Wall clock time and date at job start Tue Mar 31 2020 07:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 H 1.09004 * 109.46920 * 54.99917 * 3 2 1 5 5 C 1.52998 * 109.47271 * 295.00360 * 3 2 1 6 6 C 1.52995 * 109.47246 * 175.00236 * 3 2 1 7 7 H 1.08994 * 109.47379 * 59.99924 * 6 3 2 8 8 O 1.42904 * 109.47276 * 300.00022 * 6 3 2 9 9 C 1.53001 * 109.47058 * 180.02562 * 6 3 2 10 10 N 1.46501 * 109.46967 * 184.99943 * 9 6 3 11 11 C 1.34780 * 120.00331 * 179.97438 * 10 9 6 12 12 O 1.21589 * 119.99684 * 0.02562 * 11 10 9 13 13 C 1.47640 * 120.00259 * 180.02562 * 11 10 9 14 14 C 1.40008 * 119.89740 * 359.72922 * 13 11 10 15 15 C 1.36314 * 120.10976 * 179.71888 * 14 13 11 16 16 C 1.40894 * 119.88896 * 0.57326 * 15 14 13 17 17 C 1.41108 * 120.10487 * 179.67526 * 16 15 14 18 18 H 1.07992 * 120.00237 * 204.65740 * 17 16 15 19 19 C 1.40228 * 119.99585 * 24.65349 * 17 16 15 20 20 N 1.30639 * 120.00168 * 17.86648 * 19 17 16 21 21 Si 1.86807 * 119.99566 * 197.86351 * 19 17 16 22 22 H 1.48491 * 109.47039 * 60.00319 * 21 19 17 23 23 H 1.48507 * 109.46849 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47123 * 299.99808 * 21 19 17 25 25 C 1.40891 * 119.79000 * 359.69972 * 16 15 14 26 26 C 1.36312 * 119.89223 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.46897 * 300.00053 * 1 2 3 28 28 H 1.08998 * 109.47314 * 59.99523 * 1 2 3 29 29 H 1.09002 * 109.47426 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46730 * 240.00475 * 2 1 3 31 31 H 1.08998 * 109.47314 * 120.00477 * 2 1 3 32 32 H 1.09003 * 109.47303 * 299.99543 * 5 3 2 33 33 H 1.08998 * 109.47131 * 59.99778 * 5 3 2 34 34 H 1.09004 * 109.47181 * 179.97438 * 5 3 2 35 35 H 0.96703 * 114.00152 * 300.00197 * 8 6 3 36 36 H 1.09001 * 109.47022 * 304.99496 * 9 6 3 37 37 H 1.08993 * 109.47294 * 65.00272 * 9 6 3 38 38 H 0.97005 * 120.00308 * 0.02562 * 10 9 6 39 39 H 1.07998 * 119.94458 * 359.97438 * 14 13 11 40 40 H 1.07997 * 120.05616 * 180.24983 * 15 14 13 41 41 H 0.97002 * 120.00335 * 179.97438 * 20 19 17 42 42 H 1.07999 * 120.04837 * 179.97438 * 25 16 15 43 43 H 1.08005 * 119.94138 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 1 3.9994 0.9053 -0.7161 8 8 3.9429 0.8054 1.3467 9 6 4.0747 2.8868 0.1263 10 7 5.5398 2.8868 0.1263 11 6 6.2137 4.0541 0.1262 12 8 5.6057 5.1070 0.1267 13 6 7.6901 4.0541 0.1256 14 6 8.3880 2.8403 0.1308 15 6 9.7511 2.8352 0.1245 16 6 10.4578 4.0542 0.1249 17 6 11.8688 4.0542 0.1253 18 1 12.4087 4.9041 0.5158 19 6 12.5701 2.9506 -0.3814 20 7 11.9643 2.0921 -1.1577 21 14 14.3705 2.7081 0.0539 22 1 14.5104 2.5769 1.5263 23 1 14.8772 1.4767 -0.6037 24 1 15.1552 3.8781 -0.4157 25 6 9.7510 5.2730 0.1255 26 6 8.3879 5.2679 0.1251 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.0698 1.5876 -2.1492 33 1 0.5489 2.1253 -1.3968 34 1 1.9982 3.1544 -1.3071 35 1 3.5908 1.2325 2.1396 36 1 3.7114 3.4010 -0.7635 37 1 3.7115 3.4002 1.0165 38 1 6.0248 2.0468 0.1255 39 1 7.8454 1.9065 0.1356 40 1 10.2885 1.8985 0.1244 41 1 12.4495 1.3289 -1.5085 42 1 10.2885 6.2097 0.1263 43 1 7.8453 6.2017 0.1260 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270424567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:07 Heat of formation + Delta-G solvation = -99.279471 kcal Electronic energy + Delta-G solvation = -22562.928295 eV Core-core repulsion = 19185.467253 eV Total energy + Delta-G solvation = -3377.461042 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.46017 -38.40310 -37.00961 -35.15377 -33.86956 -33.84597 -30.94346 -30.03723 -29.42426 -27.59143 -25.94459 -25.03409 -22.40152 -21.62177 -20.85497 -20.59565 -19.45548 -17.52382 -17.22269 -16.57285 -15.95101 -15.51498 -15.15935 -14.91184 -14.36890 -14.04488 -13.96647 -13.93207 -13.52095 -13.16276 -13.04253 -12.70963 -12.45724 -12.09502 -11.97980 -11.94024 -11.87357 -11.72088 -11.37005 -11.30495 -11.25270 -10.98025 -10.86874 -10.63951 -10.63254 -10.05667 -10.00292 -9.54225 -9.33196 -8.94720 -8.57396 -7.70335 -7.52847 -7.02349 -4.59077 2.25245 2.93199 2.95013 2.99266 3.05409 3.70169 3.74616 3.88375 4.26076 4.44698 4.58422 4.62982 4.71049 4.99707 5.05972 5.23502 5.27550 5.31201 5.44635 5.58623 5.64082 5.70870 5.75102 5.82394 5.84763 5.91306 6.07943 6.12699 6.16156 6.18510 6.33269 6.78389 6.83880 6.94575 7.07368 7.15171 7.45008 7.49263 7.67147 7.81244 7.87378 8.08476 8.27083 8.41241 8.64269 8.76858 9.09407 9.89660 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027080 B = 0.002877 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.711259 B = 9729.415477 C =10443.407087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.119 4.119 4 H 0.074 0.926 5 C -0.154 4.154 6 C 0.099 3.901 7 H 0.104 0.896 8 O -0.556 6.556 9 C 0.091 3.909 10 N -0.737 5.737 11 C 0.571 3.429 12 O -0.579 6.579 13 C -0.284 4.284 14 C -0.062 4.062 15 C -0.179 4.179 16 C 0.129 3.871 17 C -0.443 4.443 18 H 0.084 0.916 19 C 0.074 3.926 20 N -0.772 5.772 21 Si 0.914 3.086 22 H -0.260 1.260 23 H -0.276 1.276 24 H -0.262 1.262 25 C -0.240 4.240 26 C -0.022 4.022 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.375 0.625 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.401 0.599 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.287 0.713 42 H 0.098 0.902 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.215 -6.185 1.316 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.138 4.138 4 H 0.093 0.907 5 C -0.211 4.211 6 C 0.039 3.961 7 H 0.122 0.878 8 O -0.361 6.361 9 C -0.034 4.034 10 N -0.390 5.390 11 C 0.366 3.634 12 O -0.462 6.462 13 C -0.289 4.289 14 C -0.081 4.081 15 C -0.198 4.198 16 C 0.125 3.875 17 C -0.471 4.471 18 H 0.102 0.898 19 C -0.147 4.147 20 N -0.395 5.395 21 Si 0.737 3.263 22 H -0.185 1.185 23 H -0.201 1.201 24 H -0.187 1.187 25 C -0.259 4.259 26 C -0.042 4.042 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.222 0.778 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.237 0.763 39 H 0.107 0.893 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.308 -6.069 0.744 15.560 hybrid contribution 0.678 -0.204 0.363 0.796 sum -13.630 -6.273 1.108 15.045 Atomic orbital electron populations 1.21830 0.96020 1.01468 1.01775 1.21494 0.95486 0.95662 1.02708 1.21795 0.95298 0.97278 0.99446 0.90731 1.21951 1.01647 1.00920 0.96629 1.22244 0.93401 0.92285 0.88131 0.87838 1.86597 1.77076 1.56845 1.15557 1.21975 0.82298 0.96621 1.02514 1.45816 1.05609 1.09536 1.78077 1.18610 0.88277 0.82402 0.74153 1.90624 1.70819 1.31592 1.53130 1.18891 0.89835 0.94570 1.25599 1.20489 0.94867 0.94668 0.98054 1.20978 0.92407 0.98724 1.07667 1.17789 0.93278 0.91112 0.85298 1.19813 0.91684 1.01912 1.33651 0.89752 1.26101 1.01609 0.94541 0.92449 1.69733 1.39169 1.10367 1.20206 0.86261 0.81000 0.78769 0.80231 1.18468 1.20056 1.18673 1.20712 0.93188 0.97167 1.14843 1.20357 0.93841 0.95704 0.94253 0.92896 0.92576 0.92891 0.91993 0.91148 0.92335 0.92124 0.91870 0.77806 0.90921 0.92021 0.76346 0.89255 0.86189 0.90172 0.88400 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 37.16 0.36 -0.71 16 2 C -0.12 -0.93 5.33 -26.73 -0.14 -1.07 16 3 C -0.12 -1.00 2.16 -90.62 -0.20 -1.20 16 4 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 5 C -0.15 -1.28 8.60 37.16 0.32 -0.96 16 6 C 0.10 1.04 2.58 -26.73 -0.07 0.97 16 7 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 8 O -0.56 -6.09 12.52 -35.23 -0.44 -6.53 16 9 C 0.09 1.23 5.10 -4.04 -0.02 1.21 16 10 N -0.74 -12.54 5.45 -61.31 -0.33 -12.87 16 11 C 0.57 12.35 7.76 -12.42 -0.10 12.25 16 12 O -0.58 -13.94 16.32 5.29 0.09 -13.86 16 13 C -0.28 -6.62 5.89 -104.73 -0.62 -7.24 16 14 C -0.06 -1.39 9.47 -39.61 -0.38 -1.77 16 15 C -0.18 -4.43 8.64 -39.27 -0.34 -4.77 16 16 C 0.13 3.31 5.58 -106.80 -0.60 2.71 16 17 C -0.44 -11.09 9.04 -37.75 -0.34 -11.44 16 18 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 19 C 0.07 1.74 5.14 -17.31 -0.09 1.66 16 20 N -0.77 -18.62 10.95 55.56 0.61 -18.01 16 21 Si 0.91 17.37 29.60 -169.99 -5.03 12.33 16 22 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 25 C -0.24 -5.87 9.73 -39.27 -0.38 -6.26 16 26 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.61 7.54 -51.93 -0.39 0.21 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 34 H 0.06 0.58 6.32 -51.93 -0.33 0.25 16 35 H 0.37 3.05 9.05 45.56 0.41 3.46 16 36 H 0.07 1.01 6.18 -51.93 -0.32 0.69 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.40 6.42 6.47 -40.82 -0.26 6.15 16 39 H 0.09 1.75 6.37 -52.49 -0.33 1.41 16 40 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 41 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 42 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.10 2.32 7.63 -52.48 -0.40 1.92 16 LS Contribution 350.47 15.07 5.28 5.28 Total: -1.00 -29.03 350.47 -8.36 -37.38 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -5.56 Total: 13.80 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.96 Total: -17.54 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.27 Total: -30.88 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.35 Total: -20.39 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.03 -8.36 -37.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270424567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.896 kcal (2) G-P(sol) polarization free energy of solvation -29.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds