Wall clock time and date at job start Tue Mar 31 2020 07:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 H 1.09004 * 109.47110 * 54.99852 * 3 2 1 5 5 C 1.53003 * 109.47026 * 294.99987 * 3 2 1 6 6 C 1.52994 * 109.46882 * 174.99842 * 3 2 1 7 7 H 1.08995 * 109.47759 * 304.99918 * 6 3 2 8 8 O 1.42903 * 109.47308 * 65.00363 * 6 3 2 9 9 C 1.53001 * 109.47176 * 185.00065 * 6 3 2 10 10 N 1.46498 * 109.47362 * 180.02562 * 9 6 3 11 11 C 1.34783 * 119.99819 * 180.02562 * 10 9 6 12 12 O 1.21586 * 120.00186 * 359.97438 * 11 10 9 13 13 C 1.47642 * 119.99765 * 179.71985 * 11 10 9 14 14 C 1.40015 * 119.89395 * 0.02562 * 13 11 10 15 15 C 1.36321 * 120.10544 * 179.71765 * 14 13 11 16 16 C 1.40895 * 119.88932 * 0.55022 * 15 14 13 17 17 C 1.41108 * 120.10152 * 179.69677 * 16 15 14 18 18 H 1.07992 * 119.99872 * 204.66399 * 17 16 15 19 19 C 1.40225 * 120.00051 * 24.66454 * 17 16 15 20 20 N 1.30654 * 119.99982 * 17.86632 * 19 17 16 21 21 Si 1.86795 * 120.00136 * 197.86918 * 19 17 16 22 22 H 1.48493 * 109.47526 * 59.99350 * 21 19 17 23 23 H 1.48496 * 109.47534 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46856 * 299.99762 * 21 19 17 25 25 C 1.40889 * 119.79304 * 359.72558 * 16 15 14 26 26 C 1.36323 * 119.89189 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.47270 * 300.00535 * 1 2 3 28 28 H 1.08998 * 109.47031 * 59.99715 * 1 2 3 29 29 H 1.09001 * 109.47539 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47132 * 239.99892 * 2 1 3 31 31 H 1.09006 * 109.46746 * 120.00090 * 2 1 3 32 32 H 1.08998 * 109.46531 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.46754 * 300.00030 * 5 3 2 34 34 H 1.08994 * 109.47023 * 59.99935 * 5 3 2 35 35 H 0.96701 * 114.00077 * 59.99277 * 8 6 3 36 36 H 1.08996 * 109.47343 * 59.99635 * 9 6 3 37 37 H 1.09008 * 109.46877 * 300.00534 * 9 6 3 38 38 H 0.96998 * 119.99837 * 359.97438 * 10 9 6 39 39 H 1.07996 * 119.94843 * 359.97438 * 14 13 11 40 40 H 1.07994 * 120.05729 * 180.27717 * 15 14 13 41 41 H 0.97000 * 119.99535 * 180.02562 * 20 19 17 42 42 H 1.07996 * 120.04925 * 179.97438 * 25 16 15 43 43 H 1.07994 * 119.94393 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4442 0.1258 7 1 3.8571 0.8800 1.0113 8 8 4.1393 0.8402 -1.0350 9 6 4.0646 2.8849 0.2512 10 7 5.5247 2.8866 0.3710 11 6 6.1893 4.0527 0.4944 12 8 5.5772 5.1031 0.5058 13 6 7.6603 4.0540 0.6213 14 6 8.3626 2.8428 0.6128 15 6 9.7212 2.8394 0.7239 16 6 10.4177 4.0566 0.8592 17 6 11.8235 4.0579 0.9811 18 1 12.3226 4.8828 1.4676 19 6 12.5725 2.9881 0.4704 20 7 12.0409 2.1781 -0.4062 21 14 14.3302 2.7209 1.0434 22 1 14.3441 2.4999 2.5117 23 1 14.8991 1.5327 0.3581 24 1 15.1451 3.9182 0.7153 25 6 9.7061 5.2725 0.8731 26 6 8.3480 5.2662 0.7552 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.9983 3.1543 -1.3071 33 1 2.0699 1.5875 -2.1491 34 1 0.5491 2.1252 -1.3969 35 1 3.9206 1.2910 -1.8620 36 1 3.6265 3.3457 1.1365 37 1 3.7723 3.4492 -0.6344 38 1 6.0130 2.0485 0.3623 39 1 7.8274 1.9100 0.5138 40 1 10.2625 1.9049 0.7127 41 1 12.5589 1.4378 -0.7591 42 1 10.2357 6.2079 0.9771 43 1 7.8016 6.1977 0.7662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270424563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:01 Heat of formation + Delta-G solvation = -116.581626 kcal Electronic energy + Delta-G solvation = -22604.010622 eV Core-core repulsion = 19225.799302 eV Total energy + Delta-G solvation = -3378.211319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92432 -39.70760 -38.76746 -35.78528 -35.66837 -35.16074 -32.26458 -31.31763 -31.07339 -29.04662 -27.59925 -26.09049 -23.77211 -22.96742 -22.55163 -21.43559 -20.66466 -19.36896 -18.66085 -17.70745 -17.24754 -16.98753 -16.59510 -16.02298 -15.75991 -15.47636 -15.37556 -15.10115 -14.90780 -14.57075 -14.33710 -13.87771 -13.74946 -13.60320 -13.28923 -13.15386 -12.92499 -12.85026 -12.64600 -12.54714 -12.38615 -12.34860 -12.05124 -11.79107 -11.52467 -11.39679 -11.35590 -11.12689 -10.97856 -10.58520 -10.06718 -9.57790 -9.40770 -8.79333 -6.48445 0.44033 1.14622 1.39003 1.44711 1.52557 2.11849 2.18029 2.35602 2.78543 3.45971 3.61419 3.69139 3.85952 3.94795 4.14509 4.24873 4.31664 4.32865 4.44267 4.53349 4.60595 4.65875 4.71158 4.84950 4.92223 4.99412 5.02846 5.07720 5.15642 5.16226 5.17765 5.23906 5.29746 5.49730 5.51384 5.57092 5.60426 5.82056 5.94307 5.99245 6.22271 6.53613 6.67913 6.74699 6.76843 6.88711 7.43412 8.15749 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027738 B = 0.002882 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.192168 B = 9714.006537 C =10471.659067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.114 4.114 4 H 0.085 0.915 5 C -0.159 4.159 6 C 0.110 3.890 7 H 0.106 0.894 8 O -0.566 6.566 9 C 0.088 3.912 10 N -0.720 5.720 11 C 0.570 3.430 12 O -0.607 6.607 13 C -0.295 4.295 14 C -0.053 4.053 15 C -0.199 4.199 16 C 0.101 3.899 17 C -0.473 4.473 18 H 0.086 0.914 19 C 0.037 3.963 20 N -0.798 5.798 21 Si 0.988 3.012 22 H -0.258 1.258 23 H -0.264 1.264 24 H -0.258 1.258 25 C -0.253 4.253 26 C -0.033 4.033 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.383 0.617 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.408 0.592 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.297 0.703 42 H 0.105 0.895 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.697 -7.651 -0.654 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.133 4.133 4 H 0.103 0.897 5 C -0.216 4.216 6 C 0.050 3.950 7 H 0.124 0.876 8 O -0.373 6.373 9 C -0.035 4.035 10 N -0.372 5.372 11 C 0.363 3.637 12 O -0.492 6.492 13 C -0.299 4.299 14 C -0.072 4.072 15 C -0.218 4.218 16 C 0.098 3.902 17 C -0.500 4.500 18 H 0.104 0.896 19 C -0.182 4.182 20 N -0.421 5.421 21 Si 0.808 3.192 22 H -0.182 1.182 23 H -0.188 1.188 24 H -0.182 1.182 25 C -0.273 4.273 26 C -0.052 4.052 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.233 0.767 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.245 0.755 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.887 -7.566 -0.390 16.704 hybrid contribution 0.767 0.223 -0.281 0.846 sum -14.120 -7.343 -0.671 15.930 Atomic orbital electron populations 1.21824 0.95092 1.01921 1.02132 1.21452 0.96237 0.94974 1.02266 1.21724 0.93663 0.97893 1.00040 0.89685 1.21975 1.02753 1.00102 0.96733 1.22168 0.92855 0.90383 0.89559 0.87636 1.86566 1.76189 1.57214 1.17361 1.22184 0.80064 0.99041 1.02242 1.45683 1.07709 1.08573 1.75262 1.18412 0.87648 0.83199 0.74414 1.90605 1.70609 1.32996 1.55033 1.19187 0.91461 0.94650 1.24617 1.20713 0.94243 0.95817 0.96434 1.21016 0.93270 0.98150 1.09355 1.18144 0.94141 0.91695 0.86249 1.20094 0.92017 1.05629 1.32265 0.89568 1.26953 1.05675 0.93466 0.92127 1.69767 1.40832 1.12667 1.18851 0.85144 0.75190 0.79130 0.79728 1.18211 1.18787 1.18230 1.20861 0.93823 0.97272 1.15331 1.20513 0.93854 0.96414 0.94441 0.92621 0.92145 0.92449 0.91860 0.92182 0.92871 0.91726 0.90898 0.76704 0.91520 0.91664 0.75517 0.86199 0.86854 0.89152 0.87700 0.87886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.67 71.98 0.70 -1.08 16 2 C -0.11 -1.55 5.24 30.60 0.16 -1.39 16 3 C -0.11 -1.68 2.22 -10.79 -0.02 -1.71 16 4 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 5 C -0.16 -2.15 8.28 71.98 0.60 -1.55 16 6 C 0.11 2.10 2.80 30.59 0.09 2.18 16 7 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 8 O -0.57 -11.66 12.61 -148.98 -1.88 -13.54 16 9 C 0.09 2.27 5.09 86.38 0.44 2.71 16 10 N -0.72 -23.57 5.40 -466.15 -2.52 -26.08 16 11 C 0.57 24.36 7.76 86.73 0.67 25.03 16 12 O -0.61 -29.17 16.32 -3.99 -0.07 -29.23 16 13 C -0.29 -13.73 5.89 -19.93 -0.12 -13.85 16 14 C -0.05 -2.39 9.47 22.25 0.21 -2.18 16 15 C -0.20 -9.99 8.64 22.47 0.19 -9.80 16 16 C 0.10 5.31 5.58 -21.28 -0.12 5.19 16 17 C -0.47 -24.06 9.04 23.46 0.21 -23.84 16 18 H 0.09 4.18 7.91 -2.91 -0.02 4.16 16 19 C 0.04 1.73 5.14 85.35 0.44 2.16 16 20 N -0.80 -38.49 10.95 21.87 0.24 -38.25 16 21 Si 0.99 34.94 29.60 68.60 2.03 36.97 16 22 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 23 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 24 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 25 C -0.25 -12.75 9.73 22.47 0.22 -12.53 16 26 C -0.03 -1.61 9.52 22.25 0.21 -1.40 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.65 6.56 -2.39 -0.02 0.64 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.96 7.96 -2.39 -0.02 0.94 16 31 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.05 0.82 6.57 -2.39 -0.02 0.81 16 33 H 0.06 0.80 6.72 -2.39 -0.02 0.78 16 34 H 0.07 0.85 6.56 -2.39 -0.02 0.84 16 35 H 0.38 6.27 7.19 -74.06 -0.53 5.74 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.72 6.57 -2.38 -0.02 1.70 16 38 H 0.41 12.34 6.35 -92.71 -0.59 11.76 16 39 H 0.12 4.52 6.37 -2.91 -0.02 4.50 16 40 H 0.11 5.77 6.15 -2.91 -0.02 5.76 16 41 H 0.30 12.77 8.29 -92.71 -0.77 12.00 16 42 H 0.10 4.94 8.06 -2.91 -0.02 4.91 16 43 H 0.10 4.87 7.63 -2.91 -0.02 4.85 16 Total: -1.00 -61.90 348.02 1.60 -60.30 By element: Atomic # 1 Polarization: 41.96 SS G_CDS: -0.09 Total: 41.88 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 3.88 Total: -32.03 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -2.28 Total: -64.34 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -1.94 Total: -42.77 kcal Atomic # 14 Polarization: 34.94 SS G_CDS: 2.03 Total: 36.97 kcal Total: -61.90 1.60 -60.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270424563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.286 kcal (2) G-P(sol) polarization free energy of solvation -61.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds