Wall clock time and date at job start Tue Mar 31 2020 07:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47264 * 2 1 4 4 H 1.09002 * 109.46867 * 184.63247 * 3 2 1 5 5 C 1.52999 * 109.46857 * 304.62743 * 3 2 1 6 6 C 1.53004 * 109.47384 * 293.42333 * 5 3 2 7 7 O 1.42902 * 109.47315 * 185.13015 * 6 5 3 8 8 C 1.52991 * 109.47343 * 64.62831 * 3 2 1 9 9 N 1.46502 * 109.47059 * 65.00092 * 8 3 2 10 10 C 1.34776 * 119.99735 * 180.02562 * 9 8 3 11 11 O 1.21582 * 120.00679 * 359.97438 * 10 9 8 12 12 C 1.47642 * 119.99733 * 179.97438 * 10 9 8 13 13 C 1.40014 * 119.89951 * 359.72357 * 12 10 9 14 14 C 1.36315 * 120.10926 * 179.75938 * 13 12 10 15 15 C 1.40883 * 119.89313 * 0.51398 * 14 13 12 16 16 C 1.41105 * 120.10649 * 179.71739 * 15 14 13 17 17 H 1.08001 * 120.00385 * 157.22121 * 16 15 14 18 18 C 1.40225 * 120.00052 * 337.22271 * 16 15 14 19 19 N 1.30651 * 119.99980 * 331.09287 * 18 16 15 20 20 Si 1.86799 * 120.00255 * 151.08986 * 18 16 15 21 21 H 1.48500 * 109.47169 * 94.96495 * 20 18 16 22 22 H 1.48506 * 109.47180 * 214.96800 * 20 18 16 23 23 H 1.48497 * 109.46957 * 334.96681 * 20 18 16 24 24 C 1.40893 * 119.79387 * 359.73815 * 15 14 13 25 25 C 1.36320 * 119.89101 * 0.02562 * 24 15 14 26 26 H 1.09000 * 109.47203 * 59.58462 * 1 2 3 27 27 H 1.09005 * 109.47328 * 299.58218 * 1 2 3 28 28 H 1.09003 * 109.47406 * 179.57986 * 1 2 3 29 29 H 1.08998 * 109.47212 * 119.99886 * 2 1 3 30 30 H 1.09006 * 109.47216 * 239.99717 * 2 1 3 31 31 H 1.09003 * 109.47167 * 53.42388 * 5 3 2 32 32 H 1.08997 * 109.46997 * 173.42678 * 5 3 2 33 33 H 1.08996 * 109.46980 * 305.13342 * 6 5 3 34 34 H 1.08997 * 109.47083 * 65.12887 * 6 5 3 35 35 H 0.96698 * 113.99887 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.47597 * 185.00194 * 8 3 2 37 37 H 1.09008 * 109.46924 * 305.00115 * 8 3 2 38 38 H 0.96996 * 120.00177 * 0.02562 * 9 8 3 39 39 H 1.07998 * 119.94170 * 0.02562 * 13 12 10 40 40 H 1.08000 * 120.05561 * 180.22937 * 14 13 12 41 41 H 0.96993 * 120.00095 * 180.02562 * 19 18 16 42 42 H 1.07991 * 120.05527 * 179.97438 * 24 15 14 43 43 H 1.07994 * 119.94717 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1268 1.4435 -0.0830 5 6 1.4372 2.1965 -1.1870 6 6 1.9804 1.6113 -2.4921 7 8 1.5120 2.3901 -3.5948 8 6 1.6273 2.1294 1.3033 9 7 2.2999 1.4805 2.4315 10 6 2.0855 1.9203 3.6873 11 8 1.3342 2.8559 3.8839 12 6 2.7629 1.2661 4.8243 13 6 3.6231 0.1852 4.5961 14 6 4.2545 -0.4189 5.6423 15 6 4.0320 0.0390 6.9559 16 6 4.6787 -0.5869 8.0427 17 1 4.8176 -0.0508 8.9700 18 6 5.1411 -1.9049 7.9189 19 7 4.5390 -2.7351 7.1094 20 14 6.6181 -2.4737 8.9111 21 1 6.1528 -3.1292 10.1597 22 1 7.4101 -3.4410 8.1096 23 1 7.4654 -1.3030 9.2528 24 6 3.1615 1.1236 7.1811 25 6 2.5382 1.7245 6.1281 26 1 -0.3633 0.5203 -0.8862 27 1 -0.3634 0.5073 0.8937 28 1 -0.3634 -1.0276 -0.0075 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 0.3519 2.0963 -1.1679 32 1 1.7059 3.2508 -1.1220 33 1 3.0701 1.6284 -2.4721 34 1 1.6352 0.5832 -2.6008 35 1 1.8185 2.0761 -4.4565 36 1 1.9125 3.1807 1.2661 37 1 0.5475 2.0502 1.4296 38 1 2.8995 0.7344 2.2747 39 1 3.7899 -0.1677 3.5891 40 1 4.9208 -1.2503 5.4649 41 1 4.8587 -3.6468 7.0240 42 1 2.9875 1.4778 8.1864 43 1 1.8704 2.5557 6.2998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270360860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:26 Heat of formation + Delta-G solvation = -97.637758 kcal Electronic energy + Delta-G solvation = -22579.582540 eV Core-core repulsion = 19202.192689 eV Total energy + Delta-G solvation = -3377.389852 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.36362 -38.15557 -37.08046 -36.28000 -33.91455 -33.31812 -30.52540 -30.31145 -29.48131 -27.87440 -25.80858 -24.35167 -23.11602 -21.66526 -20.92844 -19.63795 -19.27590 -17.67251 -17.53820 -16.70078 -16.25209 -15.60500 -15.38616 -15.17766 -14.42091 -14.08445 -14.01336 -13.78453 -13.66328 -13.26937 -12.85021 -12.67105 -12.34338 -12.18555 -12.15549 -11.95536 -11.82743 -11.56338 -11.31789 -11.29997 -11.01141 -10.78244 -10.75727 -10.64780 -10.55276 -10.14546 -10.13299 -9.55135 -9.26966 -8.94246 -8.53651 -7.73214 -7.61051 -7.15690 -4.58912 2.25393 2.86286 2.92497 3.00484 3.03062 3.66381 3.70773 3.85864 4.13145 4.51056 4.59383 4.64819 4.84038 4.98279 5.09069 5.19139 5.35150 5.46036 5.50681 5.55482 5.60715 5.75858 5.79206 5.86226 6.01039 6.02743 6.10547 6.15067 6.16563 6.31524 6.37767 6.74706 6.79506 6.95135 7.05652 7.11573 7.32776 7.41747 7.65598 7.75602 7.84840 8.04761 8.27453 8.36095 8.59983 8.74456 9.11955 9.77973 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024035 B = 0.002955 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.707006 B = 9473.803765 C =10135.709490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.123 4.123 3 C -0.097 4.097 4 H 0.078 0.922 5 C -0.117 4.117 6 C 0.076 3.924 7 O -0.577 6.577 8 C 0.128 3.872 9 N -0.741 5.741 10 C 0.571 3.429 11 O -0.577 6.577 12 C -0.291 4.291 13 C -0.057 4.057 14 C -0.188 4.188 15 C 0.130 3.870 16 C -0.446 4.446 17 H 0.087 0.913 18 C 0.083 3.917 19 N -0.756 5.756 20 Si 0.905 3.095 21 H -0.267 1.267 22 H -0.272 1.272 23 H -0.255 1.255 24 C -0.242 4.242 25 C -0.018 4.018 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.378 0.622 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.396 0.604 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.288 0.712 42 H 0.098 0.902 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 0.058 -14.893 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.160 4.160 3 C -0.116 4.116 4 H 0.096 0.904 5 C -0.154 4.154 6 C -0.002 4.002 7 O -0.382 6.382 8 C 0.004 3.996 9 N -0.394 5.394 10 C 0.366 3.634 11 O -0.459 6.459 12 C -0.295 4.295 13 C -0.076 4.076 14 C -0.208 4.208 15 C 0.127 3.873 16 C -0.473 4.473 17 H 0.105 0.895 18 C -0.141 4.141 19 N -0.377 5.377 20 Si 0.727 3.273 21 H -0.192 1.192 22 H -0.196 1.196 23 H -0.179 1.179 24 C -0.262 4.262 25 C -0.037 4.037 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.224 0.776 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.231 0.769 39 H 0.105 0.895 40 H 0.127 0.873 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.519 0.804 -14.366 14.468 hybrid contribution 1.230 -1.224 -0.158 1.742 sum -0.289 -0.420 -14.523 14.532 Atomic orbital electron populations 1.21908 0.95688 1.01701 1.02273 1.21593 0.96639 0.95639 1.02152 1.21347 1.00751 0.95534 0.93996 0.90410 1.21541 1.01887 1.00361 0.91648 1.22235 0.97384 0.93946 0.86598 1.86478 1.76754 1.57661 1.17308 1.21218 0.97704 0.96372 0.84350 1.45895 1.49887 1.37519 1.06127 1.18568 0.80206 0.82199 0.82431 1.90629 1.39512 1.30410 1.85383 1.18857 1.12367 1.05839 0.92436 1.20405 0.95767 0.94462 0.96954 1.20757 1.04768 1.03134 0.92095 1.17719 0.87152 0.89689 0.92725 1.19811 1.30570 0.96917 0.99977 0.89481 1.26111 0.96711 0.96497 0.94822 1.69809 1.33402 1.05438 1.29099 0.86348 0.81302 0.79503 0.80098 1.19163 1.19639 1.17870 1.20671 1.04736 1.03754 0.96997 1.20363 0.95633 0.96217 0.91535 0.92403 0.92036 0.92836 0.91328 0.91967 0.90345 0.90916 0.93703 0.93416 0.77558 0.92138 0.91628 0.76883 0.89481 0.87278 0.90067 0.88420 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.21 37.15 0.34 -1.26 16 2 C -0.12 -1.21 5.31 -26.73 -0.14 -1.35 16 3 C -0.10 -1.00 2.18 -90.62 -0.20 -1.20 16 4 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.12 -1.13 4.76 -26.73 -0.13 -1.25 16 6 C 0.08 0.63 6.71 37.16 0.25 0.88 16 7 O -0.58 -5.20 13.66 -35.23 -0.48 -5.68 16 8 C 0.13 1.78 4.92 -4.05 -0.02 1.76 16 9 N -0.74 -12.28 5.19 -61.32 -0.32 -12.60 16 10 C 0.57 12.25 7.76 -12.42 -0.10 12.16 16 11 O -0.58 -13.98 16.32 5.29 0.09 -13.89 16 12 C -0.29 -6.67 5.89 -104.72 -0.62 -7.29 16 13 C -0.06 -1.25 9.47 -39.61 -0.38 -1.62 16 14 C -0.19 -4.57 8.70 -39.27 -0.34 -4.91 16 15 C 0.13 3.31 5.57 -106.80 -0.59 2.72 16 16 C -0.45 -11.03 8.97 -37.75 -0.34 -11.37 16 17 H 0.09 2.06 7.99 -52.49 -0.42 1.64 16 18 C 0.08 1.90 4.87 -17.31 -0.08 1.82 16 19 N -0.76 -17.87 11.57 55.56 0.64 -17.22 16 20 Si 0.90 16.91 29.65 -169.99 -5.04 11.87 16 21 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 22 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 23 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 24 C -0.24 -5.90 9.73 -39.27 -0.38 -6.28 16 25 C -0.02 -0.44 9.52 -39.60 -0.38 -0.81 16 26 H 0.06 0.53 6.18 -51.93 -0.32 0.21 16 27 H 0.06 0.72 6.47 -51.93 -0.34 0.38 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.75 7.08 -51.93 -0.37 0.38 16 30 H 0.06 0.52 6.96 -51.93 -0.36 0.15 16 31 H 0.08 0.78 5.97 -51.93 -0.31 0.47 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.35 6.97 -51.93 -0.36 -0.01 16 35 H 0.38 1.64 9.12 45.56 0.42 2.05 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.97 6.34 -51.92 -0.33 0.64 16 38 H 0.40 5.84 5.65 -40.82 -0.23 5.61 16 39 H 0.09 1.61 6.37 -52.49 -0.33 1.28 16 40 H 0.11 2.65 6.44 -52.49 -0.34 2.32 16 41 H 0.29 6.07 8.29 -40.82 -0.34 5.73 16 42 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 43 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -29.70 347.52 -8.34 -38.04 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -5.37 Total: 12.27 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -3.10 Total: -18.02 kcal Atomic # 7 Polarization: -30.15 SS G_CDS: 0.32 Total: -29.82 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.39 Total: -19.57 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.04 Total: 11.87 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.70 -8.34 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270360860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.602 kcal (2) G-P(sol) polarization free energy of solvation -29.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds