Wall clock time and date at job start Tue Mar 31 2020 07:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 H 1.09004 * 109.47110 * 54.99852 * 3 2 1 5 5 C 1.53003 * 109.47026 * 294.99987 * 3 2 1 6 6 C 1.52994 * 109.46882 * 174.99842 * 3 2 1 7 7 H 1.08995 * 109.47759 * 304.99918 * 6 3 2 8 8 O 1.42903 * 109.47308 * 65.00363 * 6 3 2 9 9 C 1.53001 * 109.47176 * 185.00065 * 6 3 2 10 10 N 1.46498 * 109.47362 * 180.02562 * 9 6 3 11 11 C 1.34783 * 119.99819 * 180.02562 * 10 9 6 12 12 O 1.21586 * 120.00186 * 359.97438 * 11 10 9 13 13 C 1.47642 * 119.99765 * 179.71985 * 11 10 9 14 14 C 1.40015 * 119.89395 * 0.02562 * 13 11 10 15 15 C 1.36321 * 120.10544 * 179.71765 * 14 13 11 16 16 C 1.40895 * 119.88932 * 0.55022 * 15 14 13 17 17 C 1.41108 * 120.10152 * 179.69677 * 16 15 14 18 18 H 1.07992 * 119.99872 * 204.66399 * 17 16 15 19 19 C 1.40225 * 120.00051 * 24.66454 * 17 16 15 20 20 N 1.30654 * 119.99982 * 17.86632 * 19 17 16 21 21 Si 1.86795 * 120.00136 * 197.86918 * 19 17 16 22 22 H 1.48493 * 109.47526 * 59.99350 * 21 19 17 23 23 H 1.48496 * 109.47534 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46856 * 299.99762 * 21 19 17 25 25 C 1.40889 * 119.79304 * 359.72558 * 16 15 14 26 26 C 1.36323 * 119.89189 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.47270 * 300.00535 * 1 2 3 28 28 H 1.08998 * 109.47031 * 59.99715 * 1 2 3 29 29 H 1.09001 * 109.47539 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47132 * 239.99892 * 2 1 3 31 31 H 1.09006 * 109.46746 * 120.00090 * 2 1 3 32 32 H 1.08998 * 109.46531 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.46754 * 300.00030 * 5 3 2 34 34 H 1.08994 * 109.47023 * 59.99935 * 5 3 2 35 35 H 0.96701 * 114.00077 * 59.99277 * 8 6 3 36 36 H 1.08996 * 109.47343 * 59.99635 * 9 6 3 37 37 H 1.09008 * 109.46877 * 300.00534 * 9 6 3 38 38 H 0.96998 * 119.99837 * 359.97438 * 10 9 6 39 39 H 1.07996 * 119.94843 * 359.97438 * 14 13 11 40 40 H 1.07994 * 120.05729 * 180.27717 * 15 14 13 41 41 H 0.97000 * 119.99535 * 180.02562 * 20 19 17 42 42 H 1.07996 * 120.04925 * 179.97438 * 25 16 15 43 43 H 1.07994 * 119.94393 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4442 0.1258 7 1 3.8571 0.8800 1.0113 8 8 4.1393 0.8402 -1.0350 9 6 4.0646 2.8849 0.2512 10 7 5.5247 2.8866 0.3710 11 6 6.1893 4.0527 0.4944 12 8 5.5772 5.1031 0.5058 13 6 7.6603 4.0540 0.6213 14 6 8.3626 2.8428 0.6128 15 6 9.7212 2.8394 0.7239 16 6 10.4177 4.0566 0.8592 17 6 11.8235 4.0579 0.9811 18 1 12.3226 4.8828 1.4676 19 6 12.5725 2.9881 0.4704 20 7 12.0409 2.1781 -0.4062 21 14 14.3302 2.7209 1.0434 22 1 14.3441 2.4999 2.5117 23 1 14.8991 1.5327 0.3581 24 1 15.1451 3.9182 0.7153 25 6 9.7061 5.2725 0.8731 26 6 8.3480 5.2662 0.7552 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.9983 3.1543 -1.3071 33 1 2.0699 1.5875 -2.1491 34 1 0.5491 2.1252 -1.3969 35 1 3.9206 1.2910 -1.8620 36 1 3.6265 3.3457 1.1365 37 1 3.7723 3.4492 -0.6344 38 1 6.0130 2.0485 0.3623 39 1 7.8274 1.9100 0.5138 40 1 10.2625 1.9049 0.7127 41 1 12.5589 1.4378 -0.7591 42 1 10.2357 6.2079 0.9771 43 1 7.8016 6.1977 0.7662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270424563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:02 Heat of formation + Delta-G solvation = -98.705325 kcal Electronic energy + Delta-G solvation = -22603.235447 eV Core-core repulsion = 19225.799302 eV Total energy + Delta-G solvation = -3377.436145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.52240 -38.48213 -37.01521 -34.94412 -33.85459 -33.80369 -30.77450 -29.98650 -29.42188 -28.00073 -26.10596 -25.03461 -22.39017 -21.57653 -20.84824 -20.29531 -19.41260 -17.52240 -17.24070 -16.58163 -16.02478 -15.57948 -15.28213 -14.90883 -14.43070 -14.12400 -13.95574 -13.92350 -13.50466 -13.17133 -12.79831 -12.70448 -12.37194 -12.23247 -12.08115 -11.91957 -11.88384 -11.66927 -11.33933 -11.27070 -11.24975 -10.97904 -10.89524 -10.67238 -10.62532 -10.05439 -10.00190 -9.53956 -9.32870 -8.94583 -8.57423 -7.70023 -7.52593 -7.01998 -4.58825 2.25499 2.93344 2.95193 2.99352 3.05594 3.69566 3.74784 3.88645 4.33229 4.47531 4.58811 4.60444 4.64817 4.98264 5.03615 5.19892 5.24879 5.30802 5.46394 5.59067 5.66424 5.68568 5.73179 5.79893 5.82427 5.88234 6.08514 6.12670 6.14219 6.17569 6.33545 6.78674 6.84204 6.94922 7.07594 7.15444 7.45274 7.50523 7.67482 7.81562 7.87621 8.08733 8.27887 8.41512 8.64520 8.77104 9.09787 9.89991 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027738 B = 0.002882 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.192168 B = 9714.006537 C =10471.659067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.121 4.121 4 H 0.080 0.920 5 C -0.159 4.159 6 C 0.099 3.901 7 H 0.104 0.896 8 O -0.555 6.555 9 C 0.091 3.909 10 N -0.737 5.737 11 C 0.571 3.429 12 O -0.579 6.579 13 C -0.284 4.284 14 C -0.062 4.062 15 C -0.179 4.179 16 C 0.129 3.871 17 C -0.443 4.443 18 H 0.084 0.916 19 C 0.074 3.926 20 N -0.771 5.771 21 Si 0.914 3.086 22 H -0.260 1.260 23 H -0.276 1.276 24 H -0.262 1.262 25 C -0.240 4.240 26 C -0.022 4.022 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.374 0.626 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.401 0.599 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.287 0.713 42 H 0.098 0.902 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.243 -6.291 -0.606 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.140 4.140 4 H 0.099 0.901 5 C -0.216 4.216 6 C 0.040 3.960 7 H 0.121 0.879 8 O -0.361 6.361 9 C -0.034 4.034 10 N -0.390 5.390 11 C 0.365 3.635 12 O -0.462 6.462 13 C -0.289 4.289 14 C -0.081 4.081 15 C -0.198 4.198 16 C 0.125 3.875 17 C -0.471 4.471 18 H 0.102 0.898 19 C -0.147 4.147 20 N -0.394 5.394 21 Si 0.738 3.262 22 H -0.185 1.185 23 H -0.201 1.201 24 H -0.187 1.187 25 C -0.259 4.259 26 C -0.042 4.042 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.222 0.778 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.237 0.763 39 H 0.108 0.892 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.396 -6.178 -0.326 15.669 hybrid contribution 0.723 -0.191 -0.253 0.790 sum -13.673 -6.369 -0.579 15.095 Atomic orbital electron populations 1.21838 0.96024 1.01478 1.01797 1.21488 0.95464 0.95645 1.02614 1.21778 0.95471 0.97279 0.99451 0.90124 1.21976 1.02021 1.00715 0.96908 1.22229 0.91549 0.92691 0.89564 0.87852 1.86583 1.75841 1.56949 1.16729 1.21932 0.82507 0.96671 1.02277 1.45800 1.06109 1.09811 1.77301 1.18612 0.88220 0.82367 0.74253 1.90623 1.70312 1.31738 1.53502 1.18892 0.90097 0.94714 1.25185 1.20496 0.94839 0.94720 0.98020 1.20980 0.92366 0.98649 1.07786 1.17788 0.93232 0.91004 0.85452 1.19811 0.91799 1.04288 1.31171 0.89760 1.26104 1.01493 0.94424 0.92706 1.69743 1.38911 1.12280 1.18506 0.86258 0.80807 0.78875 0.80306 1.18483 1.20056 1.18677 1.20713 0.93415 0.97070 1.14720 1.20358 0.93853 0.95699 0.94250 0.92877 0.92556 0.92890 0.91324 0.91996 0.91984 0.92319 0.91918 0.77764 0.91434 0.91679 0.76258 0.89228 0.86190 0.90168 0.88406 0.88164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 37.16 0.36 -0.70 16 2 C -0.11 -0.91 5.24 -26.73 -0.14 -1.05 16 3 C -0.12 -1.01 2.22 -90.62 -0.20 -1.21 16 4 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.16 -1.23 8.28 37.16 0.31 -0.93 16 6 C 0.10 1.04 2.80 -26.73 -0.07 0.97 16 7 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 8 O -0.55 -6.27 12.61 -35.23 -0.44 -6.71 16 9 C 0.09 1.23 5.09 -4.04 -0.02 1.21 16 10 N -0.74 -12.53 5.40 -61.31 -0.33 -12.86 16 11 C 0.57 12.35 7.76 -12.42 -0.10 12.25 16 12 O -0.58 -13.95 16.32 5.29 0.09 -13.86 16 13 C -0.28 -6.62 5.89 -104.73 -0.62 -7.24 16 14 C -0.06 -1.39 9.47 -39.61 -0.38 -1.77 16 15 C -0.18 -4.44 8.64 -39.27 -0.34 -4.78 16 16 C 0.13 3.31 5.58 -106.80 -0.60 2.71 16 17 C -0.44 -11.10 9.04 -37.75 -0.34 -11.44 16 18 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 19 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 20 N -0.77 -18.64 10.95 55.56 0.61 -18.03 16 21 Si 0.91 17.38 29.60 -169.99 -5.03 12.35 16 22 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 25 C -0.24 -5.88 9.73 -39.27 -0.38 -6.26 16 26 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.59 7.96 -51.93 -0.41 0.18 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 33 H 0.06 0.42 6.72 -51.93 -0.35 0.07 16 34 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 35 H 0.37 3.42 7.19 45.56 0.33 3.75 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.90 6.57 -51.92 -0.34 0.56 16 38 H 0.40 6.44 6.35 -40.82 -0.26 6.18 16 39 H 0.09 1.76 6.37 -52.49 -0.33 1.42 16 40 H 0.12 3.02 6.15 -52.49 -0.32 2.69 16 41 H 0.29 6.26 8.29 -40.82 -0.34 5.92 16 42 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -28.91 348.02 -8.47 -37.38 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -5.62 Total: 14.00 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -2.98 Total: -17.50 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.28 Total: -30.89 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.36 Total: -20.58 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.91 -8.47 -37.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270424563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.323 kcal (2) G-P(sol) polarization free energy of solvation -28.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds