Wall clock time and date at job start Tue Mar 31 2020 07:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46864 * 2 1 4 4 H 1.09000 * 109.50792 * 305.08460 * 3 2 1 5 5 C 1.53093 * 109.50575 * 184.99737 * 3 2 1 6 6 N 1.47016 * 109.25769 * 183.21833 * 5 3 2 7 7 C 1.46901 * 110.99855 * 182.39402 * 6 5 3 8 8 C 1.50697 * 109.46975 * 170.00112 * 7 6 5 9 9 C 1.38297 * 119.93561 * 89.99546 * 8 7 6 10 10 C 1.38101 * 120.07198 * 180.02562 * 9 8 7 11 11 C 1.38880 * 119.93052 * 0.02562 * 10 9 8 12 12 O 1.35747 * 120.07077 * 179.97438 * 11 10 9 13 13 C 1.34837 * 117.00182 * 5.52923 * 12 11 10 14 14 H 1.08005 * 119.99586 * 354.94796 * 13 12 11 15 15 C 1.38648 * 120.00300 * 174.94167 * 13 12 11 16 16 N 1.31550 * 120.00175 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99863 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47192 * 269.99785 * 17 15 13 19 19 H 1.48502 * 109.47427 * 30.00008 * 17 15 13 20 20 H 1.48502 * 109.47125 * 150.00290 * 17 15 13 21 21 C 1.38877 * 119.85872 * 0.24972 * 11 10 9 22 22 C 1.38100 * 119.93592 * 359.49136 * 21 11 10 23 23 C 1.47008 * 110.75300 * 58.61505 * 6 5 3 24 24 C 1.53103 * 109.25847 * 301.38368 * 23 6 5 25 25 O 1.43009 * 109.25446 * 56.85297 * 24 23 6 26 26 H 1.09001 * 109.46773 * 60.00359 * 1 2 3 27 27 H 1.08995 * 109.46876 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47444 * 300.00226 * 1 2 3 29 29 H 1.08997 * 109.47444 * 239.99773 * 2 1 3 30 30 H 1.09001 * 109.46773 * 119.99641 * 2 1 3 31 31 H 1.08997 * 109.50662 * 63.27942 * 5 3 2 32 32 H 1.09004 * 109.50843 * 303.15215 * 5 3 2 33 33 H 1.08996 * 109.47788 * 49.99635 * 7 6 5 34 34 H 1.09000 * 109.47113 * 289.99549 * 7 6 5 35 35 H 1.07997 * 119.96505 * 0.04941 * 9 8 7 36 36 H 1.07999 * 120.03507 * 180.02562 * 10 9 8 37 37 H 0.97004 * 120.00071 * 180.02562 * 16 15 13 38 38 H 1.08006 * 120.03540 * 179.72770 * 21 11 10 39 39 H 1.07994 * 119.97092 * 180.27776 * 22 21 11 40 40 H 1.09004 * 109.50880 * 61.32097 * 23 6 5 41 41 H 1.09008 * 109.50432 * 181.44931 * 23 6 5 42 42 H 1.08998 * 109.50248 * 296.91303 * 24 23 6 43 43 H 1.09000 * 109.54136 * 176.80955 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6045 1.9826 -0.8407 5 6 3.5658 1.4454 -0.1257 6 7 4.0562 2.8291 -0.0476 7 6 5.5139 2.8816 -0.2211 8 6 5.9495 4.3153 -0.3810 9 6 6.2869 5.0625 0.7328 10 6 6.6859 6.3768 0.5895 11 6 6.7476 6.9484 -0.6747 12 8 7.1390 8.2402 -0.8188 13 6 7.5637 8.8785 0.2904 14 1 7.5048 8.3887 1.2512 15 6 8.0760 10.1635 0.1975 16 7 8.4908 10.7860 1.2796 17 14 8.1773 11.0107 -1.4642 18 1 9.4879 10.7097 -2.0943 19 1 7.0829 10.5180 -2.3387 20 1 8.0418 12.4781 -1.2807 21 6 6.4027 6.1972 -1.7907 22 6 6.0096 4.8818 -1.6414 23 6 3.6538 3.4536 1.2210 24 6 2.1270 3.4306 1.3332 25 8 1.6664 2.0812 1.2239 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8529 1.0109 -1.0832 32 1 3.9989 0.8594 0.6850 33 1 5.7949 2.3153 -1.1091 34 1 5.9998 2.4498 0.6539 35 1 6.2387 4.6175 1.7156 36 1 6.9497 6.9595 1.4597 37 1 8.8490 11.6852 1.2147 38 1 6.4454 6.6402 -2.7748 39 1 5.7455 4.2958 -2.5093 40 1 4.0883 2.8998 2.0533 41 1 4.0052 4.4852 1.2464 42 1 1.6942 4.0291 0.5316 43 1 1.8261 3.8411 2.2970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264578034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:57 Heat of formation + Delta-G solvation = -48.196383 kcal Electronic energy + Delta-G solvation = -22981.267396 eV Core-core repulsion = 19606.021483 eV Total energy + Delta-G solvation = -3375.245913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.95258 -39.10873 -37.16770 -35.40097 -34.16532 -32.42960 -30.52623 -30.37327 -29.96602 -27.37386 -25.47168 -24.15550 -23.95550 -22.06996 -21.64287 -20.50297 -20.22506 -17.90101 -17.28731 -16.61811 -16.40795 -15.46166 -15.23561 -14.97684 -14.71688 -14.33723 -14.02442 -13.98706 -13.88539 -13.72798 -13.40409 -13.33344 -12.71217 -12.54082 -12.24471 -12.12609 -11.89802 -11.70872 -11.48168 -11.27674 -11.24555 -11.18131 -10.85163 -10.71604 -10.65892 -10.45679 -10.17694 -9.65568 -9.40948 -8.89234 -8.39648 -8.25515 -7.33900 -6.43883 -4.10613 2.10030 2.14870 3.20514 3.24293 3.39022 3.62147 3.81901 4.21902 4.52693 4.56071 4.76956 4.84386 4.92290 4.94124 5.04388 5.09212 5.12198 5.21269 5.23281 5.37098 5.43400 5.46896 5.57770 5.63215 5.69165 5.70127 5.70571 5.78182 5.81348 5.89564 5.99311 6.08017 6.10504 6.31319 6.54849 6.76006 6.89251 6.95748 7.06363 7.12498 7.23526 7.29161 7.59017 7.77556 8.01542 8.91416 9.53781 10.63718 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034427 B = 0.002932 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.115856 B = 9546.062873 C = 9740.591899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.093 3.907 4 H 0.066 0.934 5 C 0.023 3.977 6 N -0.531 5.531 7 C 0.112 3.888 8 C -0.172 4.172 9 C -0.067 4.067 10 C -0.221 4.221 11 C 0.162 3.838 12 O -0.217 6.217 13 C -0.390 4.390 14 H 0.106 0.894 15 C 0.063 3.937 16 N -0.879 5.879 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.259 1.259 20 H -0.282 1.282 21 C -0.194 4.194 22 C -0.054 4.054 23 C 0.016 3.984 24 C 0.065 3.935 25 O -0.383 6.383 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.280 0.720 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.038 0.962 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.251 -18.902 -2.666 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.035 3.965 4 H 0.084 0.916 5 C -0.105 4.105 6 N -0.256 5.256 7 C -0.014 4.014 8 C -0.173 4.173 9 C -0.086 4.086 10 C -0.240 4.240 11 C 0.109 3.891 12 O -0.122 6.122 13 C -0.465 4.465 14 H 0.124 0.876 15 C -0.140 4.140 16 N -0.517 5.517 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.183 1.183 20 H -0.208 1.208 21 C -0.213 4.213 22 C -0.073 4.073 23 C -0.112 4.112 24 C -0.012 4.012 25 O -0.302 6.302 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.123 0.877 36 H 0.150 0.850 37 H 0.090 0.910 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.056 0.944 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.461 -18.366 -3.001 21.856 hybrid contribution 0.793 0.260 0.066 0.837 sum -10.667 -18.107 -2.935 21.219 Atomic orbital electron populations 1.21698 0.95099 1.01389 1.02398 1.21525 0.96862 0.94342 1.02603 1.22189 0.92834 0.93873 0.87575 0.91599 1.22798 0.95995 0.90080 1.01668 1.62270 1.13141 1.16168 1.34031 1.20821 0.85849 0.94451 1.00308 1.19116 1.09218 0.95416 0.93584 1.20646 0.97363 0.93617 0.97000 1.21236 1.08770 0.96159 0.97875 1.19139 0.92529 0.84212 0.93179 1.83576 1.72334 1.19657 1.36632 1.20764 1.41088 0.98695 0.85988 0.87649 1.24468 0.95156 0.95583 0.98795 1.69644 1.40021 1.13993 1.28062 0.86180 0.79655 0.78066 0.82996 1.19882 1.18336 1.20772 1.20212 1.09731 0.94339 0.97013 1.20446 0.97056 0.93673 0.96120 1.22848 0.96415 1.01783 0.90178 1.22658 0.92905 0.83335 1.02289 1.87945 1.76887 1.26690 1.38722 0.92844 0.92859 0.91928 0.90612 0.91293 0.89933 0.94297 0.90647 0.94755 0.87693 0.85011 0.91030 0.86562 0.86924 0.94380 0.88545 0.92281 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.81 37.16 0.36 -0.78 16 2 C -0.12 -0.94 5.64 -26.73 -0.15 -1.09 16 3 C 0.09 0.96 2.80 -26.68 -0.07 0.89 16 4 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 5 C 0.02 0.24 4.93 -3.71 -0.02 0.22 16 6 N -0.53 -6.76 4.72 -235.75 -1.11 -7.87 16 7 C 0.11 1.47 5.11 -4.98 -0.03 1.45 16 8 C -0.17 -2.78 4.90 -104.58 -0.51 -3.29 16 9 C -0.07 -1.19 7.92 -39.61 -0.31 -1.50 16 10 C -0.22 -4.68 9.17 -39.39 -0.36 -5.04 16 11 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 12 O -0.22 -5.70 8.59 0.04 0.00 -5.70 16 13 C -0.39 -10.92 9.95 30.88 0.31 -10.61 16 14 H 0.11 3.01 5.44 -52.48 -0.29 2.72 16 15 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 16 N -0.88 -25.30 13.96 55.48 0.77 -24.52 16 17 Si 0.91 21.59 28.62 -169.99 -4.86 16.73 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.19 -3.80 9.99 -39.40 -0.39 -4.19 16 22 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 23 C 0.02 0.20 5.27 -3.71 -0.02 0.18 16 24 C 0.07 0.75 7.01 37.21 0.26 1.01 16 25 O -0.38 -4.62 10.02 -35.23 -0.35 -4.97 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.55 7.83 -51.93 -0.41 0.15 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.89 7.98 -51.93 -0.41 0.48 16 34 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 35 H 0.11 1.62 8.00 -52.49 -0.42 1.20 16 36 H 0.13 2.95 5.64 -52.49 -0.30 2.65 16 37 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.12 2.14 8.06 -52.48 -0.42 1.71 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 1.36 6.01 -51.92 -0.31 1.05 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 346.32 15.07 5.22 5.22 Total: -1.00 -29.29 346.32 -8.77 -38.07 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.76 Total: 1.99 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -1.68 Total: -18.94 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: -0.34 Total: -32.40 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.35 Total: -10.67 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.86 Total: 16.73 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.29 -8.77 -38.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264578034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.131 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds