Wall clock time and date at job start Tue Mar 31 2020 07:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46888 * 2 1 4 4 H 1.08997 * 110.77281 * 303.25358 * 3 2 1 5 5 C 1.54318 * 110.70507 * 66.45799 * 3 2 1 6 6 N 1.47449 * 107.23466 * 140.66236 * 5 3 2 7 7 C 1.46902 * 110.99727 * 123.25738 * 6 5 3 8 8 C 1.50701 * 109.46725 * 170.00238 * 7 6 5 9 9 C 1.38298 * 119.92806 * 269.72006 * 8 7 6 10 10 C 1.38100 * 120.06545 * 179.72607 * 9 8 7 11 11 C 1.38877 * 119.93379 * 0.53278 * 10 9 8 12 12 O 1.35755 * 120.07479 * 179.72387 * 11 10 9 13 13 C 1.34821 * 117.00095 * 174.48535 * 12 11 10 14 14 H 1.08000 * 120.00743 * 5.06002 * 13 12 11 15 15 C 1.38658 * 119.99865 * 185.05678 * 13 12 11 16 16 N 1.31560 * 119.99880 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00038 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47201 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46692 * 120.00154 * 17 15 13 20 20 H 1.48495 * 109.47270 * 239.99964 * 17 15 13 21 21 C 1.38878 * 119.85933 * 359.74389 * 11 10 9 22 22 C 1.38096 * 119.93208 * 0.02562 * 21 11 10 23 23 C 1.47848 * 108.56706 * 0.99110 * 6 5 3 24 24 C 1.54907 * 104.79454 * 335.90202 * 23 6 5 25 25 H 1.08999 * 110.99376 * 278.97943 * 24 23 6 26 26 O 1.42900 * 111.02328 * 155.17592 * 24 23 6 27 27 H 1.09000 * 109.47028 * 59.99520 * 1 2 3 28 28 H 1.09003 * 109.46554 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46820 * 299.99576 * 1 2 3 30 30 H 1.09006 * 109.47217 * 240.00404 * 2 1 3 31 31 H 1.09001 * 109.47699 * 120.00145 * 2 1 3 32 32 H 1.09000 * 109.88627 * 21.25907 * 5 3 2 33 33 H 1.08997 * 110.02413 * 260.14403 * 5 3 2 34 34 H 1.09004 * 109.47351 * 290.00064 * 7 6 5 35 35 H 1.08993 * 109.47494 * 50.00108 * 7 6 5 36 36 H 1.08000 * 119.96911 * 359.97438 * 9 8 7 37 37 H 1.08005 * 120.03285 * 180.27684 * 10 9 8 38 38 H 0.96998 * 119.99765 * 179.97438 * 16 15 13 39 39 H 1.08005 * 120.03368 * 179.97438 * 21 11 10 40 40 H 1.07999 * 119.96731 * 180.02562 * 22 21 11 41 41 H 1.09004 * 110.37047 * 94.72844 * 23 6 5 42 42 H 1.08994 * 110.36913 * 217.07500 * 23 6 5 43 43 H 0.96700 * 113.99781 * 67.71083 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6419 1.9933 -0.8522 5 6 1.6782 2.1491 1.3234 6 7 2.8320 2.9857 1.7015 7 6 2.4335 4.3905 1.8621 8 6 3.5673 5.1666 2.4810 9 6 3.6555 5.2806 3.8565 10 6 4.6965 5.9864 4.4269 11 6 5.6492 6.5913 3.6175 12 8 6.6706 7.2905 4.1751 13 6 7.6219 7.7549 3.3402 14 1 7.5088 7.6358 2.2728 15 6 8.7458 8.3854 3.8521 16 7 8.8839 8.5301 5.1524 17 14 10.0637 9.0295 2.6954 18 1 9.6725 8.7442 1.2915 19 1 10.2104 10.4957 2.8798 20 1 11.3553 8.3611 2.9955 21 6 5.5547 6.4798 2.2365 22 6 4.5140 5.7686 1.6722 23 6 3.8751 2.8462 0.6631 24 6 3.5911 1.4760 -0.0014 25 1 3.9997 0.6605 0.5953 26 8 4.1027 1.4371 -1.3351 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8935 -0.5138 0.8899 32 1 1.4875 1.4078 2.0994 33 1 0.7966 2.7746 1.1836 34 1 2.1932 4.8138 0.8867 35 1 1.5580 4.4482 2.5087 36 1 2.9117 4.8139 4.4853 37 1 4.7673 6.0714 5.5013 38 1 9.6703 8.9708 5.5105 39 1 6.2938 6.9494 1.6043 40 1 4.4402 5.6812 0.5983 41 1 3.7902 3.6484 -0.0701 42 1 4.8658 2.8495 1.1176 43 1 5.0682 1.4561 -1.3866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270485320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:52 Heat of formation + Delta-G solvation = -77.541161 kcal Electronic energy + Delta-G solvation = -22893.286806 eV Core-core repulsion = 19516.768409 eV Total energy + Delta-G solvation = -3376.518398 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.01843 -40.36755 -38.40423 -36.80859 -35.27438 -34.27533 -32.02959 -31.79850 -29.66913 -28.79384 -27.49600 -25.92136 -23.73297 -23.59757 -22.41601 -21.70764 -21.00274 -19.83233 -18.82070 -18.39103 -16.91782 -16.70733 -16.45673 -16.28492 -15.77030 -15.51476 -15.39857 -15.06376 -14.81388 -14.65892 -14.42243 -14.24244 -13.99746 -13.62063 -13.57200 -13.42139 -13.06886 -12.92786 -12.67085 -12.60131 -12.43324 -12.24619 -12.11827 -12.03442 -11.67852 -11.49697 -11.33152 -11.17387 -10.91147 -10.80075 -9.76879 -9.29345 -8.89204 -8.47588 -6.15608 0.60727 0.67899 1.34317 1.42554 1.52617 2.17069 2.70931 2.95298 3.19026 3.48397 3.52796 3.59051 3.63265 3.98115 4.02471 4.08724 4.19357 4.24945 4.32444 4.35960 4.48648 4.58653 4.60869 4.63463 4.68323 4.79310 4.80730 4.91309 4.93903 4.99107 5.08923 5.14785 5.20172 5.21443 5.30930 5.35677 5.47757 5.57564 5.71530 5.78363 6.01220 6.03486 6.09098 6.24624 6.79963 6.97314 7.78750 8.76007 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026974 B = 0.003087 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.793081 B = 9067.828518 C = 9805.194029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C -0.097 4.097 4 H 0.074 0.926 5 C 0.049 3.951 6 N -0.531 5.531 7 C 0.111 3.889 8 C -0.153 4.153 9 C -0.047 4.047 10 C -0.205 4.205 11 C 0.114 3.886 12 O -0.233 6.233 13 C -0.412 4.412 14 H 0.100 0.900 15 C -0.024 4.024 16 N -0.921 5.921 17 Si 1.019 2.981 18 H -0.252 1.252 19 H -0.268 1.268 20 H -0.268 1.268 21 C -0.242 4.242 22 C -0.061 4.061 23 C 0.017 3.983 24 C 0.098 3.902 25 H 0.077 0.923 26 O -0.574 6.574 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.096 0.904 36 H 0.147 0.853 37 H 0.112 0.888 38 H 0.273 0.727 39 H 0.116 0.884 40 H 0.129 0.871 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.723 -15.395 -11.947 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.145 4.145 3 C -0.116 4.116 4 H 0.092 0.908 5 C -0.078 4.078 6 N -0.256 5.256 7 C -0.016 4.016 8 C -0.154 4.154 9 C -0.065 4.065 10 C -0.224 4.224 11 C 0.064 3.936 12 O -0.140 6.140 13 C -0.488 4.488 14 H 0.118 0.882 15 C -0.221 4.221 16 N -0.560 5.560 17 Si 0.838 3.162 18 H -0.175 1.175 19 H -0.193 1.193 20 H -0.193 1.193 21 C -0.261 4.261 22 C -0.080 4.080 23 C -0.111 4.111 24 C 0.039 3.961 25 H 0.095 0.905 26 O -0.381 6.381 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.114 0.886 36 H 0.164 0.836 37 H 0.131 0.869 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.147 0.853 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -14.997 -15.436 -11.246 24.283 hybrid contribution 1.383 1.047 -0.667 1.859 sum -13.614 -14.389 -11.914 23.115 Atomic orbital electron populations 1.21776 0.94700 1.02244 1.02094 1.21448 0.96741 0.94066 1.02256 1.22361 0.93021 0.98102 0.98116 0.90756 1.22978 0.92690 0.96577 0.95589 1.63542 1.09839 1.08176 1.44067 1.21048 0.94869 0.86454 0.99267 1.19564 0.99354 1.03237 0.93238 1.20840 0.95788 0.95178 0.94740 1.20472 0.97600 1.05217 0.99118 1.19928 0.89321 0.91328 0.93030 1.83942 1.30717 1.62118 1.37208 1.21836 0.98762 1.37740 0.90482 0.88243 1.26590 0.99872 0.97037 0.98599 1.70192 1.29815 1.42480 1.13464 0.84531 0.76216 0.78045 0.77415 1.17522 1.19309 1.19297 1.21188 1.02972 1.08015 0.93946 1.20868 0.92662 0.95013 0.99456 1.23647 0.96580 0.97943 0.92976 1.23016 0.94819 0.95360 0.82931 0.90541 1.86435 1.28003 1.97016 1.26661 0.92951 0.91935 0.92004 0.92110 0.91259 0.89304 0.91197 0.93704 0.88584 0.83572 0.86940 0.91844 0.86618 0.85344 0.93281 0.91605 0.75540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.76 71.98 0.70 -1.00 16 2 C -0.11 -1.48 5.32 30.60 0.16 -1.31 16 3 C -0.10 -1.62 2.71 -9.61 -0.03 -1.65 16 4 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 5 C 0.05 0.83 5.61 86.65 0.49 1.31 16 6 N -0.53 -11.95 5.15 -890.08 -4.59 -16.53 16 7 C 0.11 2.59 4.72 85.56 0.40 2.99 16 8 C -0.15 -4.80 5.10 -19.83 -0.10 -4.90 16 9 C -0.05 -1.60 9.69 22.25 0.22 -1.38 16 10 C -0.20 -8.86 9.99 22.39 0.22 -8.63 16 11 C 0.11 5.78 6.65 22.58 0.15 5.93 16 12 O -0.23 -14.24 9.76 -22.70 -0.22 -14.46 16 13 C -0.41 -24.28 9.49 67.92 0.64 -23.64 16 14 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 15 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 16 N -0.92 -57.05 13.67 21.61 0.30 -56.76 16 17 Si 1.02 43.21 29.55 68.60 2.03 45.23 16 18 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 19 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 20 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 21 C -0.24 -10.69 9.17 22.39 0.21 -10.49 16 22 C -0.06 -2.15 8.91 22.25 0.20 -1.95 16 23 C 0.02 0.39 5.34 86.77 0.46 0.85 16 24 C 0.10 1.86 3.87 31.98 0.12 1.98 16 25 H 0.08 1.38 8.05 -2.39 -0.02 1.36 16 26 O -0.57 -10.87 13.47 -148.98 -2.01 -12.87 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.64 7.49 -2.39 -0.02 0.63 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.07 0.91 8.06 -2.39 -0.02 0.89 16 32 H 0.09 1.39 7.76 -2.39 -0.02 1.37 16 33 H 0.07 1.04 7.55 -2.39 -0.02 1.02 16 34 H 0.04 0.99 7.79 -2.38 -0.02 0.98 16 35 H 0.10 1.91 7.97 -2.39 -0.02 1.89 16 36 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 40 H 0.13 3.78 7.48 -2.91 -0.02 3.76 16 41 H 0.05 1.17 6.99 -2.38 -0.02 1.15 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.39 4.69 9.12 -74.06 -0.68 4.02 16 Total: -1.00 -71.69 348.98 0.16 -71.53 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.33 Total: 26.65 kcal Atomic # 6 Polarization: -47.10 SS G_CDS: 4.32 Total: -42.79 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -4.29 Total: -73.29 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -2.23 Total: -27.33 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.69 0.16 -71.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270485320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.010 kcal (2) G-P(sol) polarization free energy of solvation -71.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds