Wall clock time and date at job start Tue Mar 31 2020 07:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46888 * 2 1 4 4 H 1.08997 * 110.77281 * 303.25358 * 3 2 1 5 5 C 1.54318 * 110.70507 * 66.45799 * 3 2 1 6 6 N 1.47449 * 107.23466 * 140.66236 * 5 3 2 7 7 C 1.46902 * 110.99727 * 123.25738 * 6 5 3 8 8 C 1.50701 * 109.46725 * 170.00238 * 7 6 5 9 9 C 1.38298 * 119.92806 * 269.72006 * 8 7 6 10 10 C 1.38100 * 120.06545 * 179.72607 * 9 8 7 11 11 C 1.38877 * 119.93379 * 0.53278 * 10 9 8 12 12 O 1.35755 * 120.07479 * 179.72387 * 11 10 9 13 13 C 1.34821 * 117.00095 * 174.48535 * 12 11 10 14 14 H 1.08000 * 120.00743 * 5.06002 * 13 12 11 15 15 C 1.38658 * 119.99865 * 185.05678 * 13 12 11 16 16 N 1.31560 * 119.99880 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00038 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47201 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46692 * 120.00154 * 17 15 13 20 20 H 1.48495 * 109.47270 * 239.99964 * 17 15 13 21 21 C 1.38878 * 119.85933 * 359.74389 * 11 10 9 22 22 C 1.38096 * 119.93208 * 0.02562 * 21 11 10 23 23 C 1.47848 * 108.56706 * 0.99110 * 6 5 3 24 24 C 1.54907 * 104.79454 * 335.90202 * 23 6 5 25 25 H 1.08999 * 110.99376 * 278.97943 * 24 23 6 26 26 O 1.42900 * 111.02328 * 155.17592 * 24 23 6 27 27 H 1.09000 * 109.47028 * 59.99520 * 1 2 3 28 28 H 1.09003 * 109.46554 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46820 * 299.99576 * 1 2 3 30 30 H 1.09006 * 109.47217 * 240.00404 * 2 1 3 31 31 H 1.09001 * 109.47699 * 120.00145 * 2 1 3 32 32 H 1.09000 * 109.88627 * 21.25907 * 5 3 2 33 33 H 1.08997 * 110.02413 * 260.14403 * 5 3 2 34 34 H 1.09004 * 109.47351 * 290.00064 * 7 6 5 35 35 H 1.08993 * 109.47494 * 50.00108 * 7 6 5 36 36 H 1.08000 * 119.96911 * 359.97438 * 9 8 7 37 37 H 1.08005 * 120.03285 * 180.27684 * 10 9 8 38 38 H 0.96998 * 119.99765 * 179.97438 * 16 15 13 39 39 H 1.08005 * 120.03368 * 179.97438 * 21 11 10 40 40 H 1.07999 * 119.96731 * 180.02562 * 22 21 11 41 41 H 1.09004 * 110.37047 * 94.72844 * 23 6 5 42 42 H 1.08994 * 110.36913 * 217.07500 * 23 6 5 43 43 H 0.96700 * 113.99781 * 67.71083 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6419 1.9933 -0.8522 5 6 1.6782 2.1491 1.3234 6 7 2.8320 2.9857 1.7015 7 6 2.4335 4.3905 1.8621 8 6 3.5673 5.1666 2.4810 9 6 3.6555 5.2806 3.8565 10 6 4.6965 5.9864 4.4269 11 6 5.6492 6.5913 3.6175 12 8 6.6706 7.2905 4.1751 13 6 7.6219 7.7549 3.3402 14 1 7.5088 7.6358 2.2728 15 6 8.7458 8.3854 3.8521 16 7 8.8839 8.5301 5.1524 17 14 10.0637 9.0295 2.6954 18 1 9.6725 8.7442 1.2915 19 1 10.2104 10.4957 2.8798 20 1 11.3553 8.3611 2.9955 21 6 5.5547 6.4798 2.2365 22 6 4.5140 5.7686 1.6722 23 6 3.8751 2.8462 0.6631 24 6 3.5911 1.4760 -0.0014 25 1 3.9997 0.6605 0.5953 26 8 4.1027 1.4371 -1.3351 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8935 -0.5138 0.8899 32 1 1.4875 1.4078 2.0994 33 1 0.7966 2.7746 1.1836 34 1 2.1932 4.8138 0.8867 35 1 1.5580 4.4482 2.5087 36 1 2.9117 4.8139 4.4853 37 1 4.7673 6.0714 5.5013 38 1 9.6703 8.9708 5.5105 39 1 6.2938 6.9494 1.6043 40 1 4.4402 5.6812 0.5983 41 1 3.7902 3.6484 -0.0701 42 1 4.8658 2.8495 1.1176 43 1 5.0682 1.4561 -1.3866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270485320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:52 Heat of formation + Delta-G solvation = -55.313288 kcal Electronic energy + Delta-G solvation = -22892.322933 eV Core-core repulsion = 19516.768409 eV Total energy + Delta-G solvation = -3375.554525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.85147 -38.87318 -36.83918 -35.83047 -34.39415 -32.32091 -30.79433 -30.17485 -28.51242 -27.91846 -25.66756 -24.60943 -22.87987 -22.00650 -21.26700 -20.38505 -20.15479 -17.96756 -17.55641 -16.93785 -15.97586 -15.67709 -14.99203 -14.59039 -14.44081 -14.22317 -14.03587 -13.88157 -13.53176 -13.46032 -13.24488 -12.88696 -12.76602 -12.59991 -12.31459 -12.23494 -11.87009 -11.79365 -11.44244 -11.30478 -11.11011 -10.95138 -10.72958 -10.62410 -10.52694 -10.46520 -10.39631 -10.07162 -9.31800 -8.83739 -8.28326 -8.14888 -7.16473 -6.45026 -4.03753 2.24182 2.29443 3.11576 3.13220 3.18762 3.74620 3.96448 4.24756 4.36369 4.43854 4.70078 4.74929 4.95917 5.07454 5.10152 5.15767 5.21348 5.29801 5.33822 5.35951 5.44080 5.55237 5.56627 5.70315 5.75608 5.78559 5.83852 5.87990 5.88728 5.97741 5.99779 6.14468 6.23110 6.43379 6.72117 6.90205 6.92279 7.06458 7.11494 7.28445 7.41173 7.45105 7.46284 7.84605 8.00291 9.00836 9.71679 10.73187 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026974 B = 0.003087 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.793081 B = 9067.828518 C = 9805.194029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.101 4.101 4 H 0.082 0.918 5 C 0.046 3.954 6 N -0.519 5.519 7 C 0.109 3.891 8 C -0.179 4.179 9 C -0.053 4.053 10 C -0.194 4.194 11 C 0.156 3.844 12 O -0.179 6.179 13 C -0.391 4.391 14 H 0.092 0.908 15 C 0.038 3.962 16 N -0.863 5.863 17 Si 0.940 3.060 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.234 4.234 22 C -0.064 4.064 23 C 0.017 3.983 24 C 0.094 3.906 25 H 0.072 0.928 26 O -0.563 6.563 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.269 0.731 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.661 -13.694 -9.927 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.120 4.120 4 H 0.100 0.900 5 C -0.082 4.082 6 N -0.244 5.244 7 C -0.018 4.018 8 C -0.180 4.180 9 C -0.072 4.072 10 C -0.213 4.213 11 C 0.102 3.898 12 O -0.082 6.082 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.166 4.166 16 N -0.498 5.498 17 Si 0.765 3.235 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.201 1.201 21 C -0.254 4.254 22 C -0.083 4.083 23 C -0.111 4.111 24 C 0.034 3.966 25 H 0.090 0.910 26 O -0.368 6.368 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.079 0.921 39 H 0.143 0.857 40 H 0.119 0.881 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -12.889 -13.697 -9.198 20.936 hybrid contribution 1.035 0.736 -1.218 1.760 sum -11.854 -12.960 -10.416 20.420 Atomic orbital electron populations 1.21789 0.95679 1.01595 1.01931 1.21485 0.95935 0.95222 1.02283 1.22385 0.93724 0.97254 0.98656 0.89990 1.22932 0.93408 0.96657 0.95186 1.63634 1.08646 1.08656 1.43450 1.21020 0.96023 0.86256 0.98507 1.19053 0.99688 1.05651 0.93601 1.20448 0.96456 0.96544 0.93739 1.20217 0.97106 1.04878 0.99140 1.19395 0.89106 0.89909 0.91405 1.83979 1.28975 1.59350 1.35911 1.21361 0.98148 1.37331 0.89880 0.89083 1.25290 0.97580 0.96998 0.96692 1.70050 1.28495 1.40164 1.11083 0.85655 0.79817 0.78636 0.79357 1.19132 1.20154 1.20137 1.21111 1.01936 1.07366 0.94948 1.20579 0.93733 0.96202 0.97817 1.23687 0.97410 0.96811 0.93186 1.23055 0.94118 0.96460 0.82947 0.90989 1.86462 1.26436 1.97126 1.26760 0.92834 0.92746 0.92467 0.91637 0.91660 0.90221 0.92485 0.94828 0.90769 0.87099 0.86583 0.92086 0.85701 0.88110 0.92711 0.89829 0.77197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.76 37.16 0.36 -0.73 16 2 C -0.11 -0.93 5.32 -26.73 -0.14 -1.07 16 3 C -0.10 -1.00 2.71 -88.79 -0.24 -1.24 16 4 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 5 C 0.05 0.48 5.61 -2.83 -0.02 0.46 16 6 N -0.52 -6.75 5.15 -232.68 -1.20 -7.95 16 7 C 0.11 1.50 4.72 -4.97 -0.02 1.48 16 8 C -0.18 -3.06 5.10 -104.58 -0.53 -3.59 16 9 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 10 C -0.19 -4.14 9.99 -39.40 -0.39 -4.53 16 11 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 12 O -0.18 -5.13 9.76 0.06 0.00 -5.13 16 13 C -0.39 -10.96 9.49 30.89 0.29 -10.66 16 14 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 15 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 16 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 17 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 C -0.23 -5.10 9.17 -39.40 -0.36 -5.46 16 22 C -0.06 -1.18 8.91 -39.61 -0.35 -1.54 16 23 C 0.02 0.22 5.34 -2.30 -0.01 0.21 16 24 C 0.09 1.00 3.87 -24.59 -0.10 0.91 16 25 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 26 O -0.56 -5.93 13.47 -35.23 -0.47 -6.40 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.40 7.49 -51.93 -0.39 0.01 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.53 8.06 -51.93 -0.42 0.11 16 32 H 0.08 0.79 7.76 -51.93 -0.40 0.39 16 33 H 0.06 0.55 7.55 -51.93 -0.39 0.16 16 34 H 0.03 0.45 7.79 -51.93 -0.40 0.04 16 35 H 0.07 0.93 7.97 -51.93 -0.41 0.52 16 36 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.13 2.74 5.64 -52.48 -0.30 2.44 16 40 H 0.10 1.62 7.48 -52.49 -0.39 1.23 16 41 H 0.05 0.73 6.99 -51.93 -0.36 0.36 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.38 2.61 9.12 45.56 0.42 3.03 16 LS Contribution 348.98 15.07 5.26 5.26 Total: -1.00 -31.27 348.98 -8.78 -40.04 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.84 Total: 5.92 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -2.26 Total: -22.63 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: -0.44 Total: -32.58 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.47 Total: -11.53 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.27 -8.78 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270485320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.270 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds