Wall clock time and date at job start Tue Mar 31 2020 07:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 H 1.09004 * 109.46920 * 54.99917 * 3 2 1 5 5 C 1.52998 * 109.47271 * 295.00360 * 3 2 1 6 6 C 1.52995 * 109.47246 * 175.00236 * 3 2 1 7 7 H 1.08994 * 109.47379 * 59.99924 * 6 3 2 8 8 O 1.42904 * 109.47276 * 300.00022 * 6 3 2 9 9 C 1.53001 * 109.47058 * 180.02562 * 6 3 2 10 10 N 1.46501 * 109.46967 * 184.99943 * 9 6 3 11 11 C 1.34780 * 120.00331 * 179.97438 * 10 9 6 12 12 O 1.21589 * 119.99684 * 0.02562 * 11 10 9 13 13 C 1.47640 * 120.00259 * 180.02562 * 11 10 9 14 14 C 1.40008 * 119.89740 * 359.72922 * 13 11 10 15 15 C 1.36314 * 120.10976 * 179.71888 * 14 13 11 16 16 C 1.40894 * 119.88896 * 0.57326 * 15 14 13 17 17 C 1.41108 * 120.10487 * 179.67526 * 16 15 14 18 18 H 1.07992 * 120.00237 * 204.65740 * 17 16 15 19 19 C 1.40228 * 119.99585 * 24.65349 * 17 16 15 20 20 N 1.30639 * 120.00168 * 17.86648 * 19 17 16 21 21 Si 1.86807 * 119.99566 * 197.86351 * 19 17 16 22 22 H 1.48491 * 109.47039 * 60.00319 * 21 19 17 23 23 H 1.48507 * 109.46849 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47123 * 299.99808 * 21 19 17 25 25 C 1.40891 * 119.79000 * 359.69972 * 16 15 14 26 26 C 1.36312 * 119.89223 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.46897 * 300.00053 * 1 2 3 28 28 H 1.08998 * 109.47314 * 59.99523 * 1 2 3 29 29 H 1.09002 * 109.47426 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46730 * 240.00475 * 2 1 3 31 31 H 1.08998 * 109.47314 * 120.00477 * 2 1 3 32 32 H 1.09003 * 109.47303 * 299.99543 * 5 3 2 33 33 H 1.08998 * 109.47131 * 59.99778 * 5 3 2 34 34 H 1.09004 * 109.47181 * 179.97438 * 5 3 2 35 35 H 0.96703 * 114.00152 * 300.00197 * 8 6 3 36 36 H 1.09001 * 109.47022 * 304.99496 * 9 6 3 37 37 H 1.08993 * 109.47294 * 65.00272 * 9 6 3 38 38 H 0.97005 * 120.00308 * 0.02562 * 10 9 6 39 39 H 1.07998 * 119.94458 * 359.97438 * 14 13 11 40 40 H 1.07997 * 120.05616 * 180.24983 * 15 14 13 41 41 H 0.97002 * 120.00335 * 179.97438 * 20 19 17 42 42 H 1.07999 * 120.04837 * 179.97438 * 25 16 15 43 43 H 1.08005 * 119.94138 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 1 3.9994 0.9053 -0.7161 8 8 3.9429 0.8054 1.3467 9 6 4.0747 2.8868 0.1263 10 7 5.5398 2.8868 0.1263 11 6 6.2137 4.0541 0.1262 12 8 5.6057 5.1070 0.1267 13 6 7.6901 4.0541 0.1256 14 6 8.3880 2.8403 0.1308 15 6 9.7511 2.8352 0.1245 16 6 10.4578 4.0542 0.1249 17 6 11.8688 4.0542 0.1253 18 1 12.4087 4.9041 0.5158 19 6 12.5701 2.9506 -0.3814 20 7 11.9643 2.0921 -1.1577 21 14 14.3705 2.7081 0.0539 22 1 14.5104 2.5769 1.5263 23 1 14.8772 1.4767 -0.6037 24 1 15.1552 3.8781 -0.4157 25 6 9.7510 5.2730 0.1255 26 6 8.3879 5.2679 0.1251 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.0698 1.5876 -2.1492 33 1 0.5489 2.1253 -1.3968 34 1 1.9982 3.1544 -1.3071 35 1 3.5908 1.2325 2.1396 36 1 3.7114 3.4010 -0.7635 37 1 3.7115 3.4002 1.0165 38 1 6.0248 2.0468 0.1255 39 1 7.8454 1.9065 0.1356 40 1 10.2885 1.8985 0.1244 41 1 12.4495 1.3289 -1.5085 42 1 10.2885 6.2097 0.1263 43 1 7.8453 6.2017 0.1260 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270424567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:07 Heat of formation + Delta-G solvation = -117.538234 kcal Electronic energy + Delta-G solvation = -22563.720054 eV Core-core repulsion = 19185.467253 eV Total energy + Delta-G solvation = -3378.252801 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.90700 -39.60269 -38.74427 -35.93825 -35.67295 -35.25534 -32.30788 -31.35198 -31.22758 -28.75694 -27.40525 -26.00931 -23.78145 -23.00390 -22.58441 -21.56333 -20.87941 -19.37078 -18.65380 -17.67610 -17.28512 -16.97473 -16.39326 -15.97725 -15.76867 -15.48742 -15.30237 -15.09056 -14.83915 -14.56645 -14.34533 -13.90890 -13.85414 -13.65633 -13.35605 -13.18956 -12.85244 -12.79042 -12.62960 -12.57752 -12.42127 -12.36481 -12.11484 -11.79310 -11.50337 -11.38554 -11.34015 -11.12861 -10.98035 -10.58265 -10.06251 -9.58000 -9.40903 -8.79544 -6.48573 0.43880 1.14540 1.38905 1.44684 1.52432 2.11689 2.17956 2.35845 2.78407 3.43154 3.58939 3.68897 3.86094 3.96402 4.18280 4.25204 4.30724 4.31562 4.44053 4.53173 4.60641 4.69815 4.70803 4.83304 4.92026 4.94623 5.02644 5.10006 5.15546 5.16537 5.19099 5.27058 5.29592 5.47750 5.51922 5.57375 5.60716 5.81882 5.94125 5.99098 6.22122 6.53447 6.68216 6.76562 6.78343 6.88562 7.43068 8.15566 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027080 B = 0.002877 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.711259 B = 9729.415477 C =10443.407087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.111 4.111 4 H 0.082 0.918 5 C -0.154 4.154 6 C 0.111 3.889 7 H 0.102 0.898 8 O -0.567 6.567 9 C 0.088 3.912 10 N -0.721 5.721 11 C 0.570 3.430 12 O -0.607 6.607 13 C -0.295 4.295 14 C -0.053 4.053 15 C -0.199 4.199 16 C 0.101 3.899 17 C -0.473 4.473 18 H 0.086 0.914 19 C 0.037 3.963 20 N -0.798 5.798 21 Si 0.988 3.012 22 H -0.258 1.258 23 H -0.264 1.264 24 H -0.258 1.258 25 C -0.253 4.253 26 C -0.033 4.033 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.387 0.613 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.407 0.593 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.297 0.703 42 H 0.105 0.895 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.702 -7.534 1.496 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.130 4.130 4 H 0.101 0.899 5 C -0.212 4.212 6 C 0.051 3.949 7 H 0.119 0.881 8 O -0.374 6.374 9 C -0.035 4.035 10 N -0.373 5.373 11 C 0.363 3.637 12 O -0.492 6.492 13 C -0.299 4.299 14 C -0.072 4.072 15 C -0.218 4.218 16 C 0.098 3.902 17 C -0.500 4.500 18 H 0.104 0.896 19 C -0.182 4.182 20 N -0.421 5.421 21 Si 0.808 3.192 22 H -0.182 1.182 23 H -0.188 1.188 24 H -0.182 1.182 25 C -0.273 4.273 26 C -0.052 4.052 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.237 0.763 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.244 0.756 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.109 0.891 42 H 0.123 0.877 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.833 -7.447 0.927 16.623 hybrid contribution 0.729 0.205 0.294 0.812 sum -14.104 -7.242 1.221 15.902 Atomic orbital electron populations 1.21815 0.95061 1.01921 1.02127 1.21455 0.96277 0.94975 1.02327 1.21728 0.93538 0.97880 0.99867 0.89922 1.21954 1.02487 1.00199 0.96517 1.22137 0.94695 0.89923 0.88113 0.88056 1.86574 1.77491 1.57097 1.16204 1.22228 0.79846 0.98981 1.02494 1.45704 1.07228 1.08313 1.76022 1.18410 0.87714 0.83233 0.74304 1.90605 1.71106 1.32848 1.54672 1.19185 0.91212 0.94510 1.25030 1.20708 0.94290 0.95776 0.96441 1.21013 0.93318 0.98223 1.09242 1.18145 0.94187 0.91810 0.86092 1.20096 0.91861 1.03224 1.34816 0.89565 1.26950 1.06048 0.93583 0.91622 1.69756 1.41198 1.10804 1.20357 0.85148 0.75086 0.79082 0.79892 1.18220 1.18772 1.18222 1.20859 0.93596 0.97368 1.15461 1.20513 0.93842 0.96420 0.94440 0.92547 0.92216 0.92450 0.92284 0.91644 0.92348 0.90882 0.92875 0.76344 0.91071 0.91928 0.75597 0.86211 0.86851 0.89143 0.87697 0.87881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.67 71.98 0.70 -1.07 16 2 C -0.11 -1.57 5.33 30.59 0.16 -1.41 16 3 C -0.11 -1.64 2.16 -10.80 -0.02 -1.67 16 4 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 5 C -0.15 -2.29 8.60 71.98 0.62 -1.67 16 6 C 0.11 2.12 2.58 30.59 0.08 2.20 16 7 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 8 O -0.57 -11.25 12.52 -148.98 -1.87 -13.12 16 9 C 0.09 2.26 5.10 86.38 0.44 2.70 16 10 N -0.72 -23.60 5.45 -466.15 -2.54 -26.15 16 11 C 0.57 24.37 7.76 86.73 0.67 25.04 16 12 O -0.61 -29.15 16.32 -4.00 -0.07 -29.22 16 13 C -0.29 -13.74 5.89 -19.94 -0.12 -13.86 16 14 C -0.05 -2.39 9.47 22.25 0.21 -2.18 16 15 C -0.20 -9.99 8.64 22.47 0.19 -9.80 16 16 C 0.10 5.31 5.58 -21.28 -0.12 5.19 16 17 C -0.47 -24.05 9.04 23.46 0.21 -23.83 16 18 H 0.09 4.18 7.91 -2.91 -0.02 4.16 16 19 C 0.04 1.73 5.14 85.35 0.44 2.17 16 20 N -0.80 -38.43 10.95 21.87 0.24 -38.19 16 21 Si 0.99 34.92 29.60 68.60 2.03 36.95 16 22 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 23 H -0.26 -8.72 7.11 99.48 0.71 -8.02 16 24 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 25 C -0.25 -12.74 9.73 22.47 0.22 -12.52 16 26 C -0.03 -1.61 9.52 22.25 0.21 -1.40 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.65 6.56 -2.39 -0.02 0.64 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.99 7.54 -2.39 -0.02 0.97 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.91 6.56 -2.39 -0.02 0.89 16 34 H 0.05 0.90 6.32 -2.38 -0.02 0.88 16 35 H 0.39 5.47 9.05 -74.06 -0.67 4.80 16 36 H 0.07 1.90 6.18 -2.39 -0.01 1.89 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.41 12.32 6.47 -92.70 -0.60 11.72 16 39 H 0.12 4.51 6.37 -2.91 -0.02 4.50 16 40 H 0.11 5.77 6.16 -2.91 -0.02 5.76 16 41 H 0.30 12.74 8.29 -92.71 -0.77 11.97 16 42 H 0.10 4.94 8.06 -2.91 -0.02 4.91 16 43 H 0.10 4.88 7.63 -2.91 -0.02 4.85 16 Total: -1.00 -62.19 350.47 1.46 -60.73 By element: Atomic # 1 Polarization: 41.34 SS G_CDS: -0.24 Total: 41.10 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: 3.90 Total: -32.11 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -2.30 Total: -64.34 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -1.93 Total: -42.33 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 2.03 Total: 36.95 kcal Total: -62.19 1.46 -60.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270424567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.808 kcal (2) G-P(sol) polarization free energy of solvation -62.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds