Wall clock time and date at job start Tue Mar 31 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46879 * 2 1 4 4 C 1.53004 * 109.47096 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47202 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99675 * 270.00172 * 5 4 3 7 7 C 1.53003 * 109.47048 * 279.08190 * 6 5 4 8 8 O 1.42904 * 109.46738 * 65.00427 * 7 6 5 9 9 C 1.34778 * 119.99906 * 89.99766 * 5 4 3 10 10 O 1.21582 * 119.99854 * 6.79229 * 9 5 4 11 11 C 1.47635 * 119.99841 * 186.79026 * 9 5 4 12 12 C 1.40014 * 119.89503 * 149.37268 * 11 9 5 13 13 C 1.36315 * 120.10796 * 180.25776 * 12 11 9 14 14 C 1.40892 * 119.88994 * 359.51634 * 13 12 11 15 15 C 1.41104 * 120.10173 * 180.23357 * 14 13 12 16 16 H 1.08009 * 119.99996 * 206.49778 * 15 14 13 17 17 C 1.40230 * 120.00568 * 26.49621 * 15 14 13 18 18 N 1.30649 * 119.99372 * 25.74349 * 17 15 14 19 19 Si 1.86796 * 120.00604 * 205.74220 * 17 15 14 20 20 H 1.48497 * 109.47035 * 94.98788 * 19 17 15 21 21 H 1.48501 * 109.47037 * 214.98964 * 19 17 15 22 22 H 1.48504 * 109.46713 * 334.98828 * 19 17 15 23 23 C 1.40882 * 119.79193 * 0.50368 * 14 13 12 24 24 C 1.36311 * 119.89550 * 359.72821 * 23 14 13 25 25 H 1.09004 * 109.46949 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47569 * 59.99751 * 1 2 3 27 27 H 1.08998 * 109.46683 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46650 * 240.00421 * 2 1 3 29 29 H 1.08991 * 109.47138 * 119.99935 * 2 1 3 30 30 H 1.09001 * 109.47383 * 60.00024 * 3 2 1 31 31 H 1.09002 * 109.47318 * 300.00398 * 3 2 1 32 32 H 1.09001 * 109.47245 * 59.99621 * 4 3 2 33 33 H 1.09001 * 109.46671 * 299.99897 * 4 3 2 34 34 H 1.08997 * 109.47687 * 39.08767 * 6 5 4 35 35 H 1.08999 * 109.46579 * 159.08747 * 6 5 4 36 36 H 1.08999 * 109.47372 * 185.00144 * 7 6 5 37 37 H 1.09000 * 109.47474 * 305.00767 * 7 6 5 38 38 H 0.96705 * 113.99725 * 179.97438 * 8 7 6 39 39 H 1.08000 * 119.94706 * 359.97155 * 12 11 9 40 40 H 1.08001 * 120.05673 * 179.71626 * 13 12 11 41 41 H 0.96999 * 120.00050 * 180.02562 * 18 17 15 42 42 H 1.08002 * 120.05393 * 179.70942 * 23 14 13 43 43 H 1.08003 * 119.95257 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.3019 3.5140 -1.2703 7 6 5.6639 3.0935 -1.8263 8 8 5.6365 1.7023 -2.1518 9 6 4.2834 3.4595 1.1657 10 8 4.2007 2.8512 2.2151 11 6 4.6304 4.8945 1.1696 12 6 4.2540 5.7006 2.2508 13 6 4.5675 7.0272 2.2565 14 6 5.2804 7.5848 1.1767 15 6 5.6115 8.9564 1.1802 16 1 5.7541 9.4800 0.2463 17 6 5.7556 9.6399 2.3962 18 7 6.0846 8.9857 3.4782 19 14 5.4772 11.4856 2.4690 20 1 4.0790 11.7591 2.8879 21 1 6.4149 12.0893 3.4495 22 1 5.7164 12.0755 1.1273 23 6 5.6565 6.7698 0.0908 24 6 5.3344 5.4453 0.0918 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9330 0.9288 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 3.5210 3.2498 -1.9834 35 1 4.2938 4.5914 -1.1053 36 1 5.8846 3.6722 -2.7233 37 1 6.4343 3.2763 -1.0773 38 1 6.4690 1.3660 -2.5111 39 1 3.7104 5.2715 3.0795 40 1 4.2728 7.6491 3.0888 41 1 6.1839 9.4583 4.3194 42 1 6.1989 7.1938 -0.7413 43 1 5.6226 4.8196 -0.7400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270271954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:18 Heat of formation + Delta-G solvation = -78.667608 kcal Electronic energy + Delta-G solvation = -23356.737063 eV Core-core repulsion = 19980.169819 eV Total energy + Delta-G solvation = -3376.567244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.34257 -39.01018 -38.16852 -36.78195 -35.88200 -35.17541 -32.28918 -31.83496 -30.43907 -29.39031 -27.58498 -24.83372 -24.08241 -23.18136 -22.66873 -22.00725 -20.24937 -19.55785 -18.40639 -18.02067 -17.29274 -17.10883 -16.49007 -16.21009 -15.96229 -15.63982 -15.14890 -14.85457 -14.61724 -14.51212 -14.27805 -14.07480 -13.82551 -13.72656 -13.41575 -13.16413 -13.05134 -12.81434 -12.69610 -12.40742 -12.29776 -12.21517 -12.00382 -11.96202 -11.72296 -11.47457 -11.25073 -11.08057 -10.86259 -10.58633 -9.67058 -9.48928 -9.38227 -8.84340 -6.44979 0.49802 1.09737 1.37059 1.43090 1.53642 2.01730 2.15507 2.19468 2.68757 3.34354 3.62802 3.82576 3.99609 4.08157 4.10084 4.22572 4.28350 4.35150 4.37322 4.47083 4.55613 4.64916 4.74788 4.78812 4.87935 4.93958 4.95896 4.97440 5.02808 5.08453 5.14301 5.24597 5.25422 5.34578 5.43354 5.58363 5.71569 5.77697 5.95288 6.00654 6.18833 6.53095 6.55792 6.76710 6.89389 6.93583 7.37659 8.13754 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022528 B = 0.003654 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.606989 B = 7660.194446 C = 8325.085236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.128 4.128 4 C 0.120 3.880 5 N -0.602 5.602 6 C 0.072 3.928 7 C 0.058 3.942 8 O -0.579 6.579 9 C 0.566 3.434 10 O -0.608 6.608 11 C -0.292 4.292 12 C -0.051 4.051 13 C -0.203 4.203 14 C 0.104 3.896 15 C -0.479 4.479 16 H 0.095 0.905 17 C 0.040 3.960 18 N -0.799 5.799 19 Si 0.983 3.017 20 H -0.264 1.264 21 H -0.268 1.268 22 H -0.248 1.248 23 C -0.242 4.242 24 C -0.065 4.065 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.039 0.961 38 H 0.395 0.605 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.296 0.704 42 H 0.120 0.880 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.306 -8.672 -12.158 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.166 4.166 4 C -0.002 4.002 5 N -0.332 5.332 6 C -0.049 4.049 7 C -0.021 4.021 8 O -0.388 6.388 9 C 0.361 3.639 10 O -0.492 6.492 11 C -0.296 4.296 12 C -0.070 4.070 13 C -0.222 4.222 14 C 0.101 3.899 15 C -0.506 4.506 16 H 0.113 0.887 17 C -0.180 4.180 18 N -0.422 5.422 19 Si 0.803 3.197 20 H -0.189 1.189 21 H -0.193 1.193 22 H -0.171 1.171 23 C -0.261 4.261 24 C -0.083 4.083 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.141 0.859 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.245 0.755 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.138 0.862 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.876 -8.945 -11.181 14.834 hybrid contribution 0.551 0.784 0.745 1.214 sum -3.325 -8.161 -10.435 13.659 Atomic orbital electron populations 1.21752 0.95003 1.02283 1.01646 1.21416 0.96567 0.94907 1.02498 1.21919 0.95230 0.98324 1.01155 1.21534 0.93856 0.81865 1.02977 1.47714 1.65675 1.14369 1.05451 1.22681 0.97652 1.00070 0.84544 1.22682 0.96555 0.83332 0.99513 1.86408 1.41587 1.24139 1.86653 1.18662 0.75070 0.87128 0.83068 1.90609 1.56338 1.68896 1.33359 1.19116 1.17619 0.92424 1.00455 1.20437 0.97358 0.93774 0.95448 1.20704 1.05720 0.94357 1.01465 1.18082 0.87023 0.93610 0.91163 1.20093 1.41323 0.94662 0.94481 0.88709 1.26985 0.90496 1.06364 0.94122 1.69835 1.28468 1.41846 1.02042 0.85173 0.79202 0.75341 0.80020 1.18875 1.19260 1.17144 1.20982 1.09234 0.94027 1.01899 1.21533 0.95099 0.95568 0.96077 0.93843 0.92183 0.91321 0.90251 0.92582 0.94895 0.91184 0.87609 0.92983 0.88762 0.85912 0.89230 0.94308 0.75508 0.89648 0.89055 0.89332 0.86160 0.82531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.91 71.98 0.71 -2.05 16 2 C -0.12 -2.44 5.93 30.60 0.18 -2.26 16 3 C -0.13 -3.44 5.54 30.60 0.17 -3.27 16 4 C 0.12 3.61 5.29 86.38 0.46 4.07 16 5 N -0.60 -20.60 2.48 -825.44 -2.05 -22.65 16 6 C 0.07 1.93 5.35 86.38 0.46 2.39 16 7 C 0.06 1.23 6.19 71.98 0.45 1.68 16 8 O -0.58 -11.34 11.70 -148.98 -1.74 -13.08 16 9 C 0.57 25.22 7.44 86.72 0.65 25.87 16 10 O -0.61 -31.44 16.26 -3.97 -0.06 -31.50 16 11 C -0.29 -13.58 5.60 -19.93 -0.11 -13.69 16 12 C -0.05 -2.61 9.52 22.25 0.21 -2.40 16 13 C -0.20 -10.80 8.67 22.47 0.19 -10.60 16 14 C 0.10 5.34 5.53 -21.28 -0.12 5.22 16 15 C -0.48 -23.77 8.98 23.46 0.21 -23.56 16 16 H 0.09 4.38 7.97 -2.91 -0.02 4.36 16 17 C 0.04 1.91 4.92 85.35 0.42 2.33 16 18 N -0.80 -40.31 11.61 21.87 0.25 -40.06 16 19 Si 0.98 35.23 29.63 68.60 2.03 37.26 16 20 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 21 H -0.27 -9.20 7.11 99.48 0.71 -8.50 16 22 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 23 C -0.24 -10.75 9.73 22.47 0.22 -10.53 16 24 C -0.07 -2.64 7.39 22.25 0.16 -2.48 16 25 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.11 2.74 6.32 -2.39 -0.02 2.73 16 33 H 0.05 1.81 7.34 -2.39 -0.02 1.80 16 34 H 0.09 2.12 8.13 -2.39 -0.02 2.10 16 35 H 0.12 3.60 3.98 -2.70 -0.01 3.59 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.04 0.97 7.27 -2.39 -0.02 0.95 16 38 H 0.39 4.21 9.12 -74.05 -0.68 3.54 16 39 H 0.09 4.43 7.92 -2.91 -0.02 4.40 16 40 H 0.09 5.04 6.59 -2.91 -0.02 5.02 16 41 H 0.30 13.39 8.29 -92.71 -0.77 12.62 16 42 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 43 H 0.16 4.98 2.72 -2.91 -0.01 4.97 16 Total: -1.00 -66.90 347.83 3.04 -63.86 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: 0.34 Total: 35.48 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 4.27 Total: -29.30 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -1.79 Total: -62.71 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -1.81 Total: -44.59 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 2.03 Total: 37.26 kcal Total: -66.90 3.04 -63.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270271954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.811 kcal (2) G-P(sol) polarization free energy of solvation -66.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds