Wall clock time and date at job start Tue Mar 31 2020 07:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47216 * 2 1 4 4 H 1.09004 * 109.46979 * 305.00066 * 3 2 1 5 5 C 1.53002 * 109.47137 * 185.00240 * 3 2 1 6 6 C 1.50693 * 109.47108 * 64.99800 * 5 3 2 7 7 O 1.21294 * 120.00532 * 0.02562 * 6 5 3 8 8 N 1.34783 * 119.99913 * 179.97438 * 6 5 3 9 9 C 1.46495 * 119.99765 * 0.02562 * 8 6 5 10 10 C 1.37098 * 120.00004 * 180.02562 * 8 6 5 11 11 H 1.08002 * 120.00136 * 24.39443 * 10 8 6 12 12 C 1.38949 * 119.99819 * 204.39814 * 10 8 6 13 13 N 1.31411 * 120.00181 * 12.64049 * 12 10 8 14 14 Si 1.86795 * 119.99950 * 192.63697 * 12 10 8 15 15 H 1.48503 * 109.46965 * 89.99948 * 14 12 10 16 16 H 1.48502 * 109.47345 * 209.99984 * 14 12 10 17 17 H 1.48500 * 109.47367 * 330.00361 * 14 12 10 18 18 C 1.50694 * 109.47024 * 65.00073 * 3 2 1 19 19 C 1.38261 * 119.94500 * 59.72773 * 18 3 2 20 20 C 1.38154 * 120.05602 * 179.72388 * 19 18 3 21 21 C 1.38739 * 119.94189 * 0.55109 * 20 19 18 22 22 O 1.35892 * 120.05386 * 179.74813 * 21 20 19 23 23 C 1.42899 * 117.00272 * 359.97438 * 22 21 20 24 24 C 1.38729 * 119.88651 * 359.72448 * 21 20 19 25 25 C 1.38152 * 119.94794 * 359.97438 * 24 21 20 26 26 H 1.09001 * 109.47268 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47227 * 299.99748 * 1 2 3 28 28 H 1.09001 * 109.47548 * 59.99718 * 1 2 3 29 29 H 1.08996 * 109.47538 * 119.99787 * 2 1 3 30 30 H 1.09001 * 109.47227 * 240.00252 * 2 1 3 31 31 H 1.09003 * 109.46761 * 184.99858 * 5 3 2 32 32 H 1.08995 * 109.47038 * 304.99725 * 5 3 2 33 33 H 1.09008 * 109.47068 * 85.85978 * 9 8 6 34 34 H 1.09002 * 109.47405 * 205.85418 * 9 8 6 35 35 H 1.08997 * 109.47419 * 325.85832 * 9 8 6 36 36 H 0.97001 * 120.00410 * 179.97438 * 13 12 10 37 37 H 1.08003 * 119.97389 * 0.02562 * 19 18 3 38 38 H 1.07996 * 120.03051 * 180.27094 * 20 19 18 39 39 H 1.08998 * 109.47515 * 179.97438 * 23 22 21 40 40 H 1.08996 * 109.47316 * 299.99973 * 23 22 21 41 41 H 1.09006 * 109.47152 * 60.00131 * 23 22 21 42 42 H 1.07999 * 120.02882 * 179.97438 * 24 21 20 43 43 H 1.08000 * 119.97384 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 6 3.9588 0.8821 -1.4672 7 8 3.1042 0.5164 -2.2464 8 7 5.2610 0.7866 -1.8018 9 6 6.2932 1.2289 -0.8610 10 6 5.6195 0.2756 -3.0224 11 1 4.9259 0.3155 -3.8493 12 6 6.8751 -0.2936 -3.1956 13 7 7.6214 -0.5695 -2.1498 14 14 7.5023 -0.6668 -4.9151 15 1 8.2379 0.5116 -5.4402 16 1 8.4140 -1.8380 -4.8662 17 1 6.3536 -0.9704 -5.8060 18 6 1.6413 2.1163 1.2877 19 6 2.0728 1.6037 2.4971 20 6 1.7135 2.2228 3.6787 21 6 0.9094 3.3532 3.6515 22 8 0.5503 3.9610 4.8127 23 6 1.0362 3.3819 6.0254 24 6 0.4731 3.8621 2.4370 25 6 0.8404 3.2429 1.2578 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.9355 2.4656 -0.0367 32 1 3.9954 0.8312 0.6658 33 1 6.5315 0.4162 -0.1746 34 1 7.1895 1.5133 -1.4123 35 1 5.9268 2.0860 -0.2961 36 1 8.4979 -0.9672 -2.2706 37 1 2.6954 0.7214 2.5179 38 1 2.0544 1.8247 4.6229 39 1 0.6773 3.9630 6.8749 40 1 0.6762 2.3564 6.1081 41 1 2.1263 3.3849 6.0182 42 1 -0.1533 4.7416 2.4132 43 1 0.5012 3.6390 0.3121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269732694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:06 Heat of formation + Delta-G solvation = -54.650185 kcal Electronic energy + Delta-G solvation = -23297.760081 eV Core-core repulsion = 19922.234310 eV Total energy + Delta-G solvation = -3375.525770 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.26063 -38.86387 -37.69652 -35.18080 -34.16417 -31.65211 -31.04827 -30.33024 -29.17639 -27.34742 -26.20585 -24.84160 -23.38224 -22.88693 -21.90421 -19.97268 -18.48465 -18.20765 -16.84445 -16.51024 -15.92006 -15.84264 -15.09362 -14.71797 -14.40160 -14.19886 -14.14458 -13.95553 -13.65416 -13.38861 -13.10637 -12.64392 -12.57136 -12.23191 -12.06045 -11.67616 -11.60345 -11.32443 -11.24442 -11.12989 -10.97390 -10.94575 -10.86745 -10.43337 -10.32548 -10.23431 -10.14954 -10.05011 -8.97137 -8.94573 -8.26980 -7.98325 -7.60551 -6.28764 -3.84820 1.39258 1.48924 3.18260 3.18473 3.26720 3.32255 3.81180 3.96254 4.17368 4.74371 4.81061 4.88500 4.95320 4.97139 5.13875 5.20675 5.25339 5.28647 5.45682 5.51202 5.57342 5.64281 5.71099 5.85824 5.97419 6.01236 6.10674 6.16049 6.30436 6.33020 6.36877 6.43948 6.47584 6.52065 6.65008 6.79830 6.87865 6.92474 7.02867 7.22335 7.35492 7.59961 8.19555 8.53665 9.23876 9.48212 10.05212 10.76250 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026902 B = 0.003399 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.573330 B = 8236.143472 C = 8784.699817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.025 4.025 4 H 0.083 0.917 5 C -0.122 4.122 6 C 0.449 3.551 7 O -0.586 6.586 8 N -0.449 5.449 9 C 0.113 3.887 10 C -0.305 4.305 11 H 0.097 0.903 12 C 0.029 3.971 13 N -0.884 5.884 14 Si 0.924 3.076 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C -0.095 4.095 19 C -0.075 4.075 20 C -0.205 4.205 21 C 0.111 3.889 22 O -0.322 6.322 23 C 0.029 3.971 24 C -0.151 4.151 25 C -0.079 4.079 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.025 0.975 36 H 0.266 0.734 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.126 0.874 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.533 6.502 13.985 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.044 4.044 4 H 0.101 0.899 5 C -0.163 4.163 6 C 0.238 3.762 7 O -0.471 6.471 8 N -0.168 5.168 9 C -0.031 4.031 10 C -0.433 4.433 11 H 0.115 0.885 12 C -0.174 4.174 13 N -0.523 5.523 14 Si 0.751 3.249 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.194 1.194 18 C -0.095 4.095 19 C -0.093 4.093 20 C -0.224 4.224 21 C 0.067 3.933 22 O -0.236 6.236 23 C -0.067 4.067 24 C -0.169 4.169 25 C -0.097 4.097 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.144 0.856 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.844 6.404 13.663 18.016 hybrid contribution 0.845 -0.413 -0.388 1.018 sum -8.999 5.991 13.274 17.119 Atomic orbital electron populations 1.21716 0.96599 1.00737 1.01119 1.21702 0.95211 0.95609 1.03194 1.19873 0.94590 0.96560 0.93392 0.89909 1.21604 0.95539 1.01629 0.97486 1.20076 0.83204 0.84394 0.88572 1.90473 1.49295 1.54367 1.52978 1.43598 1.03868 1.53809 1.15565 1.21452 0.92345 0.96424 0.92917 1.19644 1.00044 1.35708 0.87901 0.88510 1.25331 0.97164 0.95937 0.98918 1.69993 1.11651 1.41726 1.28976 0.85953 0.78768 0.77835 0.82309 1.20449 1.21016 1.19394 1.19976 0.98297 0.95959 0.95311 1.20850 0.98219 0.99020 0.91213 1.21191 1.03717 0.98089 0.99377 1.18990 0.95701 0.92648 0.85982 1.86035 1.71211 1.53419 1.12940 1.23006 0.99552 0.99209 0.84893 1.20371 1.04480 1.02358 0.89716 1.20933 0.96683 0.94728 0.97358 0.93487 0.93503 0.92906 0.93145 0.88811 0.90635 0.90486 0.93154 0.90870 0.95641 0.92360 0.85716 0.85815 0.88537 0.92786 0.92710 0.85585 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.73 37.15 0.36 -1.71 16 2 C -0.12 -1.99 5.08 -26.73 -0.14 -2.12 16 3 C -0.03 -0.41 1.68 -91.77 -0.15 -0.57 16 4 H 0.08 1.44 7.69 -51.93 -0.40 1.04 16 5 C -0.12 -2.22 3.52 -27.89 -0.10 -2.32 16 6 C 0.45 10.70 7.31 -10.99 -0.08 10.62 16 7 O -0.59 -15.58 13.70 5.55 0.08 -15.50 16 8 N -0.45 -11.52 3.01 -122.19 -0.37 -11.88 16 9 C 0.11 2.52 8.44 59.84 0.51 3.03 16 10 C -0.30 -8.53 9.24 -14.93 -0.14 -8.67 16 11 H 0.10 2.83 7.45 -52.49 -0.39 2.44 16 12 C 0.03 0.78 5.04 -17.47 -0.09 0.69 16 13 N -0.88 -23.73 10.83 55.50 0.60 -23.13 16 14 Si 0.92 20.90 29.57 -169.99 -5.03 15.88 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 C -0.10 -1.33 3.76 -104.60 -0.39 -1.72 16 19 C -0.07 -0.98 8.70 -39.60 -0.34 -1.32 16 20 C -0.21 -2.45 9.04 -39.43 -0.36 -2.81 16 21 C 0.11 1.39 6.69 -39.21 -0.26 1.13 16 22 O -0.32 -3.71 10.50 -19.40 -0.20 -3.91 16 23 C 0.03 0.22 9.81 101.05 0.99 1.21 16 24 C -0.15 -1.86 9.99 -39.43 -0.39 -2.26 16 25 C -0.08 -1.02 9.66 -39.60 -0.38 -1.40 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.63 7.38 -51.93 -0.38 0.24 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.78 7.20 -51.93 -0.37 0.40 16 30 H 0.09 1.90 5.88 -51.93 -0.31 1.59 16 31 H 0.08 1.28 7.41 -51.93 -0.38 0.90 16 32 H 0.08 1.32 7.54 -51.93 -0.39 0.93 16 33 H 0.05 1.15 7.83 -51.92 -0.41 0.75 16 34 H 0.07 1.74 6.80 -51.93 -0.35 1.39 16 35 H 0.03 0.47 6.61 -51.93 -0.34 0.13 16 36 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.12 1.55 7.12 -52.48 -0.37 1.18 16 38 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 41 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 42 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.13 1.48 7.94 -52.49 -0.42 1.06 16 LS Contribution 345.90 15.07 5.21 5.21 Total: -1.00 -30.96 345.90 -7.15 -38.12 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.47 Total: 3.44 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -0.97 Total: -8.21 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.23 Total: -35.02 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.13 Total: -19.41 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.96 -7.15 -38.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269732694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.534 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds