Wall clock time and date at job start Tue Mar 31 2020 07:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46864 * 2 1 4 4 H 1.09000 * 109.50792 * 305.08460 * 3 2 1 5 5 C 1.53093 * 109.50575 * 184.99737 * 3 2 1 6 6 N 1.47016 * 109.25769 * 183.21833 * 5 3 2 7 7 C 1.46901 * 110.99855 * 182.39402 * 6 5 3 8 8 C 1.50697 * 109.46975 * 170.00112 * 7 6 5 9 9 C 1.38297 * 119.93561 * 89.99546 * 8 7 6 10 10 C 1.38101 * 120.07198 * 180.02562 * 9 8 7 11 11 C 1.38880 * 119.93052 * 0.02562 * 10 9 8 12 12 O 1.35747 * 120.07077 * 179.97438 * 11 10 9 13 13 C 1.34837 * 117.00182 * 5.52923 * 12 11 10 14 14 H 1.08005 * 119.99586 * 354.94796 * 13 12 11 15 15 C 1.38648 * 120.00300 * 174.94167 * 13 12 11 16 16 N 1.31550 * 120.00175 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99863 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47192 * 269.99785 * 17 15 13 19 19 H 1.48502 * 109.47427 * 30.00008 * 17 15 13 20 20 H 1.48502 * 109.47125 * 150.00290 * 17 15 13 21 21 C 1.38877 * 119.85872 * 0.24972 * 11 10 9 22 22 C 1.38100 * 119.93592 * 359.49136 * 21 11 10 23 23 C 1.47008 * 110.75300 * 58.61505 * 6 5 3 24 24 C 1.53103 * 109.25847 * 301.38368 * 23 6 5 25 25 O 1.43009 * 109.25446 * 56.85297 * 24 23 6 26 26 H 1.09001 * 109.46773 * 60.00359 * 1 2 3 27 27 H 1.08995 * 109.46876 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47444 * 300.00226 * 1 2 3 29 29 H 1.08997 * 109.47444 * 239.99773 * 2 1 3 30 30 H 1.09001 * 109.46773 * 119.99641 * 2 1 3 31 31 H 1.08997 * 109.50662 * 63.27942 * 5 3 2 32 32 H 1.09004 * 109.50843 * 303.15215 * 5 3 2 33 33 H 1.08996 * 109.47788 * 49.99635 * 7 6 5 34 34 H 1.09000 * 109.47113 * 289.99549 * 7 6 5 35 35 H 1.07997 * 119.96505 * 0.04941 * 9 8 7 36 36 H 1.07999 * 120.03507 * 180.02562 * 10 9 8 37 37 H 0.97004 * 120.00071 * 180.02562 * 16 15 13 38 38 H 1.08006 * 120.03540 * 179.72770 * 21 11 10 39 39 H 1.07994 * 119.97092 * 180.27776 * 22 21 11 40 40 H 1.09004 * 109.50880 * 61.32097 * 23 6 5 41 41 H 1.09008 * 109.50432 * 181.44931 * 23 6 5 42 42 H 1.08998 * 109.50248 * 296.91303 * 24 23 6 43 43 H 1.09000 * 109.54136 * 176.80955 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6045 1.9826 -0.8407 5 6 3.5658 1.4454 -0.1257 6 7 4.0562 2.8291 -0.0476 7 6 5.5139 2.8816 -0.2211 8 6 5.9495 4.3153 -0.3810 9 6 6.2869 5.0625 0.7328 10 6 6.6859 6.3768 0.5895 11 6 6.7476 6.9484 -0.6747 12 8 7.1390 8.2402 -0.8188 13 6 7.5637 8.8785 0.2904 14 1 7.5048 8.3887 1.2512 15 6 8.0760 10.1635 0.1975 16 7 8.4908 10.7860 1.2796 17 14 8.1773 11.0107 -1.4642 18 1 9.4879 10.7097 -2.0943 19 1 7.0829 10.5180 -2.3387 20 1 8.0418 12.4781 -1.2807 21 6 6.4027 6.1972 -1.7907 22 6 6.0096 4.8818 -1.6414 23 6 3.6538 3.4536 1.2210 24 6 2.1270 3.4306 1.3332 25 8 1.6664 2.0812 1.2239 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8529 1.0109 -1.0832 32 1 3.9989 0.8594 0.6850 33 1 5.7949 2.3153 -1.1091 34 1 5.9998 2.4498 0.6539 35 1 6.2387 4.6175 1.7156 36 1 6.9497 6.9595 1.4597 37 1 8.8490 11.6852 1.2147 38 1 6.4454 6.6402 -2.7748 39 1 5.7455 4.2958 -2.5093 40 1 4.0883 2.8998 2.0533 41 1 4.0052 4.4852 1.2464 42 1 1.6942 4.0291 0.5316 43 1 1.8261 3.8411 2.2970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264578034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:57 Heat of formation + Delta-G solvation = -66.311690 kcal Electronic energy + Delta-G solvation = -22982.052935 eV Core-core repulsion = 19606.021483 eV Total energy + Delta-G solvation = -3376.031451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.11828 -40.53101 -38.66654 -36.56120 -34.89678 -34.46363 -31.92638 -31.81558 -30.85994 -28.58942 -27.22560 -25.16767 -25.04136 -23.63675 -22.56705 -21.66003 -21.33778 -19.80426 -19.08899 -17.48562 -17.35034 -16.71955 -16.61813 -16.19352 -15.81568 -15.68850 -15.55112 -15.52945 -15.09461 -14.77002 -14.55391 -14.35881 -14.28084 -14.05516 -13.94622 -13.08290 -12.99092 -12.78499 -12.73357 -12.48577 -12.43085 -12.39478 -12.09470 -11.96404 -11.88757 -11.76131 -11.31585 -11.27502 -10.90782 -10.56897 -9.79332 -9.38967 -8.97644 -8.50783 -6.23391 0.56299 0.61174 1.31085 1.35011 1.51693 2.27539 2.63364 2.81390 2.92700 3.10216 3.24294 3.74700 3.93519 3.96823 4.03599 4.13308 4.16629 4.19110 4.23155 4.40178 4.44404 4.46301 4.57564 4.62001 4.65543 4.71869 4.79370 4.83897 4.85915 4.97783 4.98874 5.04368 5.12963 5.24830 5.28225 5.36340 5.46751 5.57027 5.73685 5.78777 5.89910 5.98176 6.04036 6.24220 6.25930 6.83679 7.58310 8.60860 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034427 B = 0.002932 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.115856 B = 9546.062873 C = 9740.591899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C 0.089 3.911 4 H 0.061 0.939 5 C 0.026 3.974 6 N -0.540 5.540 7 C 0.114 3.886 8 C -0.146 4.146 9 C -0.066 4.066 10 C -0.237 4.237 11 C 0.121 3.879 12 O -0.245 6.245 13 C -0.399 4.399 14 H 0.080 0.920 15 C 0.009 3.991 16 N -0.924 5.924 17 Si 0.971 3.029 18 H -0.265 1.265 19 H -0.263 1.263 20 H -0.268 1.268 21 C -0.192 4.192 22 C -0.047 4.047 23 C 0.017 3.983 24 C 0.067 3.933 25 O -0.395 6.395 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.040 0.960 33 H 0.101 0.899 34 H 0.043 0.957 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.285 0.715 38 H 0.128 0.872 39 H 0.153 0.847 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.277 -21.974 -4.701 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C 0.031 3.969 4 H 0.079 0.921 5 C -0.102 4.102 6 N -0.265 5.265 7 C -0.013 4.013 8 C -0.147 4.147 9 C -0.084 4.084 10 C -0.256 4.256 11 C 0.072 3.928 12 O -0.153 6.153 13 C -0.475 4.475 14 H 0.098 0.902 15 C -0.189 4.189 16 N -0.565 5.565 17 Si 0.793 3.207 18 H -0.190 1.190 19 H -0.187 1.187 20 H -0.192 1.192 21 C -0.212 4.212 22 C -0.066 4.066 23 C -0.111 4.111 24 C -0.010 4.010 25 O -0.314 6.314 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.058 0.942 33 H 0.119 0.881 34 H 0.061 0.939 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.094 0.906 38 H 0.146 0.854 39 H 0.170 0.830 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.506 -21.491 -5.037 25.370 hybrid contribution 0.959 0.834 0.726 1.464 sum -11.547 -20.657 -4.310 24.054 Atomic orbital electron populations 1.21687 0.95032 1.02093 1.01696 1.21543 0.96896 0.92943 1.03529 1.22362 0.92867 0.94925 0.86720 0.92083 1.22868 0.95884 0.88609 1.02856 1.62224 1.12592 1.17828 1.33886 1.20860 0.86376 0.91997 1.02030 1.19589 1.05551 0.96867 0.92741 1.20865 0.96486 0.92164 0.98899 1.21222 1.09953 0.97686 0.96728 1.19683 0.94332 0.83858 0.94939 1.83517 1.74797 1.21470 1.35501 1.20698 1.41581 0.99248 0.85993 0.90232 1.25287 0.94995 0.96161 1.02464 1.69729 1.41994 1.14749 1.29999 0.85210 0.79589 0.77490 0.78375 1.19033 1.18698 1.19225 1.20532 1.08830 0.95263 0.96529 1.20898 0.95299 0.92602 0.97755 1.22793 0.97123 1.00697 0.90491 1.22648 0.92163 0.83425 1.02781 1.87948 1.77070 1.26691 1.39741 0.92666 0.91484 0.93513 0.88497 0.91479 0.87820 0.94153 0.88063 0.93925 0.85608 0.87622 0.90575 0.85387 0.82972 0.94258 0.90409 0.92841 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.81 71.98 0.71 -1.24 16 2 C -0.11 -1.46 5.64 30.60 0.17 -1.29 16 3 C 0.09 1.58 2.80 30.63 0.09 1.66 16 4 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 5 C 0.03 0.44 4.93 86.31 0.43 0.86 16 6 N -0.54 -11.83 4.72 -899.78 -4.24 -16.08 16 7 C 0.11 2.49 5.11 85.56 0.44 2.93 16 8 C -0.15 -4.28 4.90 -19.83 -0.10 -4.38 16 9 C -0.07 -2.24 7.92 22.25 0.18 -2.07 16 10 C -0.24 -10.38 9.17 22.39 0.21 -10.18 16 11 C 0.12 5.66 6.65 22.58 0.15 5.81 16 12 O -0.25 -13.40 8.59 -22.77 -0.20 -13.59 16 13 C -0.40 -23.66 9.95 67.92 0.68 -22.98 16 14 H 0.08 4.95 5.44 -2.91 -0.02 4.93 16 15 C 0.01 0.54 5.49 84.83 0.47 1.00 16 16 N -0.92 -55.51 13.96 21.61 0.30 -55.20 16 17 Si 0.97 45.64 28.62 68.60 1.96 47.60 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 C -0.19 -7.29 9.99 22.39 0.22 -7.06 16 22 C -0.05 -1.42 9.69 22.25 0.22 -1.21 16 23 C 0.02 0.40 5.27 86.32 0.46 0.86 16 24 C 0.07 1.44 7.01 72.02 0.50 1.95 16 25 O -0.40 -8.75 10.02 -148.98 -1.49 -10.24 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.76 7.83 -2.39 -0.02 0.74 16 29 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.37 8.09 -2.39 -0.02 1.36 16 32 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.10 1.79 7.98 -2.39 -0.02 1.77 16 34 H 0.04 0.91 8.06 -2.39 -0.02 0.89 16 35 H 0.13 3.73 8.00 -2.91 -0.02 3.71 16 36 H 0.11 5.14 5.64 -2.91 -0.02 5.12 16 37 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 39 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 40 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.08 2.10 6.01 -2.38 -0.01 2.09 16 42 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -66.46 346.32 2.12 -64.34 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.98 Total: 18.49 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 4.80 Total: -35.32 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -3.94 Total: -71.28 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -1.69 Total: -23.84 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.96 Total: 47.60 kcal Total: -66.46 2.12 -64.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264578034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.969 kcal (2) G-P(sol) polarization free energy of solvation -66.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds