5 5 N 1.46498 * 109.47548 * 64.99796 * 4 2 1 6 6 C 1.46502 * 119.99914 * 264.34766 * 5 4 2 7 7 C 1.50698 * 109.47135 * 269.99676 * 6 5 4 8 8 H 1.08006 * 119.99831 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00323 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99687 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00341 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46950 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46964 * 119.99951 * 11 9 7 14 14 H 1.48494 * 109.47564 * 240.00366 * 11 9 7 15 15 C 1.34775 * 120.00136 * 84.34656 * 5 4 2 16 16 O 1.21277 * 119.99906 * 185.42205 * 15 5 4 17 17 C 1.50697 * 119.99831 * 5.41416 * 15 5 4 18 18 H 1.09001 * 109.47703 * 320.01472 * 17 15 5 19 19 O 1.42897 * 109.47339 * 200.01224 * 17 15 5 20 20 C 1.50707 * 109.46861 * 80.01137 * 17 15 5 21 21 C 1.38235 * 120.00123 * 252.51650 * 20 17 15 22 22 C 1.38235 * 120.00025 * 180.02562 * 21 20 17 23 23 C 1.38231 * 119.99814 * 359.95198 * 22 21 20 24 24 C 1.38240 * 120.00315 * 0.02562 * 23 22 21 25 25 C 1.38230 * 119.99743 * 0.06683 * 24 23 22 26 26 H 1.08993 * 109.46902 * 299.99828 * 1 2 3 27 27 H 1.09000 * 109.46737 * 60.00178 * 1 2 3 28 28 H 1.08998 * 109.47027 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46759 * 240.00252 * 2 1 3 30 30 H 1.09004 * 109.47057 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47087 * 300.00052 * 3 2 1 32 32 H 1.09001 * 109.46796 * 60.00186 * 3 2 1 33 33 H 1.09009 * 109.46878 * 304.99880 * 4 2 1 34 34 H 1.08996 * 109.47420 * 185.00137 * 4 2 1 35 35 H 1.09000 * 109.47245 * 29.99832 * 6 5 4 36 36 H 1.09003 * 109.47325 * 149.99792 * 6 5 4 37 37 H 0.97004 * 119.99939 * 180.02562 * 10 9 7 38 38 H 0.96703 * 114.00057 * 299.99752 * 19 17 15 39 39 H 1.07998 * 119.99761 * 359.97438 * 21 20 17 40 40 H 1.07996 * 119.99899 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.99854 * 179.71952 * 23 22 21 42 42 H 1.07998 * 119.99916 * 179.97438 * 24 23 22 43 43 H 1.08006 * 119.99962 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 0.4357 -2.5872 1.8683 7 6 0.7702 -2.9984 3.2790 8 1 1.7874 -2.9279 3.6351 9 6 -0.2223 -3.4635 4.1153 10 7 -1.4610 -3.5489 3.6817 11 14 0.1925 -3.9739 5.8637 12 1 1.6457 -3.7840 6.1032 13 1 -0.5794 -3.1394 6.8192 14 1 -0.1591 -5.4034 6.0587 15 6 2.4152 -3.0136 0.5130 16 8 2.0448 -4.1608 0.3810 17 6 3.7283 -2.5726 -0.0807 18 1 3.6180 -1.5752 -0.5063 19 8 4.1185 -3.4877 -1.1065 20 6 4.7825 -2.5455 0.9960 21 6 5.2477 -1.3362 1.4776 22 6 6.2150 -1.3114 2.4647 23 6 6.7164 -2.4959 2.9710 24 6 6.2508 -3.7053 2.4897 25 6 5.2849 -3.7301 1.5012 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2951 35 1 -0.2928 -1.7767 1.8892 36 1 0.0169 -3.4384 1.3314 37 1 -2.1595 -3.8758 4.2702 38 1 4.2355 -4.3970 -0.7988 39 1 4.8559 -0.4108 1.0819 40 1 6.5787 -0.3666 2.8407 41 1 7.4754 -2.4765 3.7391 42 1 6.6429 -4.6308 2.8850 43 1 4.9215 -4.6750 1.1249 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219916075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:07 Heat of formation + Delta-G solvation = -90.896044 kcal Electronic energy + Delta-G solvation = -24476.033345 eV Core-core repulsion = 21098.935836 eV Total energy + Delta-G solvation = -3377.097509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.62771 -39.75663 -38.14280 -37.20746 -35.40493 -34.21669 -32.72326 -31.81740 -30.00706 -27.98865 -27.88171 -26.83679 -24.73174 -23.57084 -22.67825 -21.44284 -20.44629 -18.75914 -18.62199 -18.27383 -17.71346 -16.78032 -16.62788 -16.01620 -15.97919 -15.69762 -15.35388 -14.82508 -14.66360 -14.59825 -14.29369 -14.26789 -13.77957 -13.67143 -13.46382 -13.12952 -13.06266 -12.96580 -12.76868 -12.64870 -12.55477 -12.22164 -12.16102 -12.01769 -11.86695 -11.69957 -11.56737 -11.51753 -10.66057 -10.61462 -9.84826 -9.66867 -9.42465 -8.24235 -6.38670 0.29652 0.46510 1.32924 1.35088 1.46799 1.65161 2.20642 2.38748 2.78800 3.05168 3.37055 3.52509 3.62931 3.78885 3.91340 4.00533 4.08990 4.15586 4.23631 4.28541 4.58168 4.59149 4.64458 4.69350 4.82769 4.89789 4.97346 5.00711 5.03392 5.08579 5.12698 5.20798 5.27757 5.41305 5.47832 5.50721 5.53578 5.57611 5.58057 5.82560 6.05088 6.05975 6.34262 6.66091 6.73430 7.21668 7.37101 8.82914 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010707 B = 0.007173 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.429360 B = 3902.596753 C = 5099.595195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.137 4.137 4 C 0.099 3.901 5 N -0.586 5.586 6 C 0.262 3.738 7 C -0.539 4.539 8 H 0.050 0.950 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.964 3.036 12 H -0.267 1.267 13 H -0.268 1.268 14 H -0.282 1.282 15 C 0.477 3.523 16 O -0.592 6.592 17 C 0.145 3.855 18 H 0.146 0.854 19 O -0.543 6.543 20 C -0.129 4.129 21 C -0.111 4.111 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.128 4.128 25 C -0.127 4.127 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.031 0.969 36 H -0.008 1.008 37 H 0.267 0.733 38 H 0.386 0.614 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.138 0.862 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.865 10.735 -4.018 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 C -0.195 4.195 4 C -0.023 4.023 5 N -0.316 5.316 6 C 0.141 3.859 7 C -0.577 4.577 8 H 0.069 0.931 9 C -0.190 4.190 10 N -0.567 5.567 11 Si 0.788 3.212 12 H -0.191 1.191 13 H -0.193 1.193 14 H -0.208 1.208 15 C 0.265 3.735 16 O -0.474 6.474 17 C 0.082 3.918 18 H 0.163 0.837 19 O -0.350 6.350 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.136 4.136 23 C -0.136 4.136 24 C -0.145 4.145 25 C -0.145 4.145 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.049 0.951 36 H 0.010 0.990 37 H 0.076 0.924 38 H 0.237 0.763 39 H 0.170 0.830 40 H 0.175 0.825 41 H 0.168 0.832 42 H 0.155 0.845 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 15.449 10.637 -4.398 19.265 hybrid contribution -0.736 -1.524 1.198 2.073 sum 14.713 9.113 -3.200 17.600 Atomic orbital electron populations 1.21837 0.95937 1.00457 1.02035 1.21622 0.96082 0.98253 0.97223 1.21756 1.02021 0.92836 1.02880 1.22127 1.01390 0.79495 0.99302 1.48121 1.25119 1.09020 1.49355 1.18807 0.82404 0.94078 0.90572 1.21697 0.94480 1.43767 0.97775 0.93126 1.25819 0.94701 0.95302 1.03165 1.70062 1.01381 1.47313 1.37937 0.85424 0.78590 0.77957 0.79219 1.19149 1.19303 1.20804 1.21883 0.87288 0.85595 0.78735 1.90620 1.74110 1.21136 1.61507 1.20792 0.87492 0.95687 0.87794 0.83653 1.86504 1.90018 1.23076 1.35361 1.20178 0.98275 0.95441 0.99061 1.21327 0.97164 0.96846 0.97538 1.21535 0.96293 0.99685 0.96040 1.21592 1.00086 0.92152 0.99779 1.21378 0.96939 0.99769 0.96453 1.21086 0.97810 0.97613 0.97992 0.92807 0.91186 0.95690 0.91419 0.90518 0.91231 0.92032 0.90528 0.88436 0.95077 0.99006 0.92434 0.76335 0.83010 0.82461 0.83201 0.84459 0.87188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 8.33 71.98 0.60 -3.77 16 2 C -0.11 -2.89 2.85 -10.79 -0.03 -2.92 16 3 C -0.14 -2.35 9.19 71.98 0.66 -1.69 16 4 C 0.10 3.11 4.47 86.38 0.39 3.49 16 5 N -0.59 -25.28 2.19 -826.17 -1.81 -27.08 16 6 C 0.26 14.33 4.28 85.63 0.37 14.69 16 7 C -0.54 -31.31 9.39 25.60 0.24 -31.07 16 8 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 9 C 0.01 0.53 5.46 84.65 0.46 0.99 16 10 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 11 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 15 C 0.48 20.73 6.76 87.66 0.59 21.33 16 16 O -0.59 -31.53 15.88 15.21 0.24 -31.29 16 17 C 0.14 4.66 2.89 29.10 0.08 4.75 16 18 H 0.15 3.86 5.65 -2.39 -0.01 3.85 16 19 O -0.54 -17.80 13.04 -130.75 -1.70 -19.51 16 20 C -0.13 -3.76 4.76 -19.86 -0.09 -3.86 16 21 C -0.11 -2.53 8.28 22.27 0.18 -2.35 16 22 C -0.12 -2.32 10.05 22.27 0.22 -2.09 16 23 C -0.12 -2.45 10.05 22.27 0.22 -2.23 16 24 C -0.13 -3.19 10.05 22.27 0.22 -2.96 16 25 C -0.13 -3.82 9.19 22.27 0.20 -3.61 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.02 0.93 6.33 -2.39 -0.02 0.91 16 29 H 0.07 1.76 7.11 -2.38 -0.02 1.74 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 2.56 8.03 -2.38 -0.02 2.54 16 34 H 0.10 2.49 3.41 -2.39 -0.01 2.48 16 35 H 0.03 1.72 6.63 -2.39 -0.02 1.70 16 36 H -0.01 -0.52 7.35 -2.39 -0.02 -0.54 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.39 11.87 7.36 -74.06 -0.55 11.33 16 39 H 0.15 2.53 6.62 -2.91 -0.02 2.51 16 40 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 43 H 0.11 3.44 7.12 -2.91 -0.02 3.42 16 Total: -1.00 -76.45 347.90 3.84 -72.61 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.47 Total: 25.51 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 4.33 Total: -11.30 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -1.52 Total: -83.31 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -1.46 Total: -50.79 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -76.45 3.84 -72.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219916075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.288 kcal (2) G-P(sol) polarization free energy of solvation -76.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds