Wall clock time and date at job start Tue Mar 31 2020 07:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47216 * 2 1 4 4 H 1.09004 * 109.46979 * 305.00066 * 3 2 1 5 5 C 1.53002 * 109.47137 * 185.00240 * 3 2 1 6 6 C 1.50693 * 109.47108 * 64.99800 * 5 3 2 7 7 O 1.21294 * 120.00532 * 0.02562 * 6 5 3 8 8 N 1.34783 * 119.99913 * 179.97438 * 6 5 3 9 9 C 1.46495 * 119.99765 * 0.02562 * 8 6 5 10 10 C 1.37098 * 120.00004 * 180.02562 * 8 6 5 11 11 H 1.08002 * 120.00136 * 24.39443 * 10 8 6 12 12 C 1.38949 * 119.99819 * 204.39814 * 10 8 6 13 13 N 1.31411 * 120.00181 * 12.64049 * 12 10 8 14 14 Si 1.86795 * 119.99950 * 192.63697 * 12 10 8 15 15 H 1.48503 * 109.46965 * 89.99948 * 14 12 10 16 16 H 1.48502 * 109.47345 * 209.99984 * 14 12 10 17 17 H 1.48500 * 109.47367 * 330.00361 * 14 12 10 18 18 C 1.50694 * 109.47024 * 65.00073 * 3 2 1 19 19 C 1.38261 * 119.94500 * 59.72773 * 18 3 2 20 20 C 1.38154 * 120.05602 * 179.72388 * 19 18 3 21 21 C 1.38739 * 119.94189 * 0.55109 * 20 19 18 22 22 O 1.35892 * 120.05386 * 179.74813 * 21 20 19 23 23 C 1.42899 * 117.00272 * 359.97438 * 22 21 20 24 24 C 1.38729 * 119.88651 * 359.72448 * 21 20 19 25 25 C 1.38152 * 119.94794 * 359.97438 * 24 21 20 26 26 H 1.09001 * 109.47268 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47227 * 299.99748 * 1 2 3 28 28 H 1.09001 * 109.47548 * 59.99718 * 1 2 3 29 29 H 1.08996 * 109.47538 * 119.99787 * 2 1 3 30 30 H 1.09001 * 109.47227 * 240.00252 * 2 1 3 31 31 H 1.09003 * 109.46761 * 184.99858 * 5 3 2 32 32 H 1.08995 * 109.47038 * 304.99725 * 5 3 2 33 33 H 1.09008 * 109.47068 * 85.85978 * 9 8 6 34 34 H 1.09002 * 109.47405 * 205.85418 * 9 8 6 35 35 H 1.08997 * 109.47419 * 325.85832 * 9 8 6 36 36 H 0.97001 * 120.00410 * 179.97438 * 13 12 10 37 37 H 1.08003 * 119.97389 * 0.02562 * 19 18 3 38 38 H 1.07996 * 120.03051 * 180.27094 * 20 19 18 39 39 H 1.08998 * 109.47515 * 179.97438 * 23 22 21 40 40 H 1.08996 * 109.47316 * 299.99973 * 23 22 21 41 41 H 1.09006 * 109.47152 * 60.00131 * 23 22 21 42 42 H 1.07999 * 120.02882 * 179.97438 * 24 21 20 43 43 H 1.08000 * 119.97384 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 6 3.9588 0.8821 -1.4672 7 8 3.1042 0.5164 -2.2464 8 7 5.2610 0.7866 -1.8018 9 6 6.2932 1.2289 -0.8610 10 6 5.6195 0.2756 -3.0224 11 1 4.9259 0.3155 -3.8493 12 6 6.8751 -0.2936 -3.1956 13 7 7.6214 -0.5695 -2.1498 14 14 7.5023 -0.6668 -4.9151 15 1 8.2379 0.5116 -5.4402 16 1 8.4140 -1.8380 -4.8662 17 1 6.3536 -0.9704 -5.8060 18 6 1.6413 2.1163 1.2877 19 6 2.0728 1.6037 2.4971 20 6 1.7135 2.2228 3.6787 21 6 0.9094 3.3532 3.6515 22 8 0.5503 3.9610 4.8127 23 6 1.0362 3.3819 6.0254 24 6 0.4731 3.8621 2.4370 25 6 0.8404 3.2429 1.2578 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.9355 2.4656 -0.0367 32 1 3.9954 0.8312 0.6658 33 1 6.5315 0.4162 -0.1746 34 1 7.1895 1.5133 -1.4123 35 1 5.9268 2.0860 -0.2961 36 1 8.4979 -0.9672 -2.2706 37 1 2.6954 0.7214 2.5179 38 1 2.0544 1.8247 4.6229 39 1 0.6773 3.9630 6.8749 40 1 0.6762 2.3564 6.1081 41 1 2.1263 3.3849 6.0182 42 1 -0.1533 4.7416 2.4132 43 1 0.5012 3.6390 0.3121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269732694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:05 Heat of formation + Delta-G solvation = -71.668908 kcal Electronic energy + Delta-G solvation = -23298.498068 eV Core-core repulsion = 19922.234310 eV Total energy + Delta-G solvation = -3376.263758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.25947 -40.43726 -38.88436 -36.82529 -35.71074 -33.65751 -31.98624 -31.58458 -30.35737 -28.32157 -27.87181 -26.52618 -24.91155 -23.92951 -22.91673 -21.33272 -20.13444 -19.06611 -18.83602 -17.97403 -17.21909 -16.58878 -16.57271 -16.18011 -15.92148 -15.91454 -15.45345 -15.08221 -14.80315 -14.48749 -14.29213 -14.03978 -13.97406 -13.46163 -13.32900 -13.23863 -13.11605 -12.78891 -12.74950 -12.64733 -12.38972 -12.25493 -12.11198 -12.05032 -11.93004 -11.57329 -11.46884 -11.33849 -10.96281 -10.16648 -9.88847 -9.61216 -8.96880 -8.31567 -5.96067 0.45418 0.50548 1.37828 1.40810 1.52889 2.09754 2.29434 2.44136 2.83143 3.11187 3.15249 3.80323 3.85019 4.00085 4.07445 4.21153 4.32564 4.37405 4.40422 4.43688 4.50662 4.57078 4.60875 4.63556 4.72261 4.76557 4.79822 4.92928 5.00707 5.02986 5.12789 5.19025 5.26075 5.34704 5.37580 5.43312 5.45480 5.46662 5.62892 5.83132 5.87843 6.14690 6.51080 6.53069 7.21421 7.53075 8.10542 8.71591 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026902 B = 0.003399 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.573330 B = 8236.143472 C = 8784.699817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C -0.016 4.016 4 H 0.065 0.935 5 C -0.110 4.110 6 C 0.441 3.559 7 O -0.621 6.621 8 N -0.469 5.469 9 C 0.123 3.877 10 C -0.342 4.342 11 H 0.070 0.930 12 C -0.004 4.004 13 N -0.898 5.898 14 Si 0.987 3.013 15 H -0.266 1.266 16 H -0.274 1.274 17 H -0.277 1.277 18 C -0.106 4.106 19 C -0.080 4.080 20 C -0.204 4.204 21 C 0.109 3.891 22 O -0.336 6.336 23 C 0.019 3.981 24 C -0.158 4.158 25 C -0.081 4.081 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.272 0.728 37 H 0.130 0.870 38 H 0.147 0.853 39 H 0.118 0.882 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.139 0.861 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.555 7.193 15.950 19.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C -0.035 4.035 4 H 0.084 0.916 5 C -0.150 4.150 6 C 0.231 3.769 7 O -0.508 6.508 8 N -0.189 5.189 9 C -0.020 4.020 10 C -0.470 4.470 11 H 0.088 0.912 12 C -0.205 4.205 13 N -0.537 5.537 14 Si 0.811 3.189 15 H -0.191 1.191 16 H -0.199 1.199 17 H -0.202 1.202 18 C -0.107 4.107 19 C -0.098 4.098 20 C -0.222 4.222 21 C 0.064 3.936 22 O -0.250 6.250 23 C -0.076 4.076 24 C -0.176 4.176 25 C -0.099 4.099 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.148 0.852 38 H 0.164 0.836 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.157 0.843 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.855 7.106 15.661 19.821 hybrid contribution 0.803 -0.615 -0.899 1.353 sum -9.052 6.492 14.761 18.493 Atomic orbital electron populations 1.21635 0.94859 1.01436 1.01427 1.21617 0.96800 0.95629 1.01517 1.19698 0.92988 0.96376 0.94395 0.91626 1.21567 0.97175 1.02216 0.93997 1.21068 0.82346 0.83311 0.90134 1.90448 1.50185 1.55527 1.54666 1.43881 1.05153 1.54302 1.15536 1.21387 0.91189 0.97382 0.92071 1.19591 1.00665 1.38015 0.88729 0.91239 1.26058 0.96680 0.95168 1.02631 1.70061 1.11863 1.41383 1.30431 0.85030 0.77927 0.78233 0.77737 1.19107 1.19925 1.20160 1.19703 0.99933 0.96771 0.94256 1.20941 0.98322 0.99272 0.91229 1.21395 1.03198 0.97730 0.99913 1.19172 0.95288 0.92623 0.86517 1.86027 1.71431 1.53922 1.13612 1.23313 1.00211 1.00123 0.83927 1.20561 1.04617 1.02795 0.89628 1.21026 0.96420 0.94401 0.98098 0.92620 0.92130 0.93548 0.92017 0.93086 0.88893 0.89009 0.93987 0.92657 0.91744 0.91841 0.85236 0.83557 0.86350 0.91878 0.91944 0.84268 0.84684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.73 71.98 0.70 -3.13 16 2 C -0.12 -3.93 5.08 30.59 0.16 -3.78 16 3 C -0.02 -0.50 1.68 -11.54 -0.02 -0.52 16 4 H 0.07 2.32 7.69 -2.38 -0.02 2.30 16 5 C -0.11 -3.91 3.52 29.85 0.11 -3.81 16 6 C 0.44 21.51 7.31 87.65 0.64 22.15 16 7 O -0.62 -34.50 13.70 -3.07 -0.04 -34.54 16 8 N -0.47 -24.54 3.01 -658.89 -1.98 -26.52 16 9 C 0.12 5.48 8.44 127.77 1.08 6.56 16 10 C -0.34 -19.74 9.24 84.04 0.78 -18.96 16 11 H 0.07 4.29 7.45 -2.91 -0.02 4.27 16 12 C 0.00 -0.22 5.04 84.93 0.43 0.21 16 13 N -0.90 -48.30 10.83 21.66 0.23 -48.07 16 14 Si 0.99 43.16 29.57 68.60 2.03 45.18 16 15 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 18 C -0.11 -2.81 3.76 -19.85 -0.07 -2.88 16 19 C -0.08 -1.90 8.70 22.26 0.19 -1.70 16 20 C -0.20 -4.29 9.04 22.37 0.20 -4.09 16 21 C 0.11 2.44 6.69 22.51 0.15 2.59 16 22 O -0.34 -6.83 10.50 -92.34 -0.97 -7.79 16 23 C 0.02 0.22 9.81 113.37 1.11 1.33 16 24 C -0.16 -3.56 9.99 22.37 0.22 -3.34 16 25 C -0.08 -1.97 9.66 22.26 0.22 -1.75 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.54 7.38 -2.39 -0.02 1.52 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.87 7.20 -2.39 -0.02 1.85 16 30 H 0.05 2.15 5.88 -2.39 -0.01 2.13 16 31 H 0.09 3.00 7.41 -2.39 -0.02 2.98 16 32 H 0.09 3.02 7.54 -2.39 -0.02 3.00 16 33 H 0.04 1.91 7.83 -2.38 -0.02 1.89 16 34 H 0.05 2.63 6.80 -2.39 -0.02 2.61 16 35 H 0.06 2.31 6.61 -2.39 -0.02 2.30 16 36 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 37 H 0.13 2.91 7.12 -2.91 -0.02 2.89 16 38 H 0.15 2.33 6.30 -2.91 -0.02 2.31 16 39 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.65 7.66 -2.39 -0.02 0.63 16 41 H 0.06 0.66 7.66 -2.38 -0.02 0.64 16 42 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 43 H 0.14 2.97 7.94 -2.91 -0.02 2.95 16 Total: -1.00 -68.26 345.90 6.15 -62.11 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.99 Total: 20.76 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 5.89 Total: -11.13 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.75 Total: -74.59 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -1.01 Total: -42.34 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -68.26 6.15 -62.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269732694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.562 kcal (2) G-P(sol) polarization free energy of solvation -68.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds