Wall clock time and date at job start Tue Mar 31 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46879 * 2 1 4 4 C 1.53004 * 109.47096 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47202 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99675 * 270.00172 * 5 4 3 7 7 C 1.53003 * 109.47048 * 279.08190 * 6 5 4 8 8 O 1.42904 * 109.46738 * 65.00427 * 7 6 5 9 9 C 1.34778 * 119.99906 * 89.99766 * 5 4 3 10 10 O 1.21582 * 119.99854 * 6.79229 * 9 5 4 11 11 C 1.47635 * 119.99841 * 186.79026 * 9 5 4 12 12 C 1.40014 * 119.89503 * 149.37268 * 11 9 5 13 13 C 1.36315 * 120.10796 * 180.25776 * 12 11 9 14 14 C 1.40892 * 119.88994 * 359.51634 * 13 12 11 15 15 C 1.41104 * 120.10173 * 180.23357 * 14 13 12 16 16 H 1.08009 * 119.99996 * 206.49778 * 15 14 13 17 17 C 1.40230 * 120.00568 * 26.49621 * 15 14 13 18 18 N 1.30649 * 119.99372 * 25.74349 * 17 15 14 19 19 Si 1.86796 * 120.00604 * 205.74220 * 17 15 14 20 20 H 1.48497 * 109.47035 * 94.98788 * 19 17 15 21 21 H 1.48501 * 109.47037 * 214.98964 * 19 17 15 22 22 H 1.48504 * 109.46713 * 334.98828 * 19 17 15 23 23 C 1.40882 * 119.79193 * 0.50368 * 14 13 12 24 24 C 1.36311 * 119.89550 * 359.72821 * 23 14 13 25 25 H 1.09004 * 109.46949 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47569 * 59.99751 * 1 2 3 27 27 H 1.08998 * 109.46683 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46650 * 240.00421 * 2 1 3 29 29 H 1.08991 * 109.47138 * 119.99935 * 2 1 3 30 30 H 1.09001 * 109.47383 * 60.00024 * 3 2 1 31 31 H 1.09002 * 109.47318 * 300.00398 * 3 2 1 32 32 H 1.09001 * 109.47245 * 59.99621 * 4 3 2 33 33 H 1.09001 * 109.46671 * 299.99897 * 4 3 2 34 34 H 1.08997 * 109.47687 * 39.08767 * 6 5 4 35 35 H 1.08999 * 109.46579 * 159.08747 * 6 5 4 36 36 H 1.08999 * 109.47372 * 185.00144 * 7 6 5 37 37 H 1.09000 * 109.47474 * 305.00767 * 7 6 5 38 38 H 0.96705 * 113.99725 * 179.97438 * 8 7 6 39 39 H 1.08000 * 119.94706 * 359.97155 * 12 11 9 40 40 H 1.08001 * 120.05673 * 179.71626 * 13 12 11 41 41 H 0.96999 * 120.00050 * 180.02562 * 18 17 15 42 42 H 1.08002 * 120.05393 * 179.70942 * 23 14 13 43 43 H 1.08003 * 119.95257 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.3019 3.5140 -1.2703 7 6 5.6639 3.0935 -1.8263 8 8 5.6365 1.7023 -2.1518 9 6 4.2834 3.4595 1.1657 10 8 4.2007 2.8512 2.2151 11 6 4.6304 4.8945 1.1696 12 6 4.2540 5.7006 2.2508 13 6 4.5675 7.0272 2.2565 14 6 5.2804 7.5848 1.1767 15 6 5.6115 8.9564 1.1802 16 1 5.7541 9.4800 0.2463 17 6 5.7556 9.6399 2.3962 18 7 6.0846 8.9857 3.4782 19 14 5.4772 11.4856 2.4690 20 1 4.0790 11.7591 2.8879 21 1 6.4149 12.0893 3.4495 22 1 5.7164 12.0755 1.1273 23 6 5.6565 6.7698 0.0908 24 6 5.3344 5.4453 0.0918 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9330 0.9288 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 3.5210 3.2498 -1.9834 35 1 4.2938 4.5914 -1.1053 36 1 5.8846 3.6722 -2.7233 37 1 6.4343 3.2763 -1.0773 38 1 6.4690 1.3660 -2.5111 39 1 3.7104 5.2715 3.0795 40 1 4.2728 7.6491 3.0888 41 1 6.1839 9.4583 4.3194 42 1 6.1989 7.1938 -0.7413 43 1 5.6226 4.8196 -0.7400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270271954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:19 Heat of formation + Delta-G solvation = -60.767135 kcal Electronic energy + Delta-G solvation = -23355.960840 eV Core-core repulsion = 19980.169819 eV Total energy + Delta-G solvation = -3375.791021 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.76282 -37.28592 -36.93692 -35.58263 -34.36108 -33.71199 -30.80341 -30.04863 -28.97980 -28.10529 -25.89459 -23.51570 -22.85767 -21.49272 -21.17518 -20.72225 -18.72151 -17.90681 -17.16331 -16.55340 -15.84311 -15.42281 -15.11862 -15.06865 -14.42597 -14.22345 -13.61952 -13.51507 -13.36244 -13.14726 -12.85717 -12.62727 -12.37876 -12.26871 -12.03663 -11.58728 -11.48426 -11.38219 -11.21552 -11.20121 -11.03749 -10.99573 -10.77072 -10.60923 -10.38275 -10.08367 -9.89495 -9.44100 -9.29682 -8.86085 -8.15667 -7.69188 -7.57590 -7.07604 -4.57983 2.28675 2.89747 2.94330 2.98527 2.99435 3.56788 3.74412 3.78825 4.28223 4.45608 5.00738 5.01740 5.16440 5.20552 5.24440 5.36896 5.44514 5.51972 5.73019 5.73966 5.78686 5.84450 5.88185 5.94875 6.04775 6.09097 6.13804 6.21131 6.24409 6.42015 6.49983 6.77699 6.81764 6.97679 7.05861 7.13192 7.42021 7.57734 7.59787 7.75858 7.85471 8.02329 8.15856 8.39676 8.61695 8.74120 9.05329 9.87276 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022528 B = 0.003654 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.606989 B = 7660.194446 C = 8325.085236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.134 4.134 4 C 0.118 3.882 5 N -0.611 5.611 6 C 0.082 3.918 7 C 0.053 3.947 8 O -0.569 6.569 9 C 0.571 3.429 10 O -0.566 6.566 11 C -0.280 4.280 12 C -0.036 4.036 13 C -0.183 4.183 14 C 0.130 3.870 15 C -0.453 4.453 16 H 0.086 0.914 17 C 0.080 3.920 18 N -0.762 5.762 19 Si 0.907 3.093 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.258 1.258 23 C -0.234 4.234 24 C -0.081 4.081 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.136 0.864 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.373 0.627 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.288 0.712 42 H 0.097 0.903 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.465 -8.438 -9.237 12.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.173 4.173 4 C -0.004 4.004 5 N -0.343 5.343 6 C -0.041 4.041 7 C -0.026 4.026 8 O -0.374 6.374 9 C 0.366 3.634 10 O -0.447 6.447 11 C -0.284 4.284 12 C -0.055 4.055 13 C -0.202 4.202 14 C 0.127 3.873 15 C -0.480 4.480 16 H 0.104 0.896 17 C -0.143 4.143 18 N -0.384 5.384 19 Si 0.730 3.270 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.182 1.182 23 C -0.254 4.254 24 C -0.099 4.099 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.153 0.847 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.220 0.780 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.047 -8.682 -8.199 12.609 hybrid contribution 0.599 0.846 -0.098 1.041 sum -3.448 -7.836 -8.297 11.922 Atomic orbital electron populations 1.21759 0.96054 1.01189 1.01801 1.21432 0.95669 0.96842 1.01865 1.21981 0.96577 0.96568 1.02171 1.21397 0.92776 0.83189 1.03082 1.47674 1.67287 1.13750 1.05636 1.22477 0.95030 1.00988 0.85628 1.22841 0.99040 0.82118 0.98603 1.86484 1.39735 1.24776 1.86420 1.18732 0.74938 0.87418 0.82290 1.90639 1.54266 1.68237 1.31554 1.18871 1.17446 0.91763 1.00335 1.20373 0.96795 0.93585 0.94778 1.20796 1.04120 0.94164 1.01134 1.17723 0.86567 0.92601 0.90395 1.19774 1.40407 0.94345 0.93454 0.89608 1.26075 0.91641 1.01590 0.94967 1.69791 1.27766 1.39618 1.01177 0.86310 0.79474 0.81595 0.79583 1.18933 1.20053 1.18206 1.20683 1.09222 0.93527 1.01931 1.21157 0.97142 0.95696 0.95936 0.92768 0.92903 0.93020 0.92128 0.91992 0.91860 0.92284 0.89838 0.90765 0.91190 0.84719 0.92725 0.92684 0.78015 0.88590 0.87297 0.90100 0.88453 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.37 5.93 -26.73 -0.16 -1.53 16 3 C -0.13 -1.88 5.54 -26.73 -0.15 -2.02 16 4 C 0.12 1.85 5.29 -4.04 -0.02 1.83 16 5 N -0.61 -10.77 2.48 -174.87 -0.43 -11.20 16 6 C 0.08 1.20 5.35 -4.04 -0.02 1.18 16 7 C 0.05 0.66 6.19 37.16 0.23 0.89 16 8 O -0.57 -6.69 11.70 -35.23 -0.41 -7.10 16 9 C 0.57 12.51 7.44 -12.42 -0.09 12.41 16 10 O -0.57 -14.08 16.26 5.29 0.09 -14.00 16 11 C -0.28 -6.39 5.60 -104.73 -0.59 -6.97 16 12 C -0.04 -0.88 9.52 -39.61 -0.38 -1.26 16 13 C -0.18 -4.63 8.67 -39.27 -0.34 -4.97 16 14 C 0.13 3.26 5.53 -106.81 -0.59 2.67 16 15 C -0.45 -11.13 8.98 -37.75 -0.34 -11.47 16 16 H 0.09 2.00 7.97 -52.48 -0.42 1.58 16 17 C 0.08 1.89 4.92 -17.31 -0.09 1.80 16 18 N -0.76 -18.69 11.61 55.56 0.64 -18.04 16 19 Si 0.91 17.27 29.63 -169.99 -5.04 12.24 16 20 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 21 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 23 C -0.23 -5.27 9.73 -39.28 -0.38 -5.65 16 24 C -0.08 -1.68 7.39 -39.61 -0.29 -1.97 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.20 6.32 -51.93 -0.33 0.87 16 33 H 0.07 1.29 7.34 -51.93 -0.38 0.91 16 34 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 35 H 0.14 2.14 3.98 -52.27 -0.21 1.93 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.77 7.27 -51.93 -0.38 0.40 16 38 H 0.37 2.75 9.12 45.56 0.42 3.17 16 39 H 0.10 2.31 7.92 -52.49 -0.42 1.89 16 40 H 0.11 2.81 6.59 -52.49 -0.35 2.47 16 41 H 0.29 6.36 8.29 -40.82 -0.34 6.02 16 42 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 43 H 0.12 1.98 2.72 -52.48 -0.14 1.83 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -29.57 347.83 -8.31 -37.88 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.56 Total: 11.20 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -2.84 Total: -16.21 kcal Atomic # 7 Polarization: -29.45 SS G_CDS: 0.21 Total: -29.24 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.33 Total: -21.10 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.04 Total: 12.24 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.57 -8.31 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270271954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.884 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds