Wall clock time and date at job start Tue Mar 31 2020 07:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47264 * 2 1 4 4 H 1.09002 * 109.46867 * 184.63247 * 3 2 1 5 5 C 1.52999 * 109.46857 * 304.62743 * 3 2 1 6 6 C 1.53004 * 109.47384 * 293.42333 * 5 3 2 7 7 O 1.42902 * 109.47315 * 185.13015 * 6 5 3 8 8 C 1.52991 * 109.47343 * 64.62831 * 3 2 1 9 9 N 1.46502 * 109.47059 * 65.00092 * 8 3 2 10 10 C 1.34776 * 119.99735 * 180.02562 * 9 8 3 11 11 O 1.21582 * 120.00679 * 359.97438 * 10 9 8 12 12 C 1.47642 * 119.99733 * 179.97438 * 10 9 8 13 13 C 1.40014 * 119.89951 * 359.72357 * 12 10 9 14 14 C 1.36315 * 120.10926 * 179.75938 * 13 12 10 15 15 C 1.40883 * 119.89313 * 0.51398 * 14 13 12 16 16 C 1.41105 * 120.10649 * 179.71739 * 15 14 13 17 17 H 1.08001 * 120.00385 * 157.22121 * 16 15 14 18 18 C 1.40225 * 120.00052 * 337.22271 * 16 15 14 19 19 N 1.30651 * 119.99980 * 331.09287 * 18 16 15 20 20 Si 1.86799 * 120.00255 * 151.08986 * 18 16 15 21 21 H 1.48500 * 109.47169 * 94.96495 * 20 18 16 22 22 H 1.48506 * 109.47180 * 214.96800 * 20 18 16 23 23 H 1.48497 * 109.46957 * 334.96681 * 20 18 16 24 24 C 1.40893 * 119.79387 * 359.73815 * 15 14 13 25 25 C 1.36320 * 119.89101 * 0.02562 * 24 15 14 26 26 H 1.09000 * 109.47203 * 59.58462 * 1 2 3 27 27 H 1.09005 * 109.47328 * 299.58218 * 1 2 3 28 28 H 1.09003 * 109.47406 * 179.57986 * 1 2 3 29 29 H 1.08998 * 109.47212 * 119.99886 * 2 1 3 30 30 H 1.09006 * 109.47216 * 239.99717 * 2 1 3 31 31 H 1.09003 * 109.47167 * 53.42388 * 5 3 2 32 32 H 1.08997 * 109.46997 * 173.42678 * 5 3 2 33 33 H 1.08996 * 109.46980 * 305.13342 * 6 5 3 34 34 H 1.08997 * 109.47083 * 65.12887 * 6 5 3 35 35 H 0.96698 * 113.99887 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.47597 * 185.00194 * 8 3 2 37 37 H 1.09008 * 109.46924 * 305.00115 * 8 3 2 38 38 H 0.96996 * 120.00177 * 0.02562 * 9 8 3 39 39 H 1.07998 * 119.94170 * 0.02562 * 13 12 10 40 40 H 1.08000 * 120.05561 * 180.22937 * 14 13 12 41 41 H 0.96993 * 120.00095 * 180.02562 * 19 18 16 42 42 H 1.07991 * 120.05527 * 179.97438 * 24 15 14 43 43 H 1.07994 * 119.94717 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1268 1.4435 -0.0830 5 6 1.4372 2.1965 -1.1870 6 6 1.9804 1.6113 -2.4921 7 8 1.5120 2.3901 -3.5948 8 6 1.6273 2.1294 1.3033 9 7 2.2999 1.4805 2.4315 10 6 2.0855 1.9203 3.6873 11 8 1.3342 2.8559 3.8839 12 6 2.7629 1.2661 4.8243 13 6 3.6231 0.1852 4.5961 14 6 4.2545 -0.4189 5.6423 15 6 4.0320 0.0390 6.9559 16 6 4.6787 -0.5869 8.0427 17 1 4.8176 -0.0508 8.9700 18 6 5.1411 -1.9049 7.9189 19 7 4.5390 -2.7351 7.1094 20 14 6.6181 -2.4737 8.9111 21 1 6.1528 -3.1292 10.1597 22 1 7.4101 -3.4410 8.1096 23 1 7.4654 -1.3030 9.2528 24 6 3.1615 1.1236 7.1811 25 6 2.5382 1.7245 6.1281 26 1 -0.3633 0.5203 -0.8862 27 1 -0.3634 0.5073 0.8937 28 1 -0.3634 -1.0276 -0.0075 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 0.3519 2.0963 -1.1679 32 1 1.7059 3.2508 -1.1220 33 1 3.0701 1.6284 -2.4721 34 1 1.6352 0.5832 -2.6008 35 1 1.8185 2.0761 -4.4565 36 1 1.9125 3.1807 1.2661 37 1 0.5475 2.0502 1.4296 38 1 2.8995 0.7344 2.2747 39 1 3.7899 -0.1677 3.5891 40 1 4.9208 -1.2503 5.4649 41 1 4.8587 -3.6468 7.0240 42 1 2.9875 1.4778 8.1864 43 1 1.8704 2.5557 6.2998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270360860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:25 Heat of formation + Delta-G solvation = -116.850374 kcal Electronic energy + Delta-G solvation = -22580.415662 eV Core-core repulsion = 19202.192689 eV Total energy + Delta-G solvation = -3378.222973 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.88487 -39.32523 -38.63238 -37.16741 -35.70316 -34.71089 -32.08671 -31.33106 -31.26362 -29.09049 -27.41129 -25.33992 -24.18461 -23.18201 -22.73672 -21.22641 -20.21103 -19.37082 -18.64409 -17.95647 -17.27756 -17.09724 -16.78682 -16.28769 -15.77363 -15.64635 -15.20647 -15.11917 -14.83898 -14.71483 -14.38913 -13.97166 -13.74963 -13.58054 -13.43685 -13.23053 -13.04459 -12.88380 -12.66053 -12.62688 -12.33408 -12.28536 -11.83838 -11.63233 -11.54952 -11.40547 -11.34200 -11.02700 -10.77660 -10.69079 -10.03029 -9.57556 -9.46288 -8.89755 -6.45634 0.46834 1.15073 1.36375 1.42381 1.55538 2.10818 2.17644 2.39153 2.74200 3.36061 3.67884 3.74976 3.81276 4.06525 4.25277 4.27728 4.31311 4.42524 4.43857 4.47510 4.54192 4.63932 4.68236 4.75537 4.87301 4.90935 4.98075 5.02598 5.09175 5.13971 5.20147 5.28731 5.29817 5.33373 5.51552 5.56562 5.61860 5.82283 5.92195 5.99378 6.21623 6.51261 6.73126 6.75054 6.89171 6.93696 7.46933 8.07887 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024035 B = 0.002955 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.707006 B = 9473.803765 C =10135.709490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.122 4.122 3 C -0.084 4.084 4 H 0.091 0.909 5 C -0.115 4.115 6 C 0.078 3.922 7 O -0.599 6.599 8 C 0.125 3.875 9 N -0.721 5.721 10 C 0.570 3.430 11 O -0.610 6.610 12 C -0.302 4.302 13 C -0.046 4.046 14 C -0.207 4.207 15 C 0.103 3.897 16 C -0.476 4.476 17 H 0.086 0.914 18 C 0.048 3.952 19 N -0.782 5.782 20 Si 0.980 3.020 21 H -0.259 1.259 22 H -0.259 1.259 23 H -0.258 1.258 24 C -0.259 4.259 25 C -0.030 4.030 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.397 0.603 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.407 0.593 39 H 0.124 0.876 40 H 0.106 0.894 41 H 0.301 0.699 42 H 0.102 0.898 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -1.362 -16.589 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.159 4.159 3 C -0.103 4.103 4 H 0.110 0.890 5 C -0.153 4.153 6 C 0.000 4.000 7 O -0.407 6.407 8 C 0.002 3.998 9 N -0.373 5.373 10 C 0.363 3.637 11 O -0.495 6.495 12 C -0.306 4.306 13 C -0.065 4.065 14 C -0.226 4.226 15 C 0.100 3.900 16 C -0.502 4.502 17 H 0.104 0.896 18 C -0.175 4.175 19 N -0.404 5.404 20 Si 0.800 3.200 21 H -0.184 1.184 22 H -0.183 1.183 23 H -0.181 1.181 24 C -0.278 4.278 25 C -0.049 4.049 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.247 0.753 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.244 0.756 39 H 0.142 0.858 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.249 -0.638 -16.118 16.133 hybrid contribution 0.753 -0.763 0.297 1.112 sum 0.503 -1.401 -15.821 15.891 Atomic orbital electron populations 1.21899 0.96095 1.01894 1.01648 1.21612 0.96259 0.95145 1.02874 1.21242 1.01538 0.95526 0.91952 0.89043 1.21493 1.01604 0.99816 0.92399 1.22209 0.97943 0.94214 0.85591 1.86422 1.77256 1.58399 1.18651 1.21393 0.97022 0.96293 0.85127 1.45725 1.49169 1.37155 1.05264 1.18420 0.79842 0.81821 0.83592 1.90609 1.40966 1.31859 1.86101 1.19131 1.12562 1.06153 0.92767 1.20664 0.94250 0.93345 0.98276 1.20813 1.05746 1.03732 0.92338 1.18067 0.87758 0.90366 0.93784 1.20078 1.31905 0.98149 1.00066 0.89579 1.26918 0.98867 0.95801 0.95866 1.69802 1.34476 1.06259 1.29845 0.85220 0.77237 0.78922 0.78664 1.18389 1.18315 1.18149 1.20804 1.05285 1.04235 0.97486 1.20503 0.95773 0.96390 0.92264 0.91430 0.94256 0.92272 0.92298 0.89490 0.90888 0.91924 0.92568 0.92039 0.75284 0.92950 0.92535 0.75550 0.85797 0.87608 0.88811 0.87994 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.21 71.98 0.66 -2.28 16 2 C -0.12 -2.07 5.31 30.59 0.16 -1.91 16 3 C -0.08 -1.54 2.18 -10.80 -0.02 -1.56 16 4 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 5 C -0.12 -2.01 4.76 30.60 0.15 -1.86 16 6 C 0.08 1.06 6.71 71.98 0.48 1.55 16 7 O -0.60 -9.38 13.66 -148.98 -2.04 -11.42 16 8 C 0.13 3.38 4.92 86.38 0.43 3.80 16 9 N -0.72 -23.08 5.19 -466.17 -2.42 -25.49 16 10 C 0.57 24.38 7.76 86.73 0.67 25.05 16 11 O -0.61 -29.98 16.32 -3.97 -0.06 -30.04 16 12 C -0.30 -13.91 5.89 -19.93 -0.12 -14.02 16 13 C -0.05 -2.02 9.47 22.25 0.21 -1.80 16 14 C -0.21 -10.10 8.70 22.47 0.20 -9.90 16 15 C 0.10 5.37 5.57 -21.28 -0.12 5.25 16 16 C -0.48 -23.89 8.97 23.46 0.21 -23.68 16 17 H 0.09 4.17 7.99 -2.91 -0.02 4.15 16 18 C 0.05 2.17 4.87 85.35 0.42 2.59 16 19 N -0.78 -36.60 11.57 21.87 0.25 -36.35 16 20 Si 0.98 33.88 29.65 68.60 2.03 35.91 16 21 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 22 H -0.26 -8.38 7.11 99.48 0.71 -7.67 16 23 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 24 C -0.26 -13.02 9.73 22.47 0.22 -12.80 16 25 C -0.03 -1.47 9.52 22.26 0.21 -1.26 16 26 H 0.07 1.11 6.18 -2.39 -0.01 1.10 16 27 H 0.04 0.90 6.47 -2.38 -0.02 0.88 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.14 7.08 -2.39 -0.02 1.12 16 30 H 0.09 1.10 6.96 -2.38 -0.02 1.09 16 31 H 0.07 1.35 5.97 -2.39 -0.01 1.33 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.68 6.97 -2.39 -0.02 0.66 16 35 H 0.40 2.44 9.12 -74.06 -0.68 1.76 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 1.67 6.34 -2.38 -0.02 1.65 16 38 H 0.41 11.13 5.65 -92.71 -0.52 10.61 16 39 H 0.12 4.31 6.37 -2.91 -0.02 4.29 16 40 H 0.11 5.15 6.44 -2.91 -0.02 5.13 16 41 H 0.30 12.33 8.29 -92.71 -0.77 11.56 16 42 H 0.10 4.84 8.06 -2.92 -0.02 4.82 16 43 H 0.10 4.78 7.63 -2.91 -0.02 4.76 16 Total: -1.00 -64.72 347.52 1.36 -63.35 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -0.16 Total: 36.88 kcal Atomic # 6 Polarization: -36.60 SS G_CDS: 3.76 Total: -32.84 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -2.16 Total: -61.84 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -2.10 Total: -41.46 kcal Atomic # 14 Polarization: 33.88 SS G_CDS: 2.03 Total: 35.91 kcal Total: -64.72 1.36 -63.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270360860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.499 kcal (2) G-P(sol) polarization free energy of solvation -64.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds